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  Chromosome 3 - RH Maps - Single Contig
 

Chromosome 3 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_005927 NT_029265 NT_028123 NT_006044 NT_022517 NT_005507 NT_022516 NT_005564
NT_005762 NT_005646 NT_028139 NT_033044 NT_005502 NT_022539 NT_022464 NT_005580
NT_033049 NT_005498 NT_006036 NT_005825 NT_029949 NT_005991 NT_005585 NT_022567
NT_028129 NT_005990 NT_030623 NT_022439 NT_006014 NT_033032 NT_005986 NT_033015
NT_033038 NT_022552 NT_005787 NT_033040 NT_022481 NT_005607 NT_033026 NT_005999
NT_005531 NT_022473 NT_022423 NT_005510 NT_022510 NT_022665 NT_028127 NT_022400
NT_005530 NT_029258 NT_022442 NT_005769 NT_005526 NT_022540 NT_022717 NT_005644
NT_022446 NT_005583 NT_033034 NT_005882 NT_033036 NT_022419 NT_006031 NT_022551
NT_022459 NT_033029 NT_022713 NT_022460 NT_033011 NT_022554 NT_022720 NT_005684
NT_005663 NT_033018 NT_022420 NT_033043 NT_022642 NT_005791 NT_022452 NT_022435
NT_033028 NT_022497 NT_022625 NT_005568 NT_022401 NT_033031 NT_026983 NT_022475
NT_033037 NT_022451 NT_005509 NT_005527 NT_033050 NT_030634 NT_033041 NT_005863
NT_022454 NT_022607 NT_022453 NT_025670 NT_030622 NT_033045 NT_022728 NT_031768
NT_019350 NT_022434 NT_029256 NT_022405 NT_022569 NT_006042 NT_022484 NT_005795
NT_015150 NT_022445 NT_030625 NT_005532 NT_029269 NT_022455 NT_029931 NT_033022
NT_029257 NT_005513 NT_005994 NT_030635 NT_022411 NT_005824 NT_033021 NT_005543
NT_005588 NT_006029 NT_022513 NT_005523 NT_033014 NT_006025 NT_022404 NT_005823
NT_033019 NT_022393 NT_025663 NT_005567 NT_030630 NT_005969 NT_033051 NT_025664
NT_005655 NT_022503 NT_022632 NT_033024 NT_022416 NT_022432 NT_033020 NT_033035
NT_033042 NT_005832 NT_022502 NT_005772 NT_019358 NT_005591 NT_005775 NT_022616
NT_005540 NT_029939 NT_005616 NT_005539 NT_022555 NT_005849 NT_005657 NT_005678
NT_005846 NT_005612 NT_033030 NT_022463 NT_022594 NT_022449 NT_022421 NT_005744
NT_022565 NT_022518 NT_005638 NT_022397 NT_022700 NT_022422 NT_025667 NT_033052
NT_022472 NT_033033 NT_022526 NT_022674 NT_022458 NT_022509 NT_005635 NT_033053
NT_005950 NT_022396 NT_005952 NT_022406 NT_022676 NT_029253 NT_030638 NT_005910
NT_022549 NT_033009 NT_005911 NT_005962 NT_031766 NT_005883 NT_005501 NT_005571
NT_033017 NT_033013 NT_029928 NT_033010 NT_005834 NT_005535 NT_033012 NT_033016
NT_022508


  NT_025667
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_025667AC0732881802081021RH686303628.46    1 AC073288
S/G/Y/R/B/O NT_025667AC0732881802099251RH587613628.4638297.003766.201 AC073288
S/G/Y/R/B/O NT_025667AC0732881802100491RH416943628.46    1 AC073288
S/G/Y/R/B/O NT_025667AC0732881802282991RH1021433630.04    1 AC073288
S/G/Y/R/B/O NT_025667AC0732881802368791RH416953630.14    1 AC073288
S/G/Y/R/B/O NT_025667AC0732881802403451RH665553631.35    1 AC073288
S/G/Y/R/B/O NT_025667AC0688531748615411          
