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  Chromosome 3 - RH Maps - Single Contig
 

Chromosome 3 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_005927 NT_029265 NT_028123 NT_006044 NT_022517 NT_005507 NT_022516 NT_005564
NT_005762 NT_005646 NT_028139 NT_033044 NT_005502 NT_022539 NT_022464 NT_005580
NT_033049 NT_005498 NT_006036 NT_005825 NT_029949 NT_005991 NT_005585 NT_022567
NT_028129 NT_005990 NT_030623 NT_022439 NT_006014 NT_033032 NT_005986 NT_033015
NT_033038 NT_022552 NT_005787 NT_033040 NT_022481 NT_005607 NT_033026 NT_005999
NT_005531 NT_022473 NT_022423 NT_005510 NT_022510 NT_022665 NT_028127 NT_022400
NT_005530 NT_029258 NT_022442 NT_005769 NT_005526 NT_022540 NT_022717 NT_005644
NT_022446 NT_005583 NT_033034 NT_005882 NT_033036 NT_022419 NT_006031 NT_022551
NT_022459 NT_033029 NT_022713 NT_022460 NT_033011 NT_022554 NT_022720 NT_005684
NT_005663 NT_033018 NT_022420 NT_033043 NT_022642 NT_005791 NT_022452 NT_022435
NT_033028 NT_022497 NT_022625 NT_005568 NT_022401 NT_033031 NT_026983 NT_022475
NT_033037 NT_022451 NT_005509 NT_005527 NT_033050 NT_030634 NT_033041 NT_005863
NT_022454 NT_022607 NT_022453 NT_025670 NT_030622 NT_033045 NT_022728 NT_031768
NT_019350 NT_022434 NT_029256 NT_022405 NT_022569 NT_006042 NT_022484 NT_005795
NT_015150 NT_022445 NT_030625 NT_005532 NT_029269 NT_022455 NT_029931 NT_033022
NT_029257 NT_005513 NT_005994 NT_030635 NT_022411 NT_005824 NT_033021 NT_005543
NT_005588 NT_006029 NT_022513 NT_005523 NT_033014 NT_006025 NT_022404 NT_005823
NT_033019 NT_022393 NT_025663 NT_005567 NT_030630 NT_005969 NT_033051 NT_025664
NT_005655 NT_022503 NT_022632 NT_033024 NT_022416 NT_022432 NT_033020 NT_033035
NT_033042 NT_005832 NT_022502 NT_005772 NT_019358 NT_005591 NT_005775 NT_022616
NT_005540 NT_029939 NT_005616 NT_005539 NT_022555 NT_005849 NT_005657 NT_005678
NT_005846 NT_005612 NT_033030 NT_022463 NT_022594 NT_022449 NT_022421 NT_005744
NT_022565 NT_022518 NT_005638 NT_022397 NT_022700 NT_022422 NT_025667 NT_033052
NT_022472 NT_033033 NT_022526 NT_022674 NT_022458 NT_022509 NT_005635 NT_033053
NT_005950 NT_022396 NT_005952 NT_022406 NT_022676 NT_029253 NT_030638 NT_005910
NT_022549 NT_033009 NT_005911 NT_005962 NT_031766 NT_005883 NT_005501 NT_005571
NT_033017 NT_033013 NT_029928 NT_033010 NT_005834 NT_005535 NT_033012 NT_033016
NT_022508


  NT_005986
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005986AC113933513115181          
S/G/Y/R/B/O NT_005986AC103589513502091          
S/G/Y/R/B/O NT_005986AC096887513611881RH650373162.26    3AC093897, AC103589, AL353587, AC093897, AC096887, AC103589, AC114782, AL353587, AL583837
S/G/Y/R/B/O NT_005986AC096887523547741RH460443164.74    1AC103589, AC096887, AC103589
S/G/Y/R/B/O NT_005986AC097015514886901RH124663164.74    1 AC097015
S/G/Y/R/B/O NT_005986AC097015514888001RH262753161.80    1 AC097015
S/G/Y/R/B/O NT_005986AC097015515219161RH586093161.69  3216.301 AC097015
S/G/Y/R/B/O NT_005986AC097015515219291RH796743164.44    1 AC097015
S/G/Y/R/B/O NT_005986AC097015515643341RH583193166.86    2AC112218, AC097015, AC112218
S/G/Y/R/B/O NT_005986AC097015515643341SGC34070    3237.002AC112218, AC097015, AC112218
