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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_004658
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004658AC098656876918501RH500051253.75  1254.701 AC098656
S/G/Y/R/B/O NT_004658AL450462878409911          
S/G/Y/R/B/O NT_004658AL161797880099023RH474201252.13    1 AC079091, AL161797, AL512367
S/G/Y/R/B/O NT_004658AL161797880115043RH751211252.13    1 AC079091, AL161797, AL512367
S/G/Y/R/B/O NT_004658AL161797880118663RH684411250.27    1 AC079091, AL161797, AL512367
S/G/Y/R/B/O NT_004658AL161797880154513RH695791251.39    1 AL161797
S/G/Y/R/B/O NT_004658AL161797880169653RH483271252.13    1 AC079091, AL161797, AL512367
S/G/Y/R/B/O NT_004658AL391497881094503RH695531250.79    1 AC079091, AL391497, AL512367
S/G/Y/R/B/O NT_004658AC099568882187683          
S/G/Y/R/B/O NT_004658AC093423883084143RH503841253.21  1252.901AC099568, AC093423, AC099568
S/G/Y/R/B/O NT_004658AC093423883084143RH457851253.21    1AC099568, AC093423, AC099568
S/G/Y/R/B/O NT_004658AC093423883244493RH644501250.27  1252.801AC099568, AC093423, AC099568
S/G/Y/R/B/O NT_004658AC093423883261673RH992761248.84    1 AC093423
S/G/Y/R/B/O NT_004658AC093423883283523RH654671248.84    1AC099568, AC093423, AC099568
S/G/Y/R/B/O NT_004658AC093423883305413RH1029571248.84    1AC099568, AC093423, AC099568
S/G/Y/R/B/O NT_004658AC093423883375713AFMA205XD5    1252.801 AC093423
S/G/Y/R/B/O NT_004658AC099569884376853RH507191242.43  1261.601AC093423, AC093423, AC099569
S/G/Y/R/B/O NT_004658AC099569884475833RH508441247.44  1252.801 AC021385, AC099569
S/G/Y/R/B/O NT_004658AC099569884476793RH254371247.44    1 AC021385, AC099569
S/G/Y/R/B/O NT_004658AC099569884488733RH503031247.24  1252.801 AC021385, AC099569
S/G/Y/R/B/O NT_004658AC099569884489433RH105391247.44    1 AC021385, AC099569
S/G/Y/R/B/O NT_004658AC099569884489473RH108841247.44    1 AC021385, AC099569
S/G/Y/R/B/O NT_004658AL596214885344543          
S/G/Y/R/B/O NT_004658AC116040886174951RH931751248.65    2AL139416, AL160008, AC116040, AL139416, AL160008, AL691464
S/G/Y/R/B/O NT_004658AC116040886197731RH266611247.24    1 AC116040, AL691464
S/G/Y/R/B/O NT_004658AL355818886907952          
S/G/Y/R/B/O NT_004658AL136382888392763RH502591243.9714232.001247.201AL354988, AL136382, AL354988
S/G/Y/R/B/O NT_004658AL136382888483863RH643971242.75  1247.101AL354988, AL136382, AL354988
S/G/Y/R/B/O NT_004658AL358950889486081RH110391243.23    1 AL358950
S/G/Y/R/B/O NT_004658AL354988888932191          
S/G/Y/R/B/O NT_004658AC068071889575241          
S/G/Y/R/B/O NT_004658AL122002889777523          
S/G/Y/R/B/O NT_004658AL356270890807702          
S/G/Y/R/B/O NT_004658AL049597892123403RH704481240.96    1AC068071, AL356270, AC068071, AL049597, AL356270
S/G/Y/R/B/O NT_004658AL049597892124093RH644561241.4814237.001246.201AC068071, AL356270, AC068071, AL049597, AL356270
S/G/Y/R/B/O NT_004658AL049597892431063RH647681241.4814237.00  1AC068071, AC068071, AL049597
S/G/Y/R/B/O NT_004658AL049597892471033RH646991239.73    1 AL049597
S/G/Y/R/B/O NT_004658AL049597892478483RH117841241.06    1 AL049597
S/G/Y/R/B/O NT_004658AL355981893082353          
S/G/Y/R/B/O NT_004658AL121989893627033RH638821241.00  1245.402AF288992, AF267986, AF288992, AL121989
S/G/Y/R/B/O NT_004658AL121989893628523RH642161240.96  1247.302AF288992, AF267986, AF288992, AL121989
S/G/Y/R/B/O NT_004658AL121989893633473RH644171240.96  1245.802AF288992, AF267986, AF288992, AL121989
S/G/Y/R/B/O NT_004658AL121989893781703RH1029121242.64    2AF288992, AF288992, AL121989
S/G/Y/R/B/O NT_004658AL121989894368443RH707331242.75    1 AL121989
S/G/Y/R/B/O NT_004658AC093155895266753RH778881244.91    1 AC093155, AL445427
S/G/Y/R/B/O NT_004658AC093155896073143RH693541247.54    1 AC093155, AL445427
S/G/Y/R/B/O NT_004658AC093155896077693SGC32414    1248.401 AC093155, AL445427
S/G/Y/R/B/O NT_004658AC093155896077693RH645741247.64    1 AC093155, AL445427
S/G/Y/R/B/O NT_004658AC093155896095543RH647721247.6414237.00  1 AC093155, AL445427
S/G/Y/R/B/O NT_004658AL139139896342613RH927481244.17    1 AL139139