S/G/Y/R/B/O NT_025667AC0617081749000063RH788663634.19    1 AC023238, AC061708
S/G/Y/R/B/O NT_025667AC0617081749012153RH481433633.39    1AC068853, AC023238, AC061708, AC068853
S/G/Y/R/B/O NT_025667AC0617081749116353RH934023632.46    1AC068853, AC023238, AC061708, AC068853
S/G/Y/R/B/O NT_025667AC0617081750062983RH128263635.78    1AC026315, AC068853, AC023238, AC026315, AC061708, AC068853
S/G/Y/R/B/O NT_025667AC0617081750066423RH585053635.57  3774.501AC026315, AC068853, AC023238, AC026315, AC061708, AC068853
S/G/Y/R/B/O NT_025667AC0617081750072423RH165243635.57    1AC026315, AC068853, AC023238, AC026315, AC061708, AC068853
S/G/Y/R/B/O NT_025667AC0617081750074623RH689673635.57    1AC026315, AC068853, AC023238, AC026315, AC061708, AC068853
S/G/Y/R/B/O NT_025667AC0617081750083963RH1731  38269.00  1AC026315, AC068853, AC023238, AC026315, AC061708, AC068853
S/G/Y/R/B/O NT_025667AC0617081750085813RH689993635.57    1AC026315, AC068853, AC013515, AC023238, AC026315, AC061708, AC068853
S/G/Y/R/B/O NT_025667AC0617081750087973RH697313635.78    1AC026315, AC068853, AC013515, AC023238, AC026315, AC061708, AC068853
S/G/Y/R/B/O NT_025667AC0617081750181503RH415033635.57    1AC026315, AC023238, AC026315, AC061708
S/G/Y/R/B/O NT_025667AC0617081750207263RH702133635.57    1AC026315, AC068853, AC023238, AC026315, AC061708, AC068853
S/G/Y/R/B/O NT_025667AC0617081750291393RH580953634.93  3773.701AC026315, AC068853, AC023238, AC026315, AC061708, AC068853
S/G/Y/R/B/O NT_025667AC0929181750326353          
S/G/Y/R/B/O NT_025667AC0263151750649071RH461533635.57    1 AC026315
S/G/Y/R/B/O NT_025667AC0263151750693081RH582973635.78  3775.701 AC026315
S/G/Y/R/B/O NT_025667AC0263151750722321RH589043635.78  3776.001 AC026315
S/G/Y/R/B/O NT_025667AC0263151750736951RH583123635.78  3775.701 AC026315
S/G/Y/R/B/O NT_025667AC0263151750977811RH121423635.57    1 AC026315
S/G/Y/R/B/O NT_025667AC0263151751064481RH585613635.78  3776.001AC026667, AC026315, AC026667, AC098564
S/G/Y/R/B/O NT_025667AC0263151751064481RH415093635.57    1AC026667, AC026315, AC026667, AC098564
S/G/Y/R/B/O NT_025667AC0266671751878861RH672653635.57    1 AC026667, AC098564
S/G/Y/R/B/O NT_025667AC0266671751948681RH494923635.7838264.00  1 AC026667, AC098564
S/G/Y/R/B/O NT_025667AC0266671752423771RH586403635.78  3776.401 AC026667, AC098564
S/G/Y/R/B/O NT_025667AC0263721800205131RH456343628.46    1AC023891, AC044856, AC023891, AC026372, AC044856
S/G/Y/R/B/O NT_025667AC0263721801369211RH678953628.46    1AC044856, AC073288, AC026372, AC044856, AC073288
S/G/Y/R/B/O NT_025667AC0787931752987683RH807293633.81    1AC026667, AC025027, AC026667, AC078793, AC098564
S/G/Y/R/B/O NT_025667AC0787931753286813RH581273635.57  3774.501 AC025027, AC078793
S/G/Y/R/B/O NT_025667AC0787931753286953RH123303635.57    1 AC025027, AC078793
S/G/Y/R/B/O NT_025667AC0787931753376773RH588733635.78  3775.701 AC025027, AC078793