S/G/Y/R/B/O NT_005986AC097015515643341RH698213168.29    2AC112218, AC097015, AC112218
S/G/Y/R/B/O NT_005986AC097015515671051RH416393168.81    2AC112218, AC097015, AC112218
S/G/Y/R/B/O NT_005986AC097015515682921RH912533159.69    2AC112218, AC097015, AC112218
S/G/Y/R/B/O NT_005986AC112218516045431RH912533159.69    2AC097015, AC097015, AC112218
S/G/Y/R/B/O NT_005986AC112218516045711RH416323173.80    1AC097015, AC097015, AC112218
S/G/Y/R/B/O NT_005986AC112218516057221RH416393168.81    2AC097015, AC097015, AC112218
S/G/Y/R/B/O NT_005986AC112218516083111RH583193166.86    2AC097015, AC097015, AC112218
S/G/Y/R/B/O NT_005986AC112218516083111SGC34070    3237.002AC097015, AC097015, AC112218
S/G/Y/R/B/O NT_005986AC112218516083111RH698213168.29    2AC097015, AC097015, AC112218
S/G/Y/R/B/O NT_005986AC092035516499943          
S/G/Y/R/B/O NT_005986AC005905518280463RH125343166.24    1 AC005905, AC023231
S/G/Y/R/B/O NT_005986AC021470519938781RH424083170.73  3219.202AC024149, AC021470, AC024149
S/G/Y/R/B/O NT_005986AC021470519938781RH455  32325.00  2AC024149, AC021470, AC024149
S/G/Y/R/B/O NT_005986AC021470520478751RH32414  32325.00  2AC024149, AC068426, AC021470, AC024149, AC068426
S/G/Y/R/B/O NT_005986AC021470520493441RH672793173.07    2AC024149, AC068426, AC021470, AC024149, AC068426
S/G/Y/R/B/O NT_005986AC068426519611411          
S/G/Y/R/B/O NT_005986AC012467521224063RH1040373166.24    1AC068426, AC012467, AC068426
S/G/Y/R/B/O NT_005986AC012467521359623RH9048  32330.00  1AC068426, AC012467, AC068426
S/G/Y/R/B/O NT_005986AC012467521366043RH588203173.6532330.003216.301AC068426, AC012467, AC023204, AC068426
S/G/Y/R/B/O NT_005986AC012467521378263RH416073173.07    1AC068426, AC012467, AC068426
S/G/Y/R/B/O NT_005986AC012467521411373RH1022173173.07    1AC068426, AC012467, AC068426
S/G/Y/R/B/O NT_005986AC012467521415763RH676983174.18    1AC068426, AC012467, AC068426
S/G/Y/R/B/O NT_005986AC012467521897323RH37810  32336.00  1AC113172, AC012467, AC113172
S/G/Y/R/B/O NT_005986AC012467521899543RH166653173.17    1AC113172, AC012467, AC113172
S/G/Y/R/B/O NT_005986AC012467521903283RH449913159.69    1AC113172, AC012467, AC113172
S/G/Y/R/B/O NT_005986AC012467521919333RH990503173.07    1AC113172, AC113172
S/G/Y/R/B/O NT_005986AC012467521923663RH581193173.17  3216.301AC113172, AC012467, AC113172
S/G/Y/R/B/O NT_005986AC012467522083003RH1034043173.17    1AC113172, AC012467, AC113172
S/G/Y/R/B/O NT_005986AC012467522090323RH486213173.17    1AC113172, AC012467, AC113172
S/G/Y/R/B/O NT_005986AC113172522406521          
S/G/Y/R/B/O NT_005986AC109582523974891          
S/G/Y/R/B/O NT_005986AC099667524743663RH760093164.74    1AC109582, AC099667, AC109582
S/G/Y/R/B/O NT_005986AC099667525357453RH415263164.33    1AC109582, AC099667, AC109582
S/G/Y/R/B/O NT_005986AC099667525366203RH583923165.73  3216.201AC109582, AC099667, AC109582
S/G/Y/R/B/O NT_005986AC099667525385453WI-3521    3216.201AC109582, AC099667, AC109582
S/G/Y/R/B/O NT_005986AC099667525421543RH269823164.33    1AC109582, AC099667, AC109582, U42015
S/G/Y/R/B/O NT_005986AC006254525530903RH42911  32272.00  1AC099667, AC109582, AC099667, AC109582
