Home    Genome Browser    BLAT Search    Help
  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_004852
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004852AC053509393245561          
S/G/Y/R/B/O NT_004852AL391730393487261WI-8986    139.701 AL391730
S/G/Y/R/B/O NT_004852AL391730393492601RH181001121.24    1 AL391730
S/G/Y/R/B/O NT_004852AL391730393496011RH468861131.64    1 AL391730
S/G/Y/R/B/O NT_004852AL391730393528281RH991631125.31    1 AL391730
S/G/Y/R/B/O NT_004852AL391730403432361RH707181125.31    1 AL391730
S/G/Y/R/B/O NT_004852AL391730403432391RH783711124.58    1 AL391730
S/G/Y/R/B/O NT_004852AL391730403432641SGC32278    1121.401 AL391730
S/G/Y/R/B/O NT_004852AC093151406248411CHLC.GATA65H06    1137.901 AC093151
S/G/Y/R/B/O NT_004852AL512599394528211RH680171125.20    2AL663070, AL512599, AL663070
S/G/Y/R/B/O NT_004852AL512599394533351RH638201125.20  1138.702AL663070, AF022211, AL512599, AL663070, L42809
S/G/Y/R/B/O NT_004852AL512599394533381RH102121121.03    2AL663070, AF022211, AL512599, AL663070, L42809
S/G/Y/R/B/O NT_004852AL512599394545201RH258831139.72    2AL663070, AF022211, AL512599, AL663070, L42809
S/G/Y/R/B/O NT_004852AL512599394841321WI-5252    1121.201 AL512599
S/G/Y/R/B/O NT_004852AL512599395463871RH362341124.58    1 AL512599
S/G/Y/R/B/O NT_004852AL512599395483141RH181161124.58    1 AL512599
S/G/Y/R/B/O NT_004852AL512599395653381RH643131124.58    1 AL512599
S/G/Y/R/B/O NT_004852AL512599395700651RH654421125.31    1 AL512599
S/G/Y/R/B/O NT_004852AL512599395746581RH655271131.54    1 AL512599
S/G/Y/R/B/O NT_004852AL356424395790663          
S/G/Y/R/B/O NT_004852AL050341396238893WI-12261    1143.001 AL050341
S/G/Y/R/B/O NT_004852AL050341396238893RH501411132.49    1 AL050341
S/G/Y/R/B/O NT_004852AL050341396246263RH173111125.31    1 AL050341
S/G/Y/R/B/O NT_004852AL050341396251803RH638051124.58    1 AL050341
S/G/Y/R/B/O NT_004852AL050341396251803WI-11868    1112.201 AL050341
S/G/Y/R/B/O NT_004852AL050341396255503RH672121125.31    1 AL050341
S/G/Y/R/B/O NT_004852AL050341396340803RH493481122.9512263.00  1 AL050341
S/G/Y/R/B/O NT_004852AL050341396362833RH925611125.31    1 AL050341
S/G/Y/R/B/O NT_004852AL050341396413043RH766761130.60    1 AL050341
S/G/Y/R/B/O NT_004852AL050341396415353RH938041125.31    1 AL050341
S/G/Y/R/B/O NT_004852AL050341396420723RH465961139.51    1 AL050341
S/G/Y/R/B/O NT_004852AL050341396786843RH641981122.9512272.00  1 AL050341
S/G/Y/R/B/O NT_004852AL050341396786843SGC34567    1121.401 AL050341
S/G/Y/R/B/O NT_004852AL050341396787793RH251181125.31    1 AL050341
S/G/Y/R/B/O NT_004852AL050341396788403RH645751124.58    1 AL050341
S/G/Y/R/B/O NT_004852AL050341396854113RH1030361131.08    1 AC025994, AL050341
S/G/Y/R/B/O NT_004852AL050341396855503RH643021125.3112272.00  1 AC025994, AL050341
S/G/Y/R/B/O NT_004852AL050341396855503SGC35672    1121.401 AC025994, AL050341
S/G/Y/R/B/O NT_004852AL050341396856333RH692071124.58    1 AC025994, AF019406, AL050341
S/G/Y/R/B/O NT_004852AL050341396971253RH642401124.58  1142.801 AC025994, AF019406, AL050341