S/G/Y/R/B/O NT_025667AC0787931753540953RH748213635.78    1 AC078793
S/G/Y/R/B/O NT_025667AC0787931753608473RH478823635.57    1 AC025027, AC078793
S/G/Y/R/B/O NT_025667AC0929191754027173          
S/G/Y/R/B/O NT_025667AC0081341756162763RH451533643.31    1 AC008134, AC019265, AC026321, AC092971
S/G/Y/R/B/O NT_025667AC0081341756181993RH582073641.11  3778.601 AC008134, AC019265, AC026321, AC092971
S/G/Y/R/B/O NT_025667AC0081341756182103RH255953641.01    1 AC008134, AC019265, AC026321, AC092971
S/G/Y/R/B/O NT_025667AC0081341756182413RH587063641.1138258.003780.801 AC008134, AC019265, AC092971
S/G/Y/R/B/O NT_025667AC0081341756183363RH778643641.11    1 AC008134, AC019265, AC026321, AC092971
S/G/Y/R/B/O NT_025667AC0081341756556363RH916253643.31    1 AC008134, AC019265, AC092971
S/G/Y/R/B/O NT_025667AC0081341756701113RH675663642.64    1 AC008134, AC019265, AC092971
S/G/Y/R/B/O NT_025667AC0789531757628713RH480973643.31    1 AC078953
S/G/Y/R/B/O NT_025667AC0789531758028163RH688003641.11    1 AC078953
S/G/Y/R/B/O NT_025667AC0789531758037493RH481113643.31    1 AC078953


  NT_025667 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_025667AC0557141759003131RH481903643.31    1 AC016783, AC026322, AC055714, AC073354, AC108712
S/G/Y/R/B/O NT_025667AC0557141759687601WI-3008    3778.701 AC016783, AC026312, AC026322, AC055714, AC073354, AC108712
S/G/Y/R/B/O NT_025667AC0557141759932841CHLC.GATA28E03    3780.901 AC016783, AC026312, AC026322, AC055714, AC073354, AC108712
S/G/Y/R/B/O NT_025667AC0692591760483093CHLC.GATA92B06    3784.501 AC026312
S/G/Y/R/B/O NT_025667AC0692591760568883RH123273643.31    1AC020649, AC020649, AC026312, AC069259
S/G/Y/R/B/O NT_025667AC0692591760697833RH452373643.31    1AC020649, AC020649, AC026312, AC069259
S/G/Y/R/B/O NT_025667AC0692591760698073RH675423641.11    1AC020649, AC020649, AC026312, AC069259
S/G/Y/R/B/O NT_025667AC0692591761072293RH154993641.11    1 AC026312
S/G/Y/R/B/O NT_025667AC0692591761112493RH675973641.11    1AC020649, AC020649, AC026312, AC069259
S/G/Y/R/B/O NT_025667AC1086681761206581RH118623643.26    1AC020649, AC069259, AC020649, AC069259, AC108668, AC108668
S/G/Y/R/B/O NT_025667AC1086681762023111RH585883643.26  3783.601 AC108668
S/G/Y/R/B/O NT_025667AC1086681762024191RH1033343642.64    1 AC108668
S/G/Y/R/B/O NT_025667AC1086681762489161RH363593641.21    1AC092964, AC092964, AC108668
S/G/Y/R/B/O NT_025667AC0929641763258801RH581773641.11  3779.001 AC092964
S/G/Y/R/B/O NT_025667AC0206491763405541          
S/G/Y/R/B/O NT_025667AC0255451763466491          
S/G/Y/R/B/O NT_025667AC0695231763622073RH587153643.16  3782.801AC025545, AC092964, AC025545, AC069523, AC092964
S/G/Y/R/B/O NT_025667AC0695231763934793WI-5326    3788.201AC025545, AC092964, AC025545, AC069523, AC092964
S/G/Y/R/B/O NT_025667AC0695231763975163RH477153645.51    1AC025545, AC092964, AC025545, AC069523, AC092964
