Home    Genome Browser    BLAT Search    Help
  Chromosome 22 - RH Maps - Single Contig
 

Chromosome 22 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_011516 NT_028395 NT_011519 NT_011520 NT_011521 NT_011522 NT_011523 NT_030872
NT_011525 NT_019197 NT_011526


  NT_011519
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011519AP000543137923483          
S/G/Y/R/B/O NT_011519AP000544138101663          
S/G/Y/R/B/O NT_011519AP000545138491593          
S/G/Y/R/B/O NT_011519AP000546138820693          
S/G/Y/R/B/O NT_011519AP000547140013863RH418923671.06    2AC067992, AC076966, AC067992, AC076966, AP000547
S/G/Y/R/B/O NT_011519AP000547140062163RH657903674.48    2AC067992, AC076966, AP000365, AC067992, AC076966, AP000365, AP000547
S/G/Y/R/B/O NT_011519AP000365140363603          
S/G/Y/R/B/O NT_011519AC005301141131873RH74651  220.00  1AP000365, AC005301, AP000365, AP000548, M60676
S/G/Y/R/B/O NT_011519AC007064142218673          
S/G/Y/R/B/O NT_011519AC006548142482073          
S/G/Y/R/B/O NT_011519AC006946144483563          
S/G/Y/R/B/O NT_011519AC005300145378603RH1025342213.14    1AC006946, AC005300, AC006946
S/G/Y/R/B/O NT_011519AC005300145406893RH460902213.14    1AC006946, AC005300, AC006946
S/G/Y/R/B/O NT_011519AC005300145628423RH107932218.91    1AC006946, AC005300, AC006946
S/G/Y/R/B/O NT_011519AC005300145630283RH804882213.14    1AC006946, AC005300, AC006946
S/G/Y/R/B/O NT_011519AC005300145901493RH1026102213.24    1AC006946, AC005300, AC006946
S/G/Y/R/B/O NT_011519AC005300146043643RH388562213.14    1 AC005300
S/G/Y/R/B/O NT_011519AC005399146293963          
S/G/Y/R/B/O NT_011519AC004019148033423RH152512214.85  2219.801 AC004019
S/G/Y/R/B/O NT_011519AC004019148033423RH621  2243.00  1 AC004019
S/G/Y/R/B/O NT_011519AC007666149730363RH658812216.86    1AC004019, AC000052, AC004019, AC007666
S/G/Y/R/B/O NT_011519AC007666149768083RH985622216.86    1AC004019, AC004019, AC007666
S/G/Y/R/B/O NT_011519AC007666150137343RH255422216.86    1AC004019, AC000052, AC004019, AC007666
S/G/Y/R/B/O NT_011519AC007666150137743RH103952216.86    1 AC000052, AC007666
S/G/Y/R/B/O NT_011519AC007666150152933RH577342218.99  2219.701AC023331, AL512353, AC000052, AC007666, AC023331, AL512353
S/G/Y/R/B/O NT_011519AC006285151200253RH481922220.41    1 AC006285, AC016025
S/G/Y/R/B/O NT_011519AC006285151253683RH1745  2264.00  1 AC006285, AC016025
S/G/Y/R/B/O NT_011519AC006285151296463RH1039902220.41    1 AC006285, AC016025
S/G/Y/R/B/O NT_011519AC006285151534233RH677302214.75    1 AC006285, AC007845, AC016025
S/G/Y/R/B/O NT_011519AC006285151556493RH459882220.41    1 AC006285, AC007845, AC016025
S/G/Y/R/B/O NT_011519AC006285151581023RH929742220.41    1 AC006285, AC007845, AC016025
S/G/Y/R/B/O NT_011519AC006285151585403RH37959  2256.00  1 AC006285, AC007845, AC016025
S/G/Y/R/B/O NT_011519AC016026152023263RH777342213.14    1 AC007845, AC016025, AC016026
S/G/Y/R/B/O NT_011519AC016026152107463RH669902220.41    1 AC007845, AC016025, AC016026