S/G/Y/R/B/O NT_004852AL050341396972093RH675191125.31    1 AC025994, AF019406, AL050341
S/G/Y/R/B/O NT_004852AL031985397751483RH502131125.3612279.001142.601 AL031985
S/G/Y/R/B/O NT_004852AL031985397752573RH166061125.31    1 AC025994, AL031985
S/G/Y/R/B/O NT_004852AL031985398501163RH266341124.58    1AL603839, AL031985, AL603839
S/G/Y/R/B/O NT_004852AL031985398513883RH100241124.68    1AL603839, AL031985, AL603839
S/G/Y/R/B/O NT_004852AL031985398514433RH645891134.37    1AL603839, AL031985, AL603839
S/G/Y/R/B/O NT_004852AL603839399006843RH1020061125.31    1 AL603839
S/G/Y/R/B/O NT_004852AL356379399457133RH676811125.20    2AC079169, AC079169, AL356379
S/G/Y/R/B/O NT_004852AL031289399914783RH31564  12279.00  1 AL031289
S/G/Y/R/B/O NT_004852AL031289400055623RH254411125.31    1 AL031289


  NT_004852 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004852AL031289400182123RH38075  12303.00  1AL354914, AL031289, AL354914
S/G/Y/R/B/O NT_004852AL031289400747843RH644921135.69    1AL354914, AL031289, AL354914
S/G/Y/R/B/O NT_004852AL031289400909433RH464471121.34    1AL354914, AL031289, AL354914
S/G/Y/R/B/O NT_004852AL354914401225181RH497691125.3112303.00  1 AL354914
S/G/Y/R/B/O NT_004852AL354914401225181SGC34312    1121.201 AL354914
S/G/Y/R/B/O NT_004852AL354914401332031RH644571124.58    1 AL354914
S/G/Y/R/B/O NT_004852AL354914401332031WI-16819    1121.401 AL354914
S/G/Y/R/B/O NT_004852AL354914401559871RH506991125.31    1AL158843, AL158843, AL354914
S/G/Y/R/B/O NT_004852AL354914401559871TIGR-A003N32    1112.301AL158843, AL158843, AL354914
S/G/Y/R/B/O NT_004852AL354914401575241RH452741121.34    1AL158843, AL158843, AL354914
S/G/Y/R/B/O NT_004852AL158843402261381RH642331124.58  1139.501 AL158843
S/G/Y/R/B/O NT_004852AL110502404250103RH487701121.34    1AL391730, AL110502, AL391730
S/G/Y/R/B/O NT_004852AL110502404465993SGC44348    1140.501 AL110502
S/G/Y/R/B/O NT_004852AL110502404465993RH507611132.17    1 AL110502
S/G/Y/R/B/O NT_004852AL110502404531853RH115531124.58    1 AL110502, AL162262
S/G/Y/R/B/O NT_004852AL606484404829133RH799521141.56    1 AL162262, AL606484, AL663046
S/G/Y/R/B/O NT_004852AL445933407254493RH177271125.15    1 AL136127, AL354974, AL445933
S/G/Y/R/B/O NT_004852AL445933407532683RH119531125.31    1 AL136127, AL354974, AL445933
S/G/Y/R/B/O NT_004852AL445933407535953RH254821124.75    1 AL136127, AL354974, AL445933
S/G/Y/R/B/O NT_004852AL445933407537503RH915871124.58    1 AL136127, AL354974, AL445933
S/G/Y/R/B/O NT_004852AL445933407543713RH647131133.74    1 AL136127, AL354974, AL445933
S/G/Y/R/B/O NT_004852AL157905409607811AFMA289YD1    1142.301 AL157905
S/G/Y/R/B/O NT_004852AL451006410347783RH492861125.3112286.00  1 AC013579, AL451006
S/G/Y/R/B/O NT_004852AL356455410910763RH693441125.31    1 AC013579, AL356455
S/G/Y/R/B/O NT_004852AC105268411135571RH1280  12286.00  1 AC013579, AC105268
S/G/Y/R/B/O NT_004852AC105268411135621RH644881137.20    1 AC013579, AC105268
S/G/Y/R/B/O NT_004852AC105268411200201RH644331125.15    1 AC105268
