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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_004424
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004424AL356977482498441          
S/G/Y/R/B/O NT_004424AC099677483499111RH1771  12595.00  1 AC020781, AC099677
S/G/Y/R/B/O NT_004424AC099677483500251RH674171152.53    1 AC020781, AC099677
S/G/Y/R/B/O NT_004424AC099677483610451SGC34495    1173.901 AC020781, AC099677
S/G/Y/R/B/O NT_004424AC099677483610451RH644001153.75    1 AC020781, AC099677
S/G/Y/R/B/O NT_004424AC099677483610451RH701251152.63    1 AC020781, AC099677
S/G/Y/R/B/O NT_004424AC099677483611841RH263681152.63    1 AC020781, AC099677
S/G/Y/R/B/O NT_004424AC099677483992491RH364971665.25    2AL031722, AC012180, AC099677, AE006639, AL031722
S/G/Y/R/B/O NT_004424AC099796482867181          
S/G/Y/R/B/O NT_004424AC025990483280521          
S/G/Y/R/B/O NT_004424AL445183485586183RH799101152.53    1 AC022728, AL358233, AL445183
S/G/Y/R/B/O NT_004424AL445183485591223RH691761152.53    1 AC022728, AL358233, AL445183
S/G/Y/R/B/O NT_004424AL445183485930543RH683991152.63    1 AC022728, AL358233, AL445183
S/G/Y/R/B/O NT_004424AL445183485951703RH942291152.63    1 AC022728, AL358233, AL445183
S/G/Y/R/B/O NT_004424AL606760487213643RH645151152.63    1AC093564, AC022728, AC093564, AL606760
S/G/Y/R/B/O NT_004424AL606760487218843RH645171152.33    1AC093564, AC022728, AC093564, AL606760
S/G/Y/R/B/O NT_004424AL606760487222203RH645881152.63    1AC093564, AC022728, AC093564, AL606760
S/G/Y/R/B/O NT_004424AL606760487224043RH14341  12616.00  1AC093564, AC022728, AC093564, AL606760
S/G/Y/R/B/O NT_004424AL606760487376203RH707981152.63    1AC093564, AC093564, AL606760
S/G/Y/R/B/O NT_004424AL606760487412003RH919601153.43    1AC093564, AC093564, AL606760
S/G/Y/R/B/O NT_004424AL606760487502923SGC32417    1174.401AC093564, AC093564, AL606760
S/G/Y/R/B/O NT_004424AL606760487502923RH120141152.63    1AC093564, AC093564, AL606760
S/G/Y/R/B/O NT_004424AL606523487739723          
S/G/Y/R/B/O NT_004424AC093564488467091RH656361152.63    1AL356977, AC093564, AL356977
S/G/Y/R/B/O NT_004424AC093564488502331RH29964  12628.00  1 AC093564
S/G/Y/R/B/O NT_004424AL365445488909603RH929231152.63    1 AL365445
S/G/Y/R/B/O NT_004424AC105280489840281RH989101152.63    1 AC105280
S/G/Y/R/B/O NT_004424AC069175490032151          
S/G/Y/R/B/O NT_004424AL603915490413503          
S/G/Y/R/B/O NT_004424AL591720490518093          
S/G/Y/R/B/O NT_004424AL049745492452563RH638151153.35  1173.901AL391003, AL049745, AL391003
S/G/Y/R/B/O NT_004424AL049745492452663RH120741152.63    1AL391003, AL049745, AL391003
S/G/Y/R/B/O NT_004424AL049745492673553RH655511152.74    1AL391003, AL049745, AL391003
S/G/Y/R/B/O NT_004424AL391003493316191RH358021152.63    1 AL391003
S/G/Y/R/B/O NT_004424AL391003493316351RH805191152.63    1 AL391003
S/G/Y/R/B/O NT_004424AL031427493488233RH426841152.6312644.00  1 AL031427
S/G/Y/R/B/O NT_004424AL031427493898823RH638331152.6312644.001174.301 AL031427
S/G/Y/R/B/O NT_004424AL031427493907253RH800091150.97    1 AL031427
S/G/Y/R/B/O NT_004424AL031427494079813RH452041152.63    1 AL031427
S/G/Y/R/B/O NT_004424AL031427494476323RH1187  12639.00  1 AL031427
S/G/Y/R/B/O NT_004424AL353898495065633RH119341152.63    1 AL353898
S/G/Y/R/B/O NT_004424AL353898495098263RH647521152.63    1 AL353898
S/G/Y/R/B/O NT_004424AL353898495119323RH500811152.81    1 AL353898
S/G/Y/R/B/O NT_004424AL353898495119323WI-15470    1181.001 AL353898
S/G/Y/R/B/O NT_004424AL353898495244143RH271771152.63    1 AL353898