S/G/Y/R/B/O NT_011519AC016026152107523RH80619229.19    1 AC007845, AC016025, AC016026
S/G/Y/R/B/O NT_011519AC016026152107593RH777832216.86    1 AC016025, AC016026
S/G/Y/R/B/O NT_011519AC016026152542333WI-352    2219.901 AC016025, AC016026
S/G/Y/R/B/O NT_011519AC016026152832943RH258212213.14    1 AC007845
S/G/Y/R/B/O NT_011519AC016026152834823RH936002213.14    1 AC007845, AC016026
S/G/Y/R/B/O NT_011519AC016026152841463RH669442216.86    1 AC007845, AC016026
S/G/Y/R/B/O NT_011519AC016027153701383RH778152214.75    1 AC016027, AC016830
S/G/Y/R/B/O NT_011519AC016027153714583SGC32325    222.801 AC016027, AC016830
S/G/Y/R/B/O NT_011519AC016027153938513RH577262216.86  2219.801 AC016027, AC016830
S/G/Y/R/B/O NT_011519AC008101154594713          
S/G/Y/R/B/O NT_011519AC008079155120743RH1034442216.90    1AC008101, AC016027, AC008079, AC008101, AC016027, AC016830
S/G/Y/R/B/O NT_011519AC008079155136633RH14985  2286.00  1AC008101, AC016027, AC007324, AC008079, AC008101, AC016027, AC016830
S/G/Y/R/B/O NT_011519AC008079155138473RH471172216.86    1AC008101, AC016027, AC007324, AC008079, AC008101, AC016027, AC016830
S/G/Y/R/B/O NT_011519AC008079155142013RH107762218.91    1AC008101, AC016027, AC007324, AC008079, AC008101, AC016027, AC016830
S/G/Y/R/B/O NT_011519AC008079155153583RH388232214.85    1AC008101, AC016027, AC007324, AC008079, AC008101, AC016027, AC016830
S/G/Y/R/B/O NT_011519AC008079155281363RH982072222.84    1AC008101, AC016027, AC007324, AC008079, AC008101, AC016027, AC016830


  NT_011519 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011519AC008079155539283RH486632216.86    1AC008101, AC007324, AC008079, AC008101
S/G/Y/R/B/O NT_011519AC008079155682643RH483482216.86    1AC008101, AC007324, AC008079, AC008101
S/G/Y/R/B/O NT_011519AC008079155999893RH989562228.13    5 More than 15
S/G/Y/R/B/O NT_011519AC008079156074003WI-3127    2223.505 More than 15
S/G/Y/R/B/O NT_011519AC008132156790953WI-3127    2223.505 More than 15
S/G/Y/R/B/O NT_011519AC008132156865883RH989562228.13    5 More than 15
S/G/Y/R/B/O NT_011519AC008132157014583RH691162217.11    3AL133466, AP000356, AP000550, D87002, AC000051, AC007981, AC008132, AC011718, AC012331, AC013360, AC023491, AL133466, AL356585, AP000356, AP000550, D87002
S/G/Y/R/B/O NT_011519AC008103157822193RH16952221.15    4AC008132, AP000356, AP000552, D87002, U07000, AC000051, AC002308, AC007325, AC007664, AC007708, AC008103, AC008132, AC012330, AC012331, AP000356, AP000552, D87002, NG_000002, U07000
S/G/Y/R/B/O NT_011519AC008103157892043RH98694229.93    3AP000550, AP000552, AC002051, AC002054, AC007324, AC007325, AC007664, AC007708, AC007981, AC008018, AC008103, AC009288, AC012330, AC013360, AP000550, AP000552
S/G/Y/R/B/O NT_011519AC008103157917433RH989562228.13    5 More than 15
S/G/Y/R/B/O NT_011519AC008103157991583WI-3127    2223.505 More than 15
S/G/Y/R/B/O NT_011519AC008103158405383RH577832210.87  2221.601AC007326, AC007325, AC007326, AC008103