S/G/Y/R/B/O NT_005986AC006254525532643RH931873164.33    1AC099667, AC109582, AC006254, AC099667, AC109582
S/G/Y/R/B/O NT_005986AC006254525603463RH168703164.33    1AC099667, AC109582, AC006254, AC099667, AC109582, U43163
S/G/Y/R/B/O NT_005986AC006254525650003RH587523161.10  3218.001AC099667, AC006254, AC099667


  NT_005986 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005986AC006254525817203RH14151  32272.00  1AC099667, AC006254, AC099667, X75318
S/G/Y/R/B/O NT_005986AC006254525836863RH177773164.66    1AC099667, AC006254, AC099667
S/G/Y/R/B/O NT_005986AC006254525951753RH417023166.75    1AC099667, AC006254, AC099667
S/G/Y/R/B/O NT_005986AC006254526572163RH1028213163.92    1AC012522, AC104446, AC006254, AC012522, AC104446
S/G/Y/R/B/O NT_005986AC006254526620043RH580883164.44  3214.101AC012522, AC104446, AC006254, AC012522, AC104446
S/G/Y/R/B/O NT_005986AC006254526649633RH1029563164.33    1AC012522, AC104446, AC006254, AC012522, AC104446
S/G/Y/R/B/O NT_005986AC006254526656123RH8802  32253.00  1AC012522, AC104446, AC006254, AC012522, AC104446
S/G/Y/R/B/O NT_005986AC104446526776271RH586073164.5532250.003216.901 AC104446
S/G/Y/R/B/O NT_005986AC104446526776841RH472993159.69    1AC012522, AC012522, AC104446
S/G/Y/R/B/O NT_005986AC104446526790131RH128413164.74    1AC012522, AC012522, AC104446
S/G/Y/R/B/O NT_005986AC104446526790381RH99793164.55    1AC012522, AC012522, AC104446
S/G/Y/R/B/O NT_005986AC104446526809561RH582603164.22  3214.201AC012522, AC012522, AC104446
S/G/Y/R/B/O NT_005986AC104446527477411RH415183162.09    1AC012522, AC105934, AC112215, AC012522, AC104446, AC105934, AC112215
S/G/Y/R/B/O NT_005986AC104446527477951RH676893162.37    1AC012522, AC105934, AC112215, AC012522, AC104446, AC105934, AC112215
S/G/Y/R/B/O NT_005986AC105934528256311RH1040963162.70    1AC104446, AC112215, AC104446, AC105934, AC112215
S/G/Y/R/B/O NT_005986AC105934528275941RH926273164.33    1AC112215, AC105934, AC112215
S/G/Y/R/B/O NT_005986AC105934528276761RH583703162.48  3214.301AC112215, AC105934, AC112215
S/G/Y/R/B/O NT_005986AC105934528277601RH274893163.48    1AC112215, AC105934, AC112215
S/G/Y/R/B/O NT_005986AC105934528283541RH8805  32247.00  1AC112215, AC105934, AC112215
S/G/Y/R/B/O NT_005986AC112215527250361RH166583162.70    1AC012522, AC104446, AC105934, AC012522, AC104446, AC105934, AC112215
S/G/Y/R/B/O NT_005986AC112215528142111RH415793162.52    1AC104446, AC105934, AC104446, AC105934, AC112215
S/G/Y/R/B/O NT_005986AC112215528158721RH1030933160.24    1AC104446, AC105934, AC104446, AC105934, AC112215
S/G/Y/R/B/O NT_005986AC112215528171011RH587713164.33  3214.101AC104446, AC105934, AC104446, AC105934, AC112215
S/G/Y/R/B/O NT_005986AC112215528210181RH464993161.76    1AC104446, AC105934, AC104446, AC105934, AC112215
S/G/Y/R/B/O NT_005986AC112215528369461RH937583162.41    1AC105934, AC105934, AC112215
S/G/Y/R/B/O NT_005986AC112215528507901RH683133162.70    1AC105934, AC105934, AC112215
S/G/Y/R/B/O NT_005986AC012522528401471          
S/G/Y/R/B/O NT_005986AC006208528822153RH32377  32250.003214.201AC105934, AC112215, AC006208, AC105934, AC112215
S/G/Y/R/B/O NT_005986AC006208528822153RH178073162.37    1AC105934, AC112215, AC006208, AC105934, AC112215