S/G/Y/R/B/O NT_004852AC105268411200201SGC33246    1121.301 AC105268
S/G/Y/R/B/O NT_004852AC105268412447881WI-11150    1142.201AC008022, AC008022, AC105268
S/G/Y/R/B/O NT_004852AC008022412589621          
S/G/Y/R/B/O NT_004852AL158216412862533RH1791810259.25    2AL512654, AL591702, AL512654, AL591702
S/G/Y/R/B/O NT_004852AL158216412909423D1S463    1121.401AC008022, AC008022, AL158216
S/G/Y/R/B/O NT_004852AC114492413995061RH706061125.31    1 AC114492, U55058, Z70295
S/G/Y/R/B/O NT_004852AC114492414065711RH8318  12340.001144.401AC053509, AC053509, AC114492, X74322
S/G/Y/R/B/O NT_004852AC114492414065711RH503401130.87    1AC053509, AC053509, AC114492, X74322
S/G/Y/R/B/O NT_004852AC114492414066951RH692081126.44    1AC053509, AC053509, AC114492, X74322
S/G/Y/R/B/O NT_004852AC114492414204671RH473611131.54    1 AC114492, AL359754
S/G/Y/R/B/O NT_004852AC114492414232781RH920101126.44    1AC053509, AC053509, AC114492, AL359754
S/G/Y/R/B/O NT_004852AC096540414659151          
S/G/Y/R/B/O NT_004852AL513331416262091RH760441132.28    1 AL513331
S/G/Y/R/B/O NT_004852AL513331416370461RH507431127.66  1144.101 AL513331
S/G/Y/R/B/O NT_004852AL513331416585241RH655921126.44    1 AL355801, AL513331
S/G/Y/R/B/O NT_004852AL513331416599341WI-14032    1145.201 AL355801, AL513331
S/G/Y/R/B/O NT_004852AL513331416599341RH643291141.67    1 AL355801, AL513331
S/G/Y/R/B/O NT_004852AL513331416644861RH1040321126.44    1 AL355801, AL513331
S/G/Y/R/B/O NT_004852AL513331416658441RH259111139.41    1 AL355801, AL513331
S/G/Y/R/B/O NT_004852AL513331416660751RH118291139.41    1 AL355801, AL513331
S/G/Y/R/B/O NT_004852AL513331416661381RH168621126.44    1 AL355801, AL513331
S/G/Y/R/B/O NT_004852AL513331416661701RH369451127.36    1 AL355801, AL513331
S/G/Y/R/B/O NT_004852AL513331416676791RH497551126.27    1 AL355801, AL513331


  NT_004852 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004852AL513331416676791WI-21520    1121.201 AL355801, AL513331
S/G/Y/R/B/O NT_004852AL513331416744141RH990851133.84    1 AL355801, AL513331
S/G/Y/R/B/O NT_004852AL513331417038581RH485201133.84    1AL445669, AL355801, AL445669, AL513331
S/G/Y/R/B/O NT_004852AL445669417974233D1S193    1144.301 AL445669
S/G/Y/R/B/O NT_004852AL445669417974233RH132101127.5612323.00  1 AL445669
S/G/Y/R/B/O NT_004852AL445669418149753RH1042191127.56    1AL138788, AL138788, AL445669
S/G/Y/R/B/O NT_004852AL138788418880551WI-15744    1144.401 AL138788
S/G/Y/R/B/O NT_004852AL138788418880551RH497671133.16    1 AL138788
S/G/Y/R/B/O NT_004852AC098484419621673RH704671142.82    1 AC098484
S/G/Y/R/B/O NT_004852AC098484419757413RH1755  12350.00  1 AC098484
S/G/Y/R/B/O NT_004852AC098484419906923RH501941127.56  1144.201 AC098484
S/G/Y/R/B/O NT_004852AC098484419907403RH647901133.84    1 AC098484
S/G/Y/R/B/O NT_004852AC098484420097933RH1381  12362.00  1AL512353, AC098484, AL512353
S/G/Y/R/B/O NT_004852AC098484420199443RH929821127.56    1AL512353, AC098484, AL512353
S/G/Y/R/B/O NT_004852AC098484420199723WI-16985    1144.701AL512353, AL512353
S/G/Y/R/B/O NT_004852AC098484420199723RH644631134.78    1AL512353, AL512353