S/G/Y/R/B/O NT_011519AC008103158588813RH576702213.03  2219.701AC007326, AC007325, AC007326, AC008103
S/G/Y/R/B/O NT_011519AC007326158919813RH70290220.00    2AC007663, AC006549, AC007326, AC007663, AC058790
S/G/Y/R/B/O NT_011519AC007326159220063RH57798226.95  220.001 AC000069, AC007326
S/G/Y/R/B/O NT_011519AC000095159357483RH38875227.05    2AP000355, AC000095, AC011896, AP000355
S/G/Y/R/B/O NT_011519AC000095159478013RH100132214.75    1 AC002522
S/G/Y/R/B/O NT_011519AC000095159640393RH578412216.86  2218.701AC004461, AC000095, AC002522, AC004461, L77570
S/G/Y/R/B/O NT_011519AC000095159640853RH104522216.86    1AC004461, AC000095, AC002522, AC004461, L77570
S/G/Y/R/B/O NT_011519AC000095159653483RH107512216.86    1AC004461, AC000095, AC002522, AC004461, L77570
S/G/Y/R/B/O NT_011519AC000095159680123RH388292217.38    1AC004461, AC000095, AC002522, AC004461, L77570
S/G/Y/R/B/O NT_011519AC004461159740253RH37818  22106.00  1 AC002522, AC004461, L77570
S/G/Y/R/B/O NT_011519AC004461159742733RH787082216.86    1 AC002522, AC004461, L77570
S/G/Y/R/B/O NT_011519AC004462160019573          
S/G/Y/R/B/O NT_011519AC004471160617073RH983032217.89    1 AC004471, AL359537, AL391096, L77570
S/G/Y/R/B/O NT_011519AC004463161033623RH57681222.63  221.801 AL359537, AL391096
S/G/Y/R/B/O NT_011519L77569161089973          
S/G/Y/R/B/O NT_011519AC000081161362373          
S/G/Y/R/B/O NT_011519AC000094161802423          
S/G/Y/R/B/O NT_011519AC000085162584833RH777842224.91    1 AC000073, AC000085
S/G/Y/R/B/O NT_011519AC000085162584903RH388802217.11    1 AC000073, AC000085
S/G/Y/R/B/O NT_011519AC000085162773143WI-326    2213.701 AC000073, AC000085
S/G/Y/R/B/O NT_011519AC000092162868333          
S/G/Y/R/B/O NT_011519AC000079163255153          
S/G/Y/R/B/O NT_011519AC000068163635873RH577962223.05  2217.401 AC000068
S/G/Y/R/B/O NT_011519AC000068163636933RH778082210.98    1 AC000068
S/G/Y/R/B/O NT_011519AC000068163699493RH480372217.99    1 AC000068
S/G/Y/R/B/O NT_011519AC000068163709473RH657622217.11    1 AC000068
S/G/Y/R/B/O NT_011519AC000087164166443RH676212217.11    1 AC000087
S/G/Y/R/B/O NT_011519AC000088164507953RH9893229.72    1AC000082, AC000071, AC000082, AC000088
S/G/Y/R/B/O NT_011519AC000088164507963RH670172217.11    1AC000082, AC000071, AC000082, AC000088
S/G/Y/R/B/O NT_011519AC000082164641643          
S/G/Y/R/B/O NT_011519AC000070164889083          
S/G/Y/R/B/O NT_011519AC000086165132133          
S/G/Y/R/B/O NT_011519AC000077165538133          
S/G/Y/R/B/O NT_011519AC002475165874973          
S/G/Y/R/B/O NT_011519AC000067165921143          
S/G/Y/R/B/O NT_011519AC000093166326393          
S/G/Y/R/B/O NT_011519AC000091166803253RH489252217.11    1 AC000091
S/G/Y/R/B/O NT_011519AC000089167121013          


  NT_011519 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011519AC000076167739203RH76547223.53    1 AC000076
S/G/Y/R/B/O NT_011519AC000076167756503RH46328221.04    1 AC000076