S/G/Y/R/B/O NT_005986AC006208528822173RH585303160.13  3214.201 AC006208
S/G/Y/R/B/O NT_005986AC006208528935953RH913773162.70    1 AC006208
S/G/Y/R/B/O NT_005986AC006208529238193RH791543162.70    1AC112215, AC006208, AC112215, M37984
S/G/Y/R/B/O NT_005986AC006208529240023RH762173164.33    1AC112215, AC006208, AC112215, M37984
S/G/Y/R/B/O NT_005986AC006208529240063RH584943162.70  3214.201AC112215, AC006208, AC112215, M37984
S/G/Y/R/B/O NT_005986AC006208529516433RH38167  32242.00  1 AC006208, AC094021
S/G/Y/R/B/O NT_005986AC006208529516753RH754383161.03    1 AC006208, AC094021
S/G/Y/R/B/O NT_005986AC006208529518023RH981953162.70    1 AC094021
S/G/Y/R/B/O NT_005986AC092045529739971RH367263162.59    1AC006208, AC006208, AC092045, AC094021
S/G/Y/R/B/O NT_005986AC092045529744431WI-3967    3214.201AC006208, AC006208, AC092045, AC094021
S/G/Y/R/B/O NT_005986AC092045529951531RH1040463162.48    1 AC092045, AC094021
S/G/Y/R/B/O NT_005986AC092045530002711RH679213162.19    1AL118558, AC022281, AC092045, AL118558, AY052369
S/G/Y/R/B/O NT_005986AC092045530067221RH656573162.70    1 AC092045, AC094021
S/G/Y/R/B/O NT_005986AC092045530351921RH31685  32242.00  1AC044892, AC044892, AC092045, AC094021
S/G/Y/R/B/O NT_005986AC092045530818131RH583973161.80  3212.901AC044892, AC044892, AC092045, AC094021
S/G/Y/R/B/O NT_005986AC092045530819611RH781333162.30    1AC044892, AC044892, AC092045, AC094021
S/G/Y/R/B/O NT_005986AC092045531178261RH586063163.67  3214.401AC044892, AC044892, AC092045, AC094021
S/G/Y/R/B/O NT_005986AC092045531196731RH583513164.3332250.003216.301AC044892, AC044892, AC092045, AC094021
S/G/Y/R/B/O NT_005986AC092045531204701RH416343162.70    1AC044892, AC044892, AC092045, AC094021
S/G/Y/R/B/O NT_005986AC006252531247433RH128103162.19    1AC044892, AC092045, AC006252, AC044892, AC092045, AC094021
S/G/Y/R/B/O NT_005986AC006252531247913RH107173162.37    1AC044892, AC092045, AC006252, AC044892, AC092045, AC094021


  NT_005986 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005986AC006252531464163RH474673164.33    1AC044892, AC097637, AC006252, AC044892, AC094021, AC097637
S/G/Y/R/B/O NT_005986AC006252531609543RH585703161.9832244.003214.001AC044892, AC097637, AC006252, AC044892, AC097637
S/G/Y/R/B/O NT_005986AC006252531609893RH699323162.70    1AC044892, AC097637, AC006252, AC044892, AC097637
S/G/Y/R/B/O NT_005986AC006252531725473RH779063162.70    1AC044892, AC097637, AC006252, AC044892, AC097637
S/G/Y/R/B/O NT_005986AC097637532997563RH991273162.92    1AC115284, AC097637, AC115284
S/G/Y/R/B/O NT_005986AC115284533261791RH104863176.11    1AC097637, AC097637, AC115284
S/G/Y/R/B/O NT_005986AC115284533262051RH117723160.02    1AC097637, AC097637, AC115284
S/G/Y/R/B/O NT_005986AC044892533657061          
S/G/Y/R/B/O NT_005986AC097636534470931RH116083160.02    1AC006255, AC115284, AC006255, AC097636, AC115284
S/G/Y/R/B/O NT_005986AC097636534674391RH585443160.02  3212.801 AC097636
S/G/Y/R/B/O NT_005986AC097636535728871RH921623160.13    1 AC097636
S/G/Y/R/B/O NT_005986AC097636536033061RH983933160.47    1 AC097636
S/G/Y/R/B/O NT_005986AC097636536157371RH986873162.59    1 AC097636
