Chromosome 2 - RH Maps - Single Contig

Chromosome 2 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033005	NT_022221	NT_022139	NT_022270	NT_022194	NT_022327	NT_005334	NT_033008
NT_033000	NT_005214	NT_033002	NT_022227	NT_015926	NT_005204	NT_030589	NT_005367
NT_015120	NT_026239	NT_005389	NT_005399	NT_005375	NT_032985	NT_032982	NT_032996
NT_033007	NT_033006	NT_032984	NT_032999	NT_022354	NT_033004	NT_022184	NT_005322
NT_022143	NT_015805	NT_033003	NT_032992	NT_029235	NT_032994	NT_022300	NT_026970
NT_032987	NT_022171	NT_032997	NT_005429	NT_005224	NT_029895	NT_022240	NT_031762
NT_032990	NT_019306	NT_026982	NT_030595	NT_022222	NT_029927	NT_005079	NT_022135
NT_032991	NT_022140	NT_029911	NT_028068	NT_030590	NT_005058	NT_029926	NT_005129
NT_022172	NT_005273	NT_005435	NT_005151	NT_031761	NT_022154	NT_005343	NT_005332
NT_025652	NT_032998	NT_005265	NT_005031	NT_022339	NT_030600	NT_022197	NT_005483
NT_005062	NT_022155	NT_032995	NT_005190	NT_030603	NT_005417	NT_028103	NT_033001
NT_005037	NT_005229	NT_005370	NT_005034	NT_005078	NT_005486	NT_031748	NT_005337
NT_005403	NT_032986	NT_022115	NT_005414	NT_022315	NT_005120	NT_022173	NT_022388
NT_005416	NT_005472	NT_022250	NT_032981	NT_026250

NT_005229

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005229	AC018717	202928770	3	WI-5648					2	947.90	2	AC110787,	AC018717, AC110787
S/G/Y/R/B/O	NT_005229	AC016746	203118895	3	WI-5610					2	949.70	1		AC016746
S/G/Y/R/B/O	NT_005229	AC016746	203127868	3	RH91707	2	624.57					2	AC097313,	AC016746, AC097313
S/G/Y/R/B/O	NT_005229	AC016746	203129855	3	RH80503	2	619.81					1		AC016746
S/G/Y/R/B/O	NT_005229	AC017096	203319308	3	RH12785	2	624.57					1		AC017096
S/G/Y/R/B/O	NT_005229	AC017096	203319496	3	RH26072	2	624.57					1		AC017096
S/G/Y/R/B/O	NT_005229	AC017096	203319511	3	RH56858	2	620.82			2	949.70	1		AC017096
S/G/Y/R/B/O	NT_005229	AC079609	203407186	3
S/G/Y/R/B/O	NT_005229	AC093590	203430955	3
S/G/Y/R/B/O	NT_005229	AC018584	203555920	1
S/G/Y/R/B/O	NT_005229	AC073043	203626009	3	RH56278	2	620.82			2	949.70	1		AC073043
S/G/Y/R/B/O	NT_005229	AC073043	203626012	3	RH16249	2	620.82					1		AC073043
S/G/Y/R/B/O	NT_005229	AC108032	203732076	1
S/G/Y/R/B/O	NT_005229	AC097717	203785352	3	RH69327	2	620.32					1	AC108032,	AC097717, AC108032
S/G/Y/R/B/O	NT_005229	AC097717	203786092	3	RH56412	2	620.32	2	8853.00	2	949.70	1	AC108032,	AC097717, AC108032
S/G/Y/R/B/O	NT_005229	AC097717	203786487	3	RH45770	2	622.75					1	AC108032,	AC097717, AC108032
S/G/Y/R/B/O	NT_005229	AC097717	203787413	3	RH7886			2	8835.00			1	AC108032,	AC097717, AC108032
S/G/Y/R/B/O	NT_005229	AC097717	203797243	3	RH69789	2	620.82					1	AC108032,	AC097717, AC108032
S/G/Y/R/B/O	NT_005229	AC004464	203922773	3	CHLC.GATA28B07					2	948.00	1		AC004464
S/G/Y/R/B/O	NT_005229	AC105348	203965720	3
S/G/Y/R/B/O	NT_005229	AC074213	203995911	3
S/G/Y/R/B/O	NT_005229	AC105381	204227968	3	RH37827			2	8831.00			1		AC105381
S/G/Y/R/B/O	NT_005229	AC012459	204254983	3	RH69552	2	620.32					1		AC012459
S/G/Y/R/B/O	NT_005229	AC012459	204287769	3	RH42812			2	8831.00			1		AC012459