S/G/Y/R/B/O NT_011519AC000076167776223RH388112217.11    1 AC000076
S/G/Y/R/B/O NT_011519AC000076167779983RH577632217.11  2218.801 AC000076
S/G/Y/R/B/O NT_011519AC000078167828523          
S/G/Y/R/B/O NT_011519AC000090168400973RH479092223.15    1 AC000090
S/G/Y/R/B/O NT_011519AC000090168588533RH577862223.78  227.601AC000080, AC000080, AC000090
S/G/Y/R/B/O NT_011519AC000080168880383RH930762217.11    1AC005663, AC000080, AC005663
S/G/Y/R/B/O NT_011519AC000080168965773RH17808221.50    1AC005663, AC000074, AC000080, AC005663, Z26491
S/G/Y/R/B/O NT_011519AC000080168974933RH57849224.54  222.001AC005663, AC000074, AC000080, AC005663
S/G/Y/R/B/O NT_011519AC005663169002043          
S/G/Y/R/B/O NT_011519AC006547169930813RH933112217.11    1 AC000097, AC005664, AC006547
S/G/Y/R/B/O NT_011519AC006547169948293RH671512217.11    1 AC000075, AC000097, AC005664, AC006547
S/G/Y/R/B/O NT_011519AC006547170086693RH1034702217.99    1 AC000083, AC000097, AC005664, AC006547
S/G/Y/R/B/O NT_011519AC006547170401273RH576892217.99  2217.301 AC000083, AC000097, AC006547
S/G/Y/R/B/O NT_011519AC006547170402023RH782492217.11    1 AC000083, AC000097, AC006547
S/G/Y/R/B/O NT_011519AC006547170548593RH57717228.24  228.901 AC000097, AC006547
S/G/Y/R/B/O NT_011519AC006547170548733RH577052217.11  2218.701 AC000097, AC006547, AC006549
S/G/Y/R/B/O NT_011519AC006547170725893RH266642210.87    1 AC000097, AC006547, AC006549, AC058790
S/G/Y/R/B/O NT_011519AC006547170740103RH917902217.11    1 AC000097, AC006547, AC006549, AC058790
S/G/Y/R/B/O NT_011519AC007663171692383RH578842217.11  2218.701 AC006549, AC007663, AC058790
S/G/Y/R/B/O NT_011519AC007663172021753RH70290220.00    2AC007326, AC006549, AC007326, AC007663, AC058790
S/G/Y/R/B/O NT_011519 - RH1022352210.98    1AC005500, AC007731, AC005500, AC007731
S/G/Y/R/B/O NT_011519 - WI-7024    224.501AC002470, AC007308, AC002470, AC007308, M58600
S/G/Y/R/B/O NT_011519 - RH1022642217.99    1AC005500, AC007731, AC005500, AC007731
S/G/Y/R/B/O NT_011519 - WI-328    224.501AC004033, AC004033
S/G/Y/R/B/O NT_011519 - RH271672218.71    0AC004471, AC004471, AL359537, AL391096, L77570
S/G/Y/R/B/O NT_011519 - SGC31580    2217.301AC005500, AC007731, AC005500, AC007731, AF072567
S/G/Y/R/B/O NT_011519 - RH368412216.90    0AC016026, AC007845, AC016026
S/G/Y/R/B/O NT_011519 - RH388472217.11    1AC005500, AC007731, AC005500, AC007731, AL359452
S/G/Y/R/B/O NT_011519 - RH68848229.72    1AC002470, AC007308, AC002470, AC005407, AC005408, AC007308, AF278704
S/G/Y/R/B/O NT_011519 - RH743952220.31    1Z82201, Z82201
S/G/Y/R/B/O NT_011519 - RH778132217.11    0 More than 15
S/G/Y/R/B/O NT_011519 - RH77816228.56    0  
S/G/Y/R/B/O NT_011519 - RH779802213.14    0AC005300, AC006946, AC005300, AC006946
S/G/Y/R/B/O NT_011519 - RH781862217.11    0  
S/G/Y/R/B/O NT_011519 - RH916272220.41    0  
S/G/Y/R/B/O NT_011519 - RH937442210.98    1AC005500, AC007731, AC005500, AC007731, AL359452