S/G/Y/R/B/O NT_004424AL353898495244513RH507961152.63    1 AL353898
S/G/Y/R/B/O NT_004424AL353898495244513SGC33632    1177.601 AL353898
S/G/Y/R/B/O NT_004424AL161915495829673          
S/G/Y/R/B/O NT_004424AL357673496495012RH696711152.63    1 AL357673
S/G/Y/R/B/O NT_004424AL357673496521882RH704871152.63    1 AL357673


  NT_004424 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004424AL357673496980422RH418971154.95    1 AL161644, AL357673
S/G/Y/R/B/O NT_004424AL357673497053982RH367201153.35    1 AL161644, AL357673
S/G/Y/R/B/O NT_004424AL357673497062332RH168891152.63    1 AL161644, AL357673
S/G/Y/R/B/O NT_004424AL357673497065232RH642001152.02  1173.901 AL161644, AL357673
S/G/Y/R/B/O NT_004424AL354778497356091          
S/G/Y/R/B/O NT_004424AL035415498479253RH779271152.63    1AL354778, AL035415, AL354778
S/G/Y/R/B/O NT_004424AL035415498529993RH704031152.63    1AL354778, AL035415, AL354778
S/G/Y/R/B/O NT_004424AL035415498530283RH265071152.63    1  
S/G/Y/R/B/O NT_004424AL035415498582533RH698131152.63    1AL354778, AL035415, AL354778
S/G/Y/R/B/O NT_004424AL035415498667193SGC32284    1173.601AL354778, AL035415, AL354778
S/G/Y/R/B/O NT_004424AL356458500331443RH496121144.04  1160.802AC022754, AC022754, AL356458
S/G/Y/R/B/O NT_004424AL591415501276763          
S/G/Y/R/B/O NT_004424AC013447503265363RH751371144.88    1 AC013447, AL691459
S/G/Y/R/B/O NT_004424AC013447503316763RH687231145.91    1AC096541, AC013447, AC096541, AL691459
S/G/Y/R/B/O NT_004424AC096541503815551CHLC.GATA72H07    1163.601 AC096541
S/G/Y/R/B/O NT_004424AL451079504757661          
S/G/Y/R/B/O NT_004424AL356289506678803RH1039381145.81    1AL109659, AL109659, AL139427, AL356289
S/G/Y/R/B/O NT_004424AL109659507271943RH1035301145.81    1 AL109659
S/G/Y/R/B/O NT_004424AL109659508145543RH930271145.40    1AC055887, AC055887, AL109659
S/G/Y/R/B/O NT_004424AL359959508620893RH765121143.98    1AC055887, AC055887, AL359959
S/G/Y/R/B/O NT_004424AC055887508943961          
S/G/Y/R/B/O NT_004424AC055886509523771WI-4611    1174.302AL603840, AC055885, AC055886, AL157949, AL603840
S/G/Y/R/B/O NT_004424AL356968512206551WI-14342    2952.401AC007282, AC007282, AL356968
S/G/Y/R/B/O NT_004424AL391844513458603WI-11210    1167.601 AL389920, AL391844
S/G/Y/R/B/O NT_004424AL355809513933813GCT16E08    1162.201 AC023341, AL355809
S/G/Y/R/B/O NT_004424AC097062515117913RH657311143.87    1 AC023341, AC097062
S/G/Y/R/B/O NT_004424AC097062515527683RH493341145.81    1 AC097062
S/G/Y/R/B/O NT_004424AC097062515852083WI-15759    1169.501 AC097062
S/G/Y/R/B/O NT_004424AC097062515852083RH643461143.87    1 AC097062
S/G/Y/R/B/O NT_004424AL645507516480443          
S/G/Y/R/B/O NT_004424AC099788517487873          
S/G/Y/R/B/O NT_004424AC092264518954663          
S/G/Y/R/B/O NT_004424AL590432519689073          
S/G/Y/R/B/O NT_004424AL031294520792223WI-4234    1171.001 AC011130, AL031294
S/G/Y/R/B/O NT_004424AL356916521357093          
S/G/Y/R/B/O NT_004424AL445527522526203          
S/G/Y/R/B/O NT_004424AL356789522883113SGC31094    1171.001 AL356789
S/G/Y/R/B/O NT_004424AL356789522883113RH642881148.13    1 AL356789
S/G/Y/R/B/O NT_004424AL390023524737043RH642441148.13  1167.301 AL390023
S/G/Y/R/B/O NT_004424AC105766525101593WI-10824    1171.001 AC105766, AL121991
S/G/Y/R/B/O NT_004424AC105766525101593RH508641148.33    1 AC105766, AL121991
S/G/Y/R/B/O NT_004424AL591602525771513          
S/G/Y/R/B/O NT_004424AL645730527249323          
S/G/Y/R/B/O NT_004424AL139255528824293RH654831152.74    1 AC020781, AL139255
