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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_004836
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004836AL1334182319413773RH497091740.49  1910.401 AL133418, AL356781, AL592290
S/G/Y/R/B/O NT_004836AL1334182319562643RH638881740.49  1910.401 AL133418, AL356781, AL592290
S/G/Y/R/B/O NT_004836AL3919942320338252RH643431740.49  1910.401 AL356781, AL391994
S/G/Y/R/B/O NT_004836AL3919942320340422RH639511741.50  1910.401 AL356781, AL391994
S/G/Y/R/B/O NT_004836AL3919942321316102RH643751744.03  1910.401 AL391994
S/G/Y/R/B/O NT_004836AL3919942321331822RH919991740.49    1 AL391994
S/G/Y/R/B/O NT_004836AL3575562321470993          
S/G/Y/R/B/O NT_004836AL6722372322251733RH498931740.49  1910.401 AL672237
S/G/Y/R/B/O NT_004836AL6722372322251733RH459971744.13    1 AL672237
S/G/Y/R/B/O NT_004836AL6722372322377073RH706881740.49    1AL135928, AL135928, AL672237
S/G/Y/R/B/O NT_004836AL1359282322388863          
S/G/Y/R/B/O NT_004836AL6722382323366573RH469401740.49    1 AL162611, AL672238
S/G/Y/R/B/O NT_004836AL6722382323406483RH710641740.4919059.001910.401 AL162611, AL672238
S/G/Y/R/B/O NT_004836AL5838442323574983          
S/G/Y/R/B/O NT_004836AL3907652324499673RH501101740.4919055.001910.401 AC009334, AL390765
S/G/Y/R/B/O NT_004836AL3907652324499673RH682111740.49    1 AC009334, AL390765
S/G/Y/R/B/O NT_004836AL3907652324506653RH1285  19051.00  1 AC009334, AL390765
S/G/Y/R/B/O NT_004836AL3907652324751423RH363291740.49    1 AC009334, AL390765
S/G/Y/R/B/O NT_004836AL1219972325192613D1S235    1910.401 AC009334, AL121997
S/G/Y/R/B/O NT_004836AL1219972325192613RH133541740.4919047.00  1 AC009334, AL121997
S/G/Y/R/B/O NT_004836AL1219972325577193WI-2822    1910.401 AC009334, AL121997
S/G/Y/R/B/O NT_004836AL1219972326151433RH500101740.49  1910.401 AL121997
S/G/Y/R/B/O NT_004836AL1219972326151433RH163701742.60    1 AL121997
S/G/Y/R/B/O NT_004836AL1332862326992063RH711091740.4919043.00  1 AL133286
S/G/Y/R/B/O NT_004836AL1332862327007473RH756711737.64    1 AL133286
S/G/Y/R/B/O NT_004836AL1391612327646663RH170241740.49    1 AL139161
S/G/Y/R/B/O NT_004836AL1391612327651933RH459331740.49    1 AL139161
S/G/Y/R/B/O NT_004836AL1391612327656173RH499041740.49  1910.401 AL139161
S/G/Y/R/B/O NT_004836AL1220182328181493          
S/G/Y/R/B/O NT_004836AL1391622329972593RH474461741.50    1 AC073638, AL139162
S/G/Y/R/B/O NT_004836AL1391622329978893RH646431740.09    1 AC073638, AL139162
S/G/Y/R/B/O NT_004836AL1391622329996963RH1038651740.49    1 AC073638, AL139162
S/G/Y/R/B/O NT_004836AL1391622330035613RH643221740.49  1910.401 AC073638, AL139162
S/G/Y/R/B/O NT_004836AL1391622330045073RH642831740.4919035.001910.401 AL139162
S/G/Y/R/B/O NT_004836AL4503092330320593RH786221740.49    1 AC073638, AL450309
S/G/Y/R/B/O NT_004836AL3546932331944033CHLC.GGAA6F06    1910.401 AL354693
S/G/Y/R/B/O NT_004836AL3546932332470523RH508131740.49  1910.401 AL354693, AL390764
S/G/Y/R/B/O NT_004836AL3546932332561293RH30717  19016.00  1 AL354693
S/G/Y/R/B/O NT_004836AL1361052333304123RH756831739.07    1AL359921, AF193806, AL135843, AL136105, AL359921, AL390764
S/G/Y/R/B/O NT_004836AL1361052333368363RH123681740.49    1AL359921, AF193806, AL135843, AL136105, AL359921, AL390764
S/G/Y/R/B/O NT_004836AL1361052333368403RH453321740.49    1AL359921, AF193806, AL136105, AL359921
S/G/Y/R/B/O NT_004836AL1361052333376413WI-12386    1910.401AL359921, AF193806, AL135843, AL136105, AL359921, AL390764
S/G/Y/R/B/O NT_004836AL1361052333376413RH637821737.43    1AL359921, AF193806, AL135843, AL136105, AL359921, AL390764
S/G/Y/R/B/O NT_004836AL1361052333377923RH505421740.49  1910.401 AF193806
S/G/Y/R/B/O NT_004836AL1361052333382053RH688291742.60    1AL359921, AF193806, AL135843, AL136105, AL359921, AL390764
S/G/Y/R/B/O NT_004836AL1361052333394233RH637951742.60  1912.001AL359921, AF193806, AL135843, AL136105, AL359921, AL390764
S/G/Y/R/B/O NT_004836AL1361052333394243RH111081742.60    1AL359921, AF193806, AL135843, AL136105, AL359921, AL390764
S/G/Y/R/B/O NT_004836AL1361052333400723RH638321742.60    1AL359921, AL135843, AL136105, AL359921, AL390764
