Chromosome 3 - RH Maps - Single Contig

Chromosome 3 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_005927	NT_029265	NT_028123	NT_006044	NT_022517	NT_005507	NT_022516	NT_005564
NT_005762	NT_005646	NT_028139	NT_033044	NT_005502	NT_022539	NT_022464	NT_005580
NT_033049	NT_005498	NT_006036	NT_005825	NT_029949	NT_005991	NT_005585	NT_022567
NT_028129	NT_005990	NT_030623	NT_022439	NT_006014	NT_033032	NT_005986	NT_033015
NT_033038	NT_022552	NT_005787	NT_033040	NT_022481	NT_005607	NT_033026	NT_005999
NT_005531	NT_022473	NT_022423	NT_005510	NT_022510	NT_022665	NT_028127	NT_022400
NT_005530	NT_029258	NT_022442	NT_005769	NT_005526	NT_022540	NT_022717	NT_005644
NT_022446	NT_005583	NT_033034	NT_005882	NT_033036	NT_022419	NT_006031	NT_022551
NT_022459	NT_033029	NT_022713	NT_022460	NT_033011	NT_022554	NT_022720	NT_005684
NT_005663	NT_033018	NT_022420	NT_033043	NT_022642	NT_005791	NT_022452	NT_022435
NT_033028	NT_022497	NT_022625	NT_005568	NT_022401	NT_033031	NT_026983	NT_022475
NT_033037	NT_022451	NT_005509	NT_005527	NT_033050	NT_030634	NT_033041	NT_005863
NT_022454	NT_022607	NT_022453	NT_025670	NT_030622	NT_033045	NT_022728	NT_031768
NT_019350	NT_022434	NT_029256	NT_022405	NT_022569	NT_006042	NT_022484	NT_005795
NT_015150	NT_022445	NT_030625	NT_005532	NT_029269	NT_022455	NT_029931	NT_033022
NT_029257	NT_005513	NT_005994	NT_030635	NT_022411	NT_005824	NT_033021	NT_005543
NT_005588	NT_006029	NT_022513	NT_005523	NT_033014	NT_006025	NT_022404	NT_005823
NT_033019	NT_022393	NT_025663	NT_005567	NT_030630	NT_005969	NT_033051	NT_025664
NT_005655	NT_022503	NT_022632	NT_033024	NT_022416	NT_022432	NT_033020	NT_033035
NT_033042	NT_005832	NT_022502	NT_005772	NT_019358	NT_005591	NT_005775	NT_022616
NT_005540	NT_029939	NT_005616	NT_005539	NT_022555	NT_005849	NT_005657	NT_005678
NT_005846	NT_005612	NT_033030	NT_022463	NT_022594	NT_022449	NT_022421	NT_005744
NT_022565	NT_022518	NT_005638	NT_022397	NT_022700	NT_022422	NT_025667	NT_033052
NT_022472	NT_033033	NT_022526	NT_022674	NT_022458	NT_022509	NT_005635	NT_033053
NT_005950	NT_022396	NT_005952	NT_022406	NT_022676	NT_029253	NT_030638	NT_005910
NT_022549	NT_033009	NT_005911	NT_005962	NT_031766	NT_005883	NT_005501	NT_005571
NT_033017	NT_033013	NT_029928	NT_033010	NT_005834	NT_005535	NT_033012	NT_033016
NT_022508