S/G/Y/R/B/O	NT_005229	AC012459	204336763	3	RH18299	2	620.82					1		AC012459
S/G/Y/R/B/O	NT_005229	AC012459	204347455	3	RH69301	2	620.32					1		AC012459
S/G/Y/R/B/O	NT_005229	AC080164	204427615	3
S/G/Y/R/B/O	NT_005229	AC007163	204529727	3	RH11649	2	624.57					1		AC007163, AC091232
S/G/Y/R/B/O	NT_005229	AC007163	204662066	3	RH56374	2	625.18			2	949.70	1		AC007163
S/G/Y/R/B/O	NT_005229	AC007163	204662066	3	RH34858			2	8850.00			1		AC007163
S/G/Y/R/B/O	NT_005229	AC007163	204680670	3	RH58042	3	422.57			3	528.20	2	AC068159, AC108687, AC108713,	AC007163, AC013742, AC068159, AC093681, AC108687, AC108713
S/G/Y/R/B/O	NT_005229	AC005037	204685610	3	RH103933	2	624.77					1		AC005037, AC093681
S/G/Y/R/B/O	NT_005229	AC005037	204711622	3	RH80114	2	622.75					1		AC005037, AC037455, AC093681
S/G/Y/R/B/O	NT_005229	AC005037	204729577	3	RH93729	2	624.57					1		AC005037, AC093681
S/G/Y/R/B/O	NT_005229	AC005037	204762200	3	RH12100	2	624.77					1		AC005037, AC037455
S/G/Y/R/B/O	NT_005229	AC005037	204769304	3	RH18054	2	625.18					1		AC005037, AC037455
S/G/Y/R/B/O	NT_005229	AC005037	204791744	3	RH65975	2	624.57					1		AC005037, AC037455
S/G/Y/R/B/O	NT_005229	AC005037	204816369	3	RH69617	2	624.77					1		AC005037, AC037455
S/G/Y/R/B/O	NT_005229	AC005037	204816369	3	RH38263			2	8841.00			1		AC005037, AC037455
S/G/Y/R/B/O	NT_005229	AC005037	204835543	3	RH36550	2	625.36					1		AC005037, AC037455
S/G/Y/R/B/O	NT_005229	AC005037	204837548	3	RH56981	2	624.57			2	949.70	1		AC005037, AC037455
S/G/Y/R/B/O	NT_005229	AC005037	204837548	3	RH32382			2	8731.00			1		AC005037, AC037455
S/G/Y/R/B/O	NT_005229	AC005037	204838502	3	RH102160	2	624.57					1		AC005037, AC037455
S/G/Y/R/B/O	NT_005229	AC007272	204906193	3	RH56221	2	624.36					1		AC007272
S/G/Y/R/B/O	NT_005229	AC007272	204906193	3	WI-16424					2	948.00	1		AC007272
S/G/Y/R/B/O	NT_005229	AC007283	204974705	3	RH26521	2	626.65					1		AB038965, AC007283
S/G/Y/R/B/O	NT_005229	AC007283	204977280	3	RH102289	2	624.67					1		AC007283
S/G/Y/R/B/O	NT_005229	AC007283	204999878	3	RH98318	2	626.91					1		AC007283
S/G/Y/R/B/O	NT_005229	AC007283	204999926	3	RH26921	2	628.06					1		AC007283
S/G/Y/R/B/O	NT_005229	AC007283	204999933	3	RH57145	2	626.65			2	950.20	1		AC007283

NT_005229 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005229	AC007283	205009809	3	RH68847	2	626.65					1		AC007283
S/G/Y/R/B/O	NT_005229	AC007283	205019213	3	RH45502	2	626.65					1		AB038972, AC007283
S/G/Y/R/B/O	NT_005229	AC007283	205032481	3	RH68802	2	626.70					1		AC007283
S/G/Y/R/B/O	NT_005229	AC007283	205077219	3	RH70685	2	626.70					1		AB038978, AC007283, AC074016
S/G/Y/R/B/O	NT_005229	AC007283	205078212	3	RH68751	2	626.70					1		AB038978, AC007283, AC074016
S/G/Y/R/B/O	NT_005229	AC007283	205089807	3	RH70497	2	626.65					1		AB038979, AC007283, AC074016
S/G/Y/R/B/O	NT_005229	AC007256	205102791	3	RH36454	2	626.65					1		AC007256, AC074016
S/G/Y/R/B/O	NT_005229	AC007256	205102839	3	RH27070	2	626.65					1		AC007256, AC074016
S/G/Y/R/B/O	NT_005229	AC007256	205124981	3	RH70951	2	626.65					1		AC007256, AC074016