S/G/Y/R/B/O NT_025667AC0695231764200613RH163823645.71    1AC092964, AC069523, AC092964
S/G/Y/R/B/O NT_025667AC0695231764208333RH579883645.61  3788.301AC025545, AC092964, AC025545, AC069523, AC092964
S/G/Y/R/B/O NT_025667AC0695231764208483RH266223645.61    1AC025545, AC092964, AC025545, AC069523, AC092964
S/G/Y/R/B/O NT_025667AC0695231764220943RH171193645.71    1AC025545, AC092964, AC025545, AC069523, AC092964
S/G/Y/R/B/O NT_025667AC0695231764484513RH656482624.57    1AC016938, AC016938, AC069523
S/G/Y/R/B/O NT_025667AC0695231764750023RH154613645.61    1AC016938, AC016938, AC069523
S/G/Y/R/B/O NT_025667AC0169381765025091          
S/G/Y/R/B/O NT_025667AC0070511765274643RH665703643.31    1 AC007051
S/G/Y/R/B/O NT_025667AC0070511765280213RH358903645.51    1AC016938, AC007051, AC016938
S/G/Y/R/B/O NT_025667AC0070511765745193WI-3218    3785.901AC007919, AC016938, AC007051, AC007919, AC016938, AC078792
S/G/Y/R/B/O NT_025667AC0070511766523143RH588923645.71  3777.301AC007919, AC069237, AC007051, AC007919, AC069237
S/G/Y/R/B/O NT_025667AC0070511766523463RH581813645.71  3784.801AC007919, AC069237, AC007051, AC007919, AC069237
S/G/Y/R/B/O NT_025667AC0070511766542363RH701783645.71    1AC007919, AC069237, AC007051, AC007919, AC069237
S/G/Y/R/B/O NT_025667AC0079191766769933          
S/G/Y/R/B/O NT_025667AC1086671768046311RH915213645.71    1 AC108667
S/G/Y/R/B/O NT_025667AC1086671768131941RH30058  38210.00  1 AC108667
S/G/Y/R/B/O NT_025667AC1086671768376751RH1023073645.61    1 AC108667
S/G/Y/R/B/O NT_025667AC0692371767597711          
S/G/Y/R/B/O NT_025667AC0929481768542703          
S/G/Y/R/B/O NT_025667AC0639331769988483          
S/G/Y/R/B/O NT_025667AC0687581771652283          
S/G/Y/R/B/O NT_025667AC0687591772066303          
S/G/Y/R/B/O NT_025667AC0184561774062823RH705  38192.00  1 AC018456
S/G/Y/R/B/O NT_025667AC0184561774062823RH134723651.58    1 AC018456
S/G/Y/R/B/O NT_025667AC0120821775114913RH477943654.94    1 AC012082, AC069531
S/G/Y/R/B/O NT_025667AC0929351775480913          
S/G/Y/R/B/O NT_025667AC0929671775657661          
S/G/Y/R/B/O NT_025667AC0929231777808921D3S1565    3795.701AC024178, AC024178, AC092923
S/G/Y/R/B/O NT_025667AC0929231777808921RH54043657.35    1AC024178, AC024178, AC092923
S/G/Y/R/B/O NT_025667AC0929231777808921RH451  38221.00  1AC024178, AC024178, AC092923
S/G/Y/R/B/O NT_025667AC0929231786466401RH482753648.54    2AC024178, AC110871, AC024178, AC092923, AC110871


  NT_025667 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_025667AC0241781778379861          
S/G/Y/R/B/O NT_025667AC0787951778486541RH786963628.46    1 AC078795
S/G/Y/R/B/O NT_025667AC0787951796792301RH167283628.46    1 AC078795
S/G/Y/R/B/O NT_025667AC0787951796797321RH489083628.46    1 AC078795, AF349562
S/G/Y/R/B/O NT_025667AC0787951796886001RH414763628.46    1 AC078795