S/G/Y/R/B/O NT_005986AC006255534785343RH767563159.69    1AC097636, AC115284, AC006255, AC097636, AC115284, AF257772
S/G/Y/R/B/O NT_005986AC006255534874533RH457483176.32    1AC097636, AC115284, AC006255, AC097636, AC115284
S/G/Y/R/B/O NT_005986AC006255534874923RH588623162.63  3212.901AC097636, AC115284, AC006255, AC097636, AC115284
S/G/Y/R/B/O NT_005986AC006255535024953RH582773159.80  3213.201AC097636, AC115284, AC006255, AC097636, AC115284
S/G/Y/R/B/O NT_005986AC099050537154163RH580473160.13  3211.701 AB045011, AC099050
S/G/Y/R/B/O NT_005986AC099050537155373RH107243161.32    1 AB045011, AC099050
S/G/Y/R/B/O NT_005986AC099050537155763RH664053161.32    1 AB045011, AC099050
S/G/Y/R/B/O NT_005986AC099050537686353RH1042933161.32    1 AC099050
S/G/Y/R/B/O NT_005986AC099050537689393RH459183161.32    1 AC099050
S/G/Y/R/B/O NT_005986AC092037539968941RH579243161.69  3209.601AC067763, AC067763, AC092037
S/G/Y/R/B/O NT_005986AC092037539968941RH109123160.9132201.00  1AC067763, AC067763, AC092037
S/G/Y/R/B/O NT_005986AC092037539970061RH417783160.02    1AC067763, AC067763, AC092037
S/G/Y/R/B/O NT_005986AC092037539986971RH933543161.10    1AC067763, AC067763, AC092037
S/G/Y/R/B/O NT_005986AC092037540003951RH581743160.13  3211.701AC067763, AC067763
S/G/Y/R/B/O NT_005986AC092037540054531RH13919  32208.00  1AC067763, AC067763, AC092037
S/G/Y/R/B/O NT_005986AC092037540054781RH585933160.35  3212.201AC067763, AC067763, AC092037
S/G/Y/R/B/O NT_005986AC092037540055081RH777223161.10    1AC067763, AC067763, AC092037
S/G/Y/R/B/O NT_005986AC092037540110531RH127523160.98    1AC067763, AC067763, AC092037
S/G/Y/R/B/O NT_005986AC096886540166733          
S/G/Y/R/B/O NT_005986AC067763541793351          
S/G/Y/R/B/O NT_005986 - RH1029823173.07    0AC012467, AC113172, AC012467, AC113172
S/G/Y/R/B/O NT_005986 - RH14300  32250.00  0AC024102, AC024102
S/G/Y/R/B/O NT_005986 - RH1035153164.55    1AC115282, AC115282
S/G/Y/R/B/O NT_005986 - RH32698  32263.00  0AC090958, AC090958
S/G/Y/R/B/O NT_005986 - RH177983161.43    0 AF294032
S/G/Y/R/B/O NT_005986 - RH37863  32250.00  2AC069212, AC104330, AC069212, AC104330
S/G/Y/R/B/O NT_005986 - RH185333160.98    0  
S/G/Y/R/B/O NT_005986 - RH42883  32250.00  2AC069212, AC104330, AC069212, AC104330
S/G/Y/R/B/O NT_005986 - RH365163164.33    0  
S/G/Y/R/B/O NT_005986 - RH414903162.52    1AC027623, AC027623, AL512381
S/G/Y/R/B/O NT_005986 - RH415393162.30    0AC067763, AC092037, AC067763, AC092037
S/G/Y/R/B/O NT_005986 - RH415763160.24    0  
S/G/Y/R/B/O NT_005986 - RH419363160.47    0  
S/G/Y/R/B/O NT_005986 - RH489353164.74    0  
S/G/Y/R/B/O NT_005986 - RH582093161.25  3217.500AC006254, AC012522, AC104446, AC006254, AC012522, AC104446
S/G/Y/R/B/O NT_005986 - RH652923160.02    0AC092045, AC092045, AC094021
S/G/Y/R/B/O NT_005986 - RH690443162.92    0AC099050, AB045011, AC099050


  NT_005986 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005986 - RH753683159.80    0 More than 15
S/G/Y/R/B/O NT_005986 - RH803853162.52    0  
S/G/Y/R/B/O NT_005986 - RH914733162.70    0  
S/G/Y/R/B/O NT_005986 - RH915273159.80    0  
S/G/Y/R/B/O NT_005986 - RH928973161.03    0  
S/G/Y/R/B/O NT_005986 - RH934523162.70    0