S/G/Y/R/B/O NT_004836AL1361052333400723WI-12648    1910.301AL359921, AL135843, AL136105, AL359921, AL390764
S/G/Y/R/B/O NT_004836AL1361052333405273RH499841742.72  1912.001AL359921, AF193806, AL135843, AL136105, AL359921, AL390764


  NT_004836 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004836AL1361052333405273RH787371742.60    1AL359921, AF193806, AL135843, AL136105, AL359921, AL390764
S/G/Y/R/B/O NT_004836AL1361052333405653RH163501742.60    1AL359921, AF193806, AL135843, AL136105, AL359921, AL390764
S/G/Y/R/B/O NT_004836AL1361052333408613RH14651  18997.001912.001AL359921, AF193806, AL135843, AL136105, AL359921, AL390764
S/G/Y/R/B/O NT_004836AL1361052333408613WI-20466    1912.001AL359921, AF193806, AL135843, AL136105, AL359921, AL390764
S/G/Y/R/B/O NT_004836AL1361052333408613RH503851738.16    1AL359921, AF193806, AL135843, AL136105, AL359921, AL390764
S/G/Y/R/B/O NT_004836AL1361052333409493RH167171742.60    1AL359921, AF193806, AL135843, AL136105, AL359921, AL390764
S/G/Y/R/B/O NT_004836AL1361052333412033RH1030531742.60    1AL359921, AF193806, AL135843, AL136105, AL359921, AL390764
S/G/Y/R/B/O NT_004836AL1361052333414503RH505481743.31  1912.001AL359921, AF193806, AL135843, AL136105, AL359921, AL390764
S/G/Y/R/B/O NT_004836AL3599212333531283          
S/G/Y/R/B/O NT_004836AL3591852335514143RH14035  19024.00  1 AL357554, AL359185
S/G/Y/R/B/O NT_004836AL3591852335523353RH114451742.60    1 AL357554, AL359185
S/G/Y/R/B/O NT_004836AL3591852335529603RH506621742.90  1912.001 AL357554, AL359185
S/G/Y/R/B/O NT_004836AL3592592336601323RH786701742.72    1 AC079975, AC080149, AL359259
S/G/Y/R/B/O NT_004836AL3592592336864703RH759201744.61    1 AC074231, AC079975, AC080149, AL359259
S/G/Y/R/B/O NT_004836AL3592592336888443RH704741744.09    1 AC074231, AC079975, AC080149, AL359259
S/G/Y/R/B/O NT_004836AL3592592336889513RH671021744.09    1 AC074231, AC079975, AC080149, AL359259
S/G/Y/R/B/O NT_004836AL3592592336891903RH259681742.80    1 AC074231, AC079975, AC080149, AL359259
S/G/Y/R/B/O NT_004836AL3592592337802643WI-2976    1913.501 AC074231, AC079975, AC080149, AL359259
S/G/Y/R/B/O NT_004836AL5961332338030483          
S/G/Y/R/B/O NT_004836AL3918092339011852RH509061743.51  1912.001 AL356582, AL391809
S/G/Y/R/B/O NT_004836AL3567732339964243          
S/G/Y/R/B/O NT_004836AL4454732341115123AFMA045ZC5    1913.501 AC007990, AL445473
S/G/Y/R/B/O NT_004836AL4454732341512873WI-14972    1913.501 AL445473
S/G/Y/R/B/O NT_004836AL4454732341512873RH642241737.43    1 AL445473
S/G/Y/R/B/O NT_004836AL4420652342845963          
S/G/Y/R/B/O NT_004836AC0222482343872581          
S/G/Y/R/B/O NT_004836AL3653322344080343          
S/G/Y/R/B/O NT_004836AL5131302345743413          
S/G/Y/R/B/O NT_004836AL3599242346446043RH508931743.72  1913.501 AL358212, AL359924
S/G/Y/R/B/O NT_004836AL3599242346446043RH361751744.09    1 AL358212, AL359924
S/G/Y/R/B/O NT_004836AL3599242346446243RH683221744.09    1 AL358212, AL359924
S/G/Y/R/B/O NT_004836AL3599242346446963RH14619  18403.00  1 AL358212, AL359924
S/G/Y/R/B/O NT_004836AL3599242346453903RH710141744.09  1913.501 AL358212, AL359924
S/G/Y/R/B/O NT_004836AL3599242346453923RH711211744.09    1 AL358212, AL359924
S/G/Y/R/B/O NT_004836AL3599242346454453RH167651744.09    1 AL358212, AL359924
S/G/Y/R/B/O NT_004836AL3599242346454453RH751841744.13    1 AL358212, AL359924
S/G/Y/R/B/O NT_004836AL5903962347396253RH1036831744.09    1AC024498, AC024498, AL358212, AL590396
S/G/Y/R/B/O NT_004836AL5903962348266233AFMA044XC9    1910.801AL359203, AL359203, AL590396
S/G/Y/R/B/O NT_004836AC0244982348320481          
S/G/Y/R/B/O NT_004836AL3592032348422652          
S/G/Y/R/B/O NT_004836 - RH1182  19005.00  1AL590133, AL691467, AL590133, AL691467
S/G/Y/R/B/O NT_004836 - RH1392  19006.00  1AL391069, AL391069, AL592111
S/G/Y/R/B/O NT_004836 - RH1779  19006.00  1AC027069, AL355860, AL356292, AC027069, AL355860, AL356292
S/G/Y/R/B/O NT_004836 - RH8645  19005.00  1AC027069, AL355860, AL356292, AC027069, AJ251863, AL355860, AL356292
S/G/Y/R/B/O NT_004836 - RH8763  19024.00  2AL121602, AL122001, AL157894, AL450998, AC058783, AC058783, AL121602, AL122001, AL157894, AL360086, AL450998, S61826