S/G/Y/R/B/O NT_025667AC0787951796886171RH473553628.46    1 AC078795
S/G/Y/R/B/O NT_025667AC0787951796891191RH918743628.46    1 AC078795
S/G/Y/R/B/O NT_025667AC0787951796965471RH1037303628.46    1 AC078795
S/G/Y/R/B/O NT_025667AC0692431779409133RH937823612.51    1 AC069243
S/G/Y/R/B/O NT_025667AC0692431780111973WI-4113    3751.501AC016863, AC016863, AC069243
S/G/Y/R/B/O NT_025667AC0168631780894181          
S/G/Y/R/B/O NT_025667AC0277051781032311          
S/G/Y/R/B/O NT_025667AC0098621781955001          
S/G/Y/R/B/O NT_025667AC0617101783097283WI-5163    3761.401AC009862, AC009862
S/G/Y/R/B/O NT_025667AC0617101783259173RH1030723623.42    1AC009862, AC009862, AC011321, AC061710
S/G/Y/R/B/O NT_025667AC0617101783455193RH137003623.4238449.00  1 AC011321, AC061710
S/G/Y/R/B/O NT_025667AC0183561784195173WI-5475    3761.401 AC011321, AC018356, AC040973
S/G/Y/R/B/O NT_025667AC0183561784269573RH585973623.42  3761.501 AC011321, AC018356, AC040973
S/G/Y/R/B/O NT_025667AC1129111785038203          
S/G/Y/R/B/O NT_025667AC0694141786912401RH266183623.42    2AC063935, AC055759, AC058333, AC063935, AC069414
S/G/Y/R/B/O NT_025667AC0694141787014211RH109323625.10    2AC063935, AC055759, AC058333, AC063935, AC069414
S/G/Y/R/B/O NT_025667AC0929541787313981RH806743625.26    1AC063935, AC069414, AC026080, AC058333, AC063935, AC069414, AC092954
S/G/Y/R/B/O NT_025667AC0929541787676401RH672193625.10    1 AC026080, AC055759, AC058333, AC092954
S/G/Y/R/B/O NT_025667AC0929541788123951WI-4441    3763.101AC046139, AC026058, AC026080, AC046139, AC092932, AC092954
S/G/Y/R/B/O NT_025667AC0929541788299261RH584953625.10  3763.101AC046139, AC026058, AC026080, AC046139, AC092932, AC092954
S/G/Y/R/B/O NT_025667AC0461391788886821          
S/G/Y/R/B/O NT_025667AC0074801788993211          
S/G/Y/R/B/O NT_025667AC0223321789259671          
S/G/Y/R/B/O NT_025667AC0789851789856313RH586753626.78  3764.401AC022332, AC022332, AC078985
S/G/Y/R/B/O NT_025667AC0789851789864003RH765893628.46    1AC007480, AC022332, AC007480, AC022332, AC078985
S/G/Y/R/B/O NT_025667AC0789851789897983RH714033626.78    1AC007480, AC022332, AC007480, AC022332, AC078985
S/G/Y/R/B/O NT_025667AC0789851790738033RH133153626.7838427.00  1 AC078985
S/G/Y/R/B/O NT_025667AC0240991791444793RH480133626.78    1 AC024099, AC067720
S/G/Y/R/B/O NT_025667AC0692201791539403          
S/G/Y/R/B/O NT_025667AC0000541792221193          
S/G/Y/R/B/O NT_025667AL3914141792862303          
S/G/Y/R/B/O NT_025667AC0740331793073823          
S/G/Y/R/B/O NT_025667AC1143051793851001RH8624  32819.00  2AC074033, AL031847, AC074033, AC114305, AL031847, AL589792
S/G/Y/R/B/O NT_025667AC1143051793851071RH1348  32819.00  2AC074033, AL031847, AC074033, AC114305, AL031847, AL589792
S/G/Y/R/B/O NT_025667AC1143051793992881RH365093628.46    1AC074033, AC074033, AC114305