S/G/Y/R/B/O NT_004424AL139255528905483RH505081152.63  1173.901 AC020781, AL139255
S/G/Y/R/B/O NT_004424AL139255528906103RH169821152.53    1 AC020781, AL139255
S/G/Y/R/B/O NT_004424AL139255528922293RH693551152.63    1 AC020781, AL139255
S/G/Y/R/B/O NT_004424AL139255528947173RH677461152.63    1AC099784, AC020781, AC099784, AL139255
S/G/Y/R/B/O NT_004424AL139255528962423RH158731152.12    1AC099784, AC099784
S/G/Y/R/B/O NT_004424AC099784528963751          


  NT_004424 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004424AL356976531214951RH693751151.60    1 AL356976
S/G/Y/R/B/O NT_004424AC073923530857071          
S/G/Y/R/B/O NT_004424AL591167531304913          
S/G/Y/R/B/O NT_004424AL138849532041323RH504671151.60  1172.701 AL138849
S/G/Y/R/B/O NT_004424AL138849532046183RH254041151.81    1 AL138849
S/G/Y/R/B/O NT_004424AL138849532935413RH183881151.49    1AL513218, AL138849, AL513218
S/G/Y/R/B/O NT_004424AL138849533096753RH473201151.60    1AL513218, AL138849, AL513218
S/G/Y/R/B/O NT_004424AL138849533121873RH1045171152.2212577.00  1AL513218, AL138849, AL513218
S/G/Y/R/B/O NT_004424AL513218536686781RH704951151.60    1 AL138792, AL513218
S/G/Y/R/B/O NT_004424AL513218536687811RH675281151.60    1 AL138792, AL513218
S/G/Y/R/B/O NT_004424AL513218536880351RH159871151.60    1 AL138792, AL513218
S/G/Y/R/B/O NT_004424AL513218536880411RH499131151.60  1172.701 AL138792, AL513218
S/G/Y/R/B/O NT_004424AL513218536889751RH647851151.6012582.00  1 AL138792, AL513218
S/G/Y/R/B/O NT_004424AL513218536891271RH504741151.60  1172.701 AL138792, AL513218
S/G/Y/R/B/O NT_004424AL445685533513563RH644731151.81  1172.701 AL355676, AL359965, AL445685
S/G/Y/R/B/O NT_004424AL445685533514053RH104951151.08    1 AL355676, AL359965, AL445685
S/G/Y/R/B/O NT_004424AL445685533633513RH104961151.08    1 AL355676, AL445685
S/G/Y/R/B/O NT_004424AL606761534073133          
S/G/Y/R/B/O NT_004424AL139156534193783RH639281151.08  1172.701 AL139156
S/G/Y/R/B/O NT_004424AL139156534202963RH933141151.08    1  
S/G/Y/R/B/O NT_004424AL139156534912773RH679204489.79    3AC019131, AC026899, AL391500, AC019131, AC026899, AC026909, AL139156, AL391500, AP002028
S/G/Y/R/B/O NT_004424AC105754535696903RH483851151.60    1 AC026909, AC105754
S/G/Y/R/B/O NT_004424 - RH118961151.08    1AL096888, AL096888
S/G/Y/R/B/O NT_004424 - RH29935  12567.00  1AL050343, AL050343
S/G/Y/R/B/O NT_004424 - WI-7569    1174.301AC025008, AC027052, AL035411, AL365187, AC025008, AC027052, AL035411, AL365187, J04152
S/G/Y/R/B/O NT_004424 - RH254971151.60    0  
S/G/Y/R/B/O NT_004424 - RH33513  12567.00  1AL050343, AL050343, AL359372
S/G/Y/R/B/O NT_004424 - RH257601153.35    0AC099784, AC099784
S/G/Y/R/B/O NT_004424 - RH33691  12590.00  1AL359255, AL391001, AL359255, AL391001
S/G/Y/R/B/O NT_004424 - RH645001151.08    0 AL391537, AL606492
S/G/Y/R/B/O NT_004424 - RH38073  12567.00  1AL589663, AL359965, AL589663
S/G/Y/R/B/O NT_004424 - RH365751153.25    0  
S/G/Y/R/B/O NT_004424 - RH367301151.08    1AC012618, AC012618, AC062036
S/G/Y/R/B/O NT_004424 - RH643951152.02    2AC008784, AC025777, AC035146, AL356212, AC008784, AC025777, AC035146, AL356212
S/G/Y/R/B/O NT_004424 - RH506911151.03    1AC025008, AL035411, AC025008, AL035411
S/G/Y/R/B/O NT_004424 - RH646201152.63    0AC099784, AC099784
S/G/Y/R/B/O NT_004424 - RH662171152.74    0  
S/G/Y/R/B/O NT_004424 - RH933601152.63    0AC099562, AC099789, AC099562, AC099789
S/G/Y/R/B/O NT_004424 - RH993321152.53    0AC093564, AC022728, AC093564