Chromosome 3 - RH Maps - Single Contig

Chromosome 3 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_005927	NT_029265	NT_028123	NT_006044	NT_022517	NT_005507	NT_022516	NT_005564
NT_005762	NT_005646	NT_028139	NT_033044	NT_005502	NT_022539	NT_022464	NT_005580
NT_033049	NT_005498	NT_006036	NT_005825	NT_029949	NT_005991	NT_005585	NT_022567
NT_028129	NT_005990	NT_030623	NT_022439	NT_006014	NT_033032	NT_005986	NT_033015
NT_033038	NT_022552	NT_005787	NT_033040	NT_022481	NT_005607	NT_033026	NT_005999
NT_005531	NT_022473	NT_022423	NT_005510	NT_022510	NT_022665	NT_028127	NT_022400
NT_005530	NT_029258	NT_022442	NT_005769	NT_005526	NT_022540	NT_022717	NT_005644
NT_022446	NT_005583	NT_033034	NT_005882	NT_033036	NT_022419	NT_006031	NT_022551
NT_022459	NT_033029	NT_022713	NT_022460	NT_033011	NT_022554	NT_022720	NT_005684
NT_005663	NT_033018	NT_022420	NT_033043	NT_022642	NT_005791	NT_022452	NT_022435
NT_033028	NT_022497	NT_022625	NT_005568	NT_022401	NT_033031	NT_026983	NT_022475
NT_033037	NT_022451	NT_005509	NT_005527	NT_033050	NT_030634	NT_033041	NT_005863
NT_022454	NT_022607	NT_022453	NT_025670	NT_030622	NT_033045	NT_022728	NT_031768
NT_019350	NT_022434	NT_029256	NT_022405	NT_022569	NT_006042	NT_022484	NT_005795
NT_015150	NT_022445	NT_030625	NT_005532	NT_029269	NT_022455	NT_029931	NT_033022
NT_029257	NT_005513	NT_005994	NT_030635	NT_022411	NT_005824	NT_033021	NT_005543
NT_005588	NT_006029	NT_022513	NT_005523	NT_033014	NT_006025	NT_022404	NT_005823
NT_033019	NT_022393	NT_025663	NT_005567	NT_030630	NT_005969	NT_033051	NT_025664
NT_005655	NT_022503	NT_022632	NT_033024	NT_022416	NT_022432	NT_033020	NT_033035
NT_033042	NT_005832	NT_022502	NT_005772	NT_019358	NT_005591	NT_005775	NT_022616
NT_005540	NT_029939	NT_005616	NT_005539	NT_022555	NT_005849	NT_005657	NT_005678
NT_005846	NT_005612	NT_033030	NT_022463	NT_022594	NT_022449	NT_022421	NT_005744
NT_022565	NT_022518	NT_005638	NT_022397	NT_022700	NT_022422	NT_025667	NT_033052
NT_022472	NT_033033	NT_022526	NT_022674	NT_022458	NT_022509	NT_005635	NT_033053
NT_005950	NT_022396	NT_005952	NT_022406	NT_022676	NT_029253	NT_030638	NT_005910
NT_022549	NT_033009	NT_005911	NT_005962	NT_031766	NT_005883	NT_005501	NT_005571
NT_033017	NT_033013	NT_029928	NT_033010	NT_005834	NT_005535	NT_033012	NT_033016
NT_022508

NT_005999

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005999	AC013250	61992413	1
S/G/Y/R/B/O	NT_005999	AC021400	61993896	1
S/G/Y/R/B/O	NT_005999	AC098480	62024105	3	WI-3523					3	229.70	1	AC013250, AC021400,	AC013250, AC021400, AC098480
S/G/Y/R/B/O	NT_005999	AC098480	62096260	3	RH45289	3	198.02					1	AC013250, AC021400,	AC013250, AC021400, AC098480
S/G/Y/R/B/O	NT_005999	AC097357	62183852	1
S/G/Y/R/B/O	NT_005999	AC073064	62187773	1
S/G/Y/R/B/O	NT_005999	AC114398	62251508	1
S/G/Y/R/B/O	NT_005999	AC103587	62441037	3
S/G/Y/R/B/O	NT_005999	AC103921	62484563	3
S/G/Y/R/B/O	NT_005999	AC096919	62664560	3	RH58849	3	198.02			3	231.50	1		AC096919
S/G/Y/R/B/O	NT_005999	AC096919	62667312	3	RH66425	3	198.02					1		AC096919
S/G/Y/R/B/O	NT_005999	AC096919	62714766	3	SGC34642					3	231.20	1		AC068168, AC069295, AC096919
S/G/Y/R/B/O	NT_005999	AC096919	62714766	3	RH58201	3	192.75					1		AC068168, AC069295