S/G/Y/R/B/O NT_025667AC1143051793992991RH671643628.46    1AC074033, AC074033, AC114305
S/G/Y/R/B/O NT_025667AC0078491795898891WI-3520    3766.201AC078802, AC007849, AC078802
S/G/Y/R/B/O NT_025667AC0788021795491531          
S/G/Y/R/B/O NT_025667AC0080401797730313RH755083628.46    1AL078638, AL078638, AL670274
S/G/Y/R/B/O NT_025667AC0080401797806213RH580153625.26  3764.401 AC008040
S/G/Y/R/B/O NT_025667AC0080401797807643RH359673628.46    1 AC008040
S/G/Y/R/B/O NT_025667AC0080401797947823RH166433628.46    1 AC008040
S/G/Y/R/B/O NT_025667AC0080401798200023RH760813630.04    1 AC008040
S/G/Y/R/B/O NT_025667AC0080401798202703RH266673626.68    1 AC008040
S/G/Y/R/B/O NT_025667AC0080401798204573RH463623628.46    1 AC008040


  NT_025667 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_025667AC0080401798215113RH693133628.46    1 AC008040
S/G/Y/R/B/O NT_025667AC0080401798224833RH586263625.26  3764.401 AC008040
S/G/Y/R/B/O NT_025667AC0080401798225793RH106063628.46    1 AC008040
S/G/Y/R/B/O NT_025667AC0238911799112971RH919653628.46    1AC008040, AC008040, AC023891
S/G/Y/R/B/O NT_025667AC0238911799114141RH37936  38379.00  1AC008040, AC008040, AC023891
S/G/Y/R/B/O NT_025667AC0238911799114601RH584033630.24  3767.701AC008040, AC008040, AC023891
S/G/Y/R/B/O NT_025667AC0238911799139781RH588123628.46  3766.201AC008040, AC008040, AC023891
S/G/Y/R/B/O NT_025667AC0238911799140771RH286893628.46    1AC008040, AC008040, AC023891
S/G/Y/R/B/O NT_025667AC0238911799564001RH416183628.46    1 AC023891
S/G/Y/R/B/O NT_025667AC0238911799584191RH364793628.46    1 AC023891
S/G/Y/R/B/O NT_025667AC0238911799618821RH482683628.46    1  
S/G/Y/R/B/O NT_025667AC0448561800339101          
S/G/Y/R/B/O NT_025667AC0080411802686613RH585273630.14  3767.701 AC008041
S/G/Y/R/B/O NT_025667AC0080411802695333RH934143630.14    1 AC008041
S/G/Y/R/B/O NT_025667AC0080411802946773RH982043632.05    1 AC008041
S/G/Y/R/B/O NT_025667AC0080411803059343RH422953630.14  3767.701 AC008041
S/G/Y/R/B/O NT_025667AC0080411803059343RH33285  38329.00  1 AC008041
S/G/Y/R/B/O NT_025667 - RH470543625.15    0  
S/G/Y/R/B/O NT_025667 - RH13767  38130.00  1AC023235, AC023235
S/G/Y/R/B/O NT_025667 - AFMB317ZB9    3766.200AC078795, AC078795
S/G/Y/R/B/O NT_025667 - RH689983635.57    0  
S/G/Y/R/B/O NT_025667 - RH14109  38101.00  1AC067992, AC076966, AC067992, AC076966
S/G/Y/R/B/O NT_025667 - WI-3847    3769.301AC026316, AC026094, AC026316
S/G/Y/R/B/O NT_025667 - RH30059  38285.00  1AC092051, AC092051
S/G/Y/R/B/O NT_025667 - CHLC.GATA90E11    3782.800  
S/G/Y/R/B/O NT_025667 - RH32420  38261.00  1AC069201, AC092939, AC069201, AC073147, AC074352, AC092928, AC092939
S/G/Y/R/B/O NT_025667 - RH38259  38314.00  1AC007687, AC015620, AC007653, AC007687, AC015620, AC048335
S/G/Y/R/B/O NT_025667 - RH74583  38216.00  1 AC073285
S/G/Y/R/B/O NT_025667 - RH8885  38130.00  1AC023235, AC023235