S/G/Y/R/B/O NT_004852AC098484420206083RH419691130.70    1AL512353, AC098484, AL512353
S/G/Y/R/B/O NT_004852AC098484420242573RH694411127.56    1AL512353, AC098484, AL512353
S/G/Y/R/B/O NT_004852AC098484420327653RH919421134.78    1AL512353, AC098484, AL512353
S/G/Y/R/B/O NT_004852AC098484420514483RH669331127.56    1AC023331, AC023331
S/G/Y/R/B/O NT_004852AC098484420515743RH988441127.56    1AC023331, AL512353, AC023331, AC098484, AL512353
S/G/Y/R/B/O NT_004852AC098484420576263RH711381126.44    1AC023331, AL512353, AC023331, AC098484, AL512353
S/G/Y/R/B/O NT_004852AL512353420885321RH797241129.07    1AC023331, AC023331, AL512353
S/G/Y/R/B/O NT_004852AL512353420890611WI-15933    1144.701AC023331, AC023331, AL512353
S/G/Y/R/B/O NT_004852AL512353420890611RH642131134.78    1AC023331, AC023331, AL512353
S/G/Y/R/B/O NT_004852AL512353420965051RH1020541127.56    1AC023331, AC023331, AL512353
S/G/Y/R/B/O NT_004852AL512353421136051RH807252587.90    5AC017071, AC023331, AC073325, AC083803, AL442647, Z84720, AC017071, AC023331, AC073325, AC083803, AL442647, Z84720
S/G/Y/R/B/O NT_004852AC023331421704021RH174201127.56    1AC099795, AC023331, AC099795
S/G/Y/R/B/O NT_004852AC023331421706171RH689801127.56    1AC099795, AC023331, AC099795
S/G/Y/R/B/O NT_004852AC023331421707521RH1375  12356.00  1AC099795, AC023331, AC099795
S/G/Y/R/B/O NT_004852AC023331421707641RH682581133.43    1AC099795, AC023331, AC099795
S/G/Y/R/B/O NT_004852AC023331421708631RH914711127.56    1AC099795, AC023331, AC099795
S/G/Y/R/B/O NT_004852AC023331421713681RH643391127.56  1144.701AC099795, AC023331, AC099795
S/G/Y/R/B/O NT_004852AC023331421713761RH110191127.56    1AC099795, AC023331, AC099795
S/G/Y/R/B/O NT_004852AC099795421963611RH1019471132.49    2AC023331, AL358236, AC023331, AC099795, AL358236
S/G/Y/R/B/O NT_004852AC099795422534371RH779481129.07    2AL358236, AC099795, AL161637, AL358236
S/G/Y/R/B/O NT_004852 - RH1045491126.44    0  
S/G/Y/R/B/O NT_004852 - RH1201  12345.00  1AL356378, AC015706, AL356378
S/G/Y/R/B/O NT_004852 - WI-14341    1145.200 AC005043, AL035417
S/G/Y/R/B/O NT_004852 - RH1045631124.58    0  
S/G/Y/R/B/O NT_004852 - RH1215  12345.00  1AL356378, AC015706, AL356378
S/G/Y/R/B/O NT_004852 - RH150591127.56    0AL138788, AL138788
S/G/Y/R/B/O NT_004852 - RH14117  12345.00  1AL356378, AC015706, AL356378
S/G/Y/R/B/O NT_004852 - RH175781125.97    0 AL355519, AL583862
S/G/Y/R/B/O NT_004852 - RH14186  12345.00  1AL356378, AC015706, AL356378
S/G/Y/R/B/O NT_004852 - RH479901125.97    1AL139220, AC005087, AL139220
S/G/Y/R/B/O NT_004852 - RH37798  12345.00  1AL356378, AC015706, AL356378
S/G/Y/R/B/O NT_004852 - RH709591125.97    1AC092815, AC011772, AC092815
S/G/Y/R/B/O NT_004852 - RH7982  12267.00  1AL136373, AL136373, AL357392
S/G/Y/R/B/O NT_004852 - RH754721127.56    1AL122004, AC019268, AL122004


  NT_004852 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004852 - RH930601125.97    0 AC005043, AL035417
S/G/Y/R/B/O NT_004852 - RH983521125.31    0AL110502, AL110502