S/G/Y/R/B/O	NT_005229	AC007256	205134528	3	RH15884	2	626.65					1		AB038984, AC007256, AC074016
S/G/Y/R/B/O	NT_005229	AC007256	205145846	3	RH91207	2	626.65					1		AC007256, AC074016
S/G/Y/R/B/O	NT_005229	AC007256	205146788	3	RH104035	2	624.36					1		AB038985, AC007256, AC074016
S/G/Y/R/B/O	NT_005229	AC007256	205235701	3	RH57050	2	626.65			2	951.40	1	AC080069,	AB038964, AC007256, AC080069
S/G/Y/R/B/O	NT_005229	AC007256	205235712	3	RH16926	2	626.65					1	AC080069,	AB038964, AC007256, AC080069
S/G/Y/R/B/O	NT_005229	AC007256	205238320	3	RH56711	2	626.08			2	949.70	1	AC080069,	AB038964, AC007256, AC080069
S/G/Y/R/B/O	NT_005229	AC007256	205238441	3	RH10034	2	618.65					1	AC080069,	AB038964, AC007256, AC080069
S/G/Y/R/B/O	NT_005229	AC007256	205242517	3	RH38269			2	8850.00			1	AC080069,	AC007256, AC080069
S/G/Y/R/B/O	NT_005229	AC007256	205242700	3	RH91268	2	626.75					1		AC007256
S/G/Y/R/B/O	NT_005229	AC080069	205282053	1	RH98914	2	577.44					2	AC096649, AL357128,	AC011574, AC096649, AL357128
S/G/Y/R/B/O	NT_005229	AC007282	205355315	3	RH17492	2	626.65					1	AC080069,	AC007282, AC080069
S/G/Y/R/B/O	NT_005229	AC007282	205357223	3	WI-10756					2	951.40	1	AC080069,	AC007282, AC080069
S/G/Y/R/B/O	NT_005229	AC007282	205438264	3	RH46527	2	625.87					1		AC007282, AC067825
S/G/Y/R/B/O	NT_005229	AC007282	205479030	3	RH15616	2	624.67					1		AC007282, AC018615, AC067825
S/G/Y/R/B/O	NT_005229	AC007282	205482349	3	RH47568	2	624.26					1		AC007282, AC018615, AC067825
S/G/Y/R/B/O	NT_005229	AC007282	205482362	3	RH68361	2	626.70					1		AC007282, AC018615, AC067825
S/G/Y/R/B/O	NT_005229	AC007279	205516489	3	RH79562	2	625.91					1		AC007279, AC018615, AC067825
S/G/Y/R/B/O	NT_005229	AC007279	205559204	3	RH12092	2	626.65					1		AC007279, AC018615, AC067825
S/G/Y/R/B/O	NT_005229	AC007242	205640411	3	RH92914	2	626.65					1		AC007242
S/G/Y/R/B/O	NT_005229	AC007358	205753673	3	RH99261	2	624.47					1		AC007358
S/G/Y/R/B/O	NT_005229	AC007358	205795353	3	RH92505	2	625.87					1		AC007358
S/G/Y/R/B/O	NT_005229	AC069148	205957202	3	RH30036			2	8841.00			1		AC069148
S/G/Y/R/B/O	NT_005229	AC079354	205979441	3	WI-22275					2	952.90	1		AC079354
S/G/Y/R/B/O	NT_005229	AC079354	205979441	3	RH56799	2	628.44					1		AC079354
S/G/Y/R/B/O	NT_005229	AC079354	206038340	3	RH17359	2	628.27					2	AC010132,	AC010101, AC010132, AC079354
S/G/Y/R/B/O	NT_005229	AC079354	206059723	3	RH80756	12	218.92					1		AC079354
S/G/Y/R/B/O	NT_005229	AC079354	206064763	3	RH26310	2	628.34					1		AC079354
S/G/Y/R/B/O	NT_005229	AC064836	206121761	3
S/G/Y/R/B/O	NT_005229		-		RH25896	2	624.06					0
S/G/Y/R/B/O	NT_005229		-		RH14195			2	8845.00			1	AC013270,	AC013270
S/G/Y/R/B/O	NT_005229		-		WI-14342					2	952.40	1	AC007282, AL356968,	AC007282, AL356968
S/G/Y/R/B/O	NT_005229		-		RH27163	2	625.46					1	AC017035,	AC017035
S/G/Y/R/B/O	NT_005229		-		RH36594	2	626.65					0
S/G/Y/R/B/O	NT_005229		-		RH36623	2	625.56					1	AC020550,	AC020550
S/G/Y/R/B/O	NT_005229		-		RH65648	2	624.57					1	AC016938, AC069523,	AC016938, AC069523
S/G/Y/R/B/O	NT_005229		-		RH80119	2	626.60					1	AC005235,	AC005235
S/G/Y/R/B/O	NT_005229		-		RH98213	2	625.87					0