  NT_004658 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004658AL139139896680883RH693861244.91    1 AL139139
S/G/Y/R/B/O NT_004658AC099062897827701WI-3965    1249.401AC092392, AC092392, AC099062
S/G/Y/R/B/O NT_004658AC092392898266363RH37883  14247.00  1 AC092392
S/G/Y/R/B/O NT_004658AC092392898299863RH638271244.51  1249.401AC104838, AC092392, AC104838
S/G/Y/R/B/O NT_004658AC092392898317803RH156381244.28    1AC104838, AC092392, AC104838
S/G/Y/R/B/O NT_004658AC092392898318513RH639201243.90    1AC104838, AC092392, AC104838
S/G/Y/R/B/O NT_004658AC092392898318513RH108461247.54    1AC104838, AC092392, AC104838
S/G/Y/R/B/O NT_004658AC092392898330983RH360701245.11    1AC104838, AC092392, AC104838
S/G/Y/R/B/O NT_004658AC092392898336363RH122831245.11    1AC104838, AC092392, AC104838
S/G/Y/R/B/O NT_004658AC104838898698761          
S/G/Y/R/B/O NT_004658AC103552899285621          
S/G/Y/R/B/O NT_004658AC099064900893993          
S/G/Y/R/B/O NT_004658AC024488901389541          
S/G/Y/R/B/O NT_004658AL356103901444123          
S/G/Y/R/B/O NT_004658AL590786902564813          
S/G/Y/R/B/O NT_004658AL445437902854573RH509071247.24  1251.101 AC011793, AL445437
S/G/Y/R/B/O NT_004658AL445437902854573RH1953  14242.00  1 AC011793, AL445437
S/G/Y/R/B/O NT_004658AL355144903703533RH154831247.5414242.00  1 AL355144
S/G/Y/R/B/O NT_004658AL355144904957773AFM263XF9    1251.101 AL355144
S/G/Y/R/B/O NT_004658AL451004904979901          
S/G/Y/R/B/O NT_004658AC093578905534951WI-7492    1252.801AC016015, AL451004, AC016015, AC093578, AL451004
S/G/Y/R/B/O NT_004658AC016015905748141          
S/G/Y/R/B/O NT_004658AC026138906747931          
S/G/Y/R/B/O NT_004658AL445438906996663          
S/G/Y/R/B/O NT_004658AL049861908705273WI-10087    1252.801 AL049861, AL356436
S/G/Y/R/B/O NT_004658AC093432909486351          
S/G/Y/R/B/O NT_004658AC098932910656731          
S/G/Y/R/B/O NT_004658AC104459910854581RH690301253.16    2AC021586, AC021586, AC104459
S/G/Y/R/B/O NT_004658AC104459910891111RH691431247.44    1 AC104459
S/G/Y/R/B/O NT_004658AC104459916623331RH267381242.43    1AC021689, AC099063, AC021689, AC099063, AC104459
S/G/Y/R/B/O NT_004658AL136381912291723RH452331248.94    1AL451004, AL136381, AL451004
S/G/Y/R/B/O NT_004658AL136381912292073RH677311247.54    1AL451004, AL136381, AL451004
S/G/Y/R/B/O NT_004658AL136381913170503RH270861242.22    1 AL136381, AL359825
S/G/Y/R/B/O NT_004658AL136381913409323RH507471251.60  1251.001 AL136381, AL359825
S/G/Y/R/B/O NT_004658AL136381913409603RH916641244.17    1 AL136381
S/G/Y/R/B/O NT_004658AL445991913603863RH1874  14336.00  1 AL359825, AL445991
S/G/Y/R/B/O NT_004658AL445991913605263RH126611247.44    1 AL359825, AL445991
S/G/Y/R/B/O NT_004658AL445991913605303RH708461247.54    1 AL359825, AL445991
S/G/Y/R/B/O NT_004658AL445991913606603RH506001244.07  1261.001 AL359825, AL445991
S/G/Y/R/B/O NT_004658AL445991914628223RH506231244.51  1251.101AL139416, AL139416, AL445991
S/G/Y/R/B/O NT_004658AL139416914869061RH697041247.44    1 AL139416
S/G/Y/R/B/O NT_004658AL139416914879431RH497911244.28  1259.101AL121573, AL121573, AL139416
S/G/Y/R/B/O NT_004658AL139416914944611RH687081247.44    1 AL139416
S/G/Y/R/B/O NT_004658AL139416915142721RH781421251.92    1 AL139416
S/G/Y/R/B/O NT_004658AL160008915590743RH931751248.65    2AC116040, AL139416, AC116040, AL139416, AL160008, AL691464
S/G/Y/R/B/O NT_004658AL160008915597723RH496331252.5614356.001257.301AL139416, AL139416, AL160008
S/G/Y/R/B/O NT_004658AL160008915606563RH642141247.2414373.001252.701 AL160008
S/G/Y/R/B/O NT_004658AC021689917417622RH661281248.65    1AC099063, AC021689, AC099063
S/G/Y/R/B/O NT_004658AC021689917713002RH642591247.44  1252.801AC099063, AC021689, AC099063
S/G/Y/R/B/O NT_004658AC099063916976041          


  NT_004658 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004658 - RH1020771247.44    0AC093155, AC093155, AL445427
S/G/Y/R/B/O NT_004658 - RH13918  14234.00  1AL357314, AL357314, AL359206, AL592082
S/G/Y/R/B/O NT_004658 - WI-7443    1245.300  
S/G/Y/R/B/O NT_004658 - RH690431253.21    0AC018785, AC018785
S/G/Y/R/B/O NT_004658 - RH988531241.48    0AL590113, AF097732, AL590113