NT_005571

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005571	AC016947	199095002	1	RH45557	3	46.91					2	AC022382,	AC008034, AC011610, AC011610, AC016947, AC018829, AC021996, AC022382, AC066599, AC068315, AF176815
S/G/Y/R/B/O	NT_005571	AC026518	199097931	1
S/G/Y/R/B/O	NT_005571	AC026101	199324789	3	RH30853			3	8938.00			1	AC016947, AC092966,	AC016947, AC021846, AC026101, AC092966
S/G/Y/R/B/O	NT_005571	AC026101	199324789	3	RH42730	3	722.71					1	AC016947, AC092966,	AC016947, AC021846, AC026101, AC092966
S/G/Y/R/B/O	NT_005571	AC092966	199397739	1	RH58186	3	723.93					1		AC021846, AC092966
S/G/Y/R/B/O	NT_005571	AC092966	199397739	1	WI-19455					3	874.90	1		AC021846, AC092966
S/G/Y/R/B/O	NT_005571	AC092966	199397773	1	RH98779	3	722.71					1		AC021846, AC092966
S/G/Y/R/B/O	NT_005571	AC092966	199477224	1	RH92253	3	723.93					1	AC068162, AC105057,	AC021846, AC068162, AC092966, AC105057
S/G/Y/R/B/O	NT_005571	AC068162	199490429	1
S/G/Y/R/B/O	NT_005571	AC105057	199554643	1	RH93717	3	723.93					1	AC068162,	AC068162, AC105057
S/G/Y/R/B/O	NT_005571	AC105057	199639735	1	RH102079	3	724.55					2	AC024447, AC068162, AC068980,	AC024447, AC068162, AC068980, AC092942, AC105057
S/G/Y/R/B/O	NT_005571	AC068980	199807480	1	RH102079	3	724.55					2	AC024447, AC068162, AC105057,	AC024447, AC068162, AC068980, AC092942, AC105057
S/G/Y/R/B/O	NT_005571	AC024447	199673936	1
S/G/Y/R/B/O	NT_005571	AC048351	199966927	1	RH14534			3	8966.00	3	878.40	1	AC025847, AC027208,	AC023594, AC025847, AC027208, AC048351, AC092922
S/G/Y/R/B/O	NT_005571	AC048351	199966927	1	RH58670	3	736.26					1	AC025847, AC027208,	AC023594, AC025847, AC027208, AC048351, AC092922
S/G/Y/R/B/O	NT_005571	AC048351	200005597	1	RH36294	3	724.55					1	AC025847, AC027208,	AC023594, AC025847, AC027208, AC048351, AC092922
S/G/Y/R/B/O	NT_005571	AC048351	200007540	1	RH58013	3	724.55			3	878.40	1	AC025847, AC027208, AC106710,	AC023594, AC025847, AC027208, AC048351, AC092922, AC106710
S/G/Y/R/B/O	NT_005571	AC027208	200017948	1
S/G/Y/R/B/O	NT_005571	AC106710	200020885	1
S/G/Y/R/B/O	NT_005571	AC025847	200029639	1	RH74626			3	8961.00			1		AC025847
S/G/Y/R/B/O	NT_005571	AC025847	200029710	1	RH58555	3	725.06					1		AC025847
S/G/Y/R/B/O	NT_005571	AC025847	200029710	1	SGC38140					3	898.70	1		AC025847
S/G/Y/R/B/O	NT_005571	AC025847	200030515	1	RH65511	3	724.55					1	AC069421,	AC025847, AC069421
S/G/Y/R/B/O	NT_005571	AC025847	200030728	1	WI-8511					3	877.80	1	AC069421,	AC025847, AC069421
S/G/Y/R/B/O	NT_005571	AC025847	200030728	1	RH58373	3	720.90					1	AC069421,	AC025847, AC069421
S/G/Y/R/B/O	NT_005571	AC025847	200031076	1	RH78614	3	725.06					1	AC069421,	AC025847, AC069421
S/G/Y/R/B/O	NT_005571	AC025847	200036082	1	RH41528	3	724.55					1	AC026529, AC069421, AC106710, AC112490,	AC025847, AC026529, AC069421, AC083906, AC106710, AC112490
S/G/Y/R/B/O	NT_005571	AC069421	200161384	3	RH103296	3	725.06					1	AC023596, AC026529, AC112490,	AC023596, AC026529, AC069421, AC083906, AC112490
S/G/Y/R/B/O	NT_005571	AC069421	200173097	3	RH58697	3	725.06	3	8970.00			1	AC023596, AC026529, AC112490,	AC023596, AC026529, AC069421, AC112490
S/G/Y/R/B/O	NT_005571	AC069421	200173097	3	SGC33708					3	896.30	1	AC023596, AC026529, AC112490,	AC023596, AC026529, AC069421, AC112490
S/G/Y/R/B/O	NT_005571	AC069421	200173157	3	RH65988	3	724.55					1	AC023596, AC026529, AC112490,	AC023596, AC026529, AC069421, AC112490
S/G/Y/R/B/O	NT_005571	AC069421	200174468	3	RH45449	3	724.55					1	AC023596, AC112490,	AC023596, AC069421, AC083906, AC112490
S/G/Y/R/B/O	NT_005571	AC112490	200186698	1
S/G/Y/R/B/O	NT_005571	AC023596	200211064	1
S/G/Y/R/B/O	NT_005571	AC026529	200222875	1
S/G/Y/R/B/O	NT_005571	AC080129	200295274	1	RH92591	3	725.06					1		AC080129
S/G/Y/R/B/O	NT_005571	AC080129	200300777	1	RH93226	3	725.06					1		AC080129, L19314
S/G/Y/R/B/O	NT_005571	AC080129	200302844	1	RH75855	3	741.09					1		AC080129, L19314
S/G/Y/R/B/O	NT_005571	AC024559	200439521	3	RH30852			3	8974.00			1		AC024559
S/G/Y/R/B/O	NT_005571	AC024559	200444208	3	RH99184	3	725.06					1		AC024559
S/G/Y/R/B/O	NT_005571		-		RH91429	3	725.06					0
S/G/Y/R/B/O	NT_005571		-		RH33260			3	8933.00			1	AC068644,	AC068644
S/G/Y/R/B/O	NT_005571		-		WI-18936					3	879.60	1	AC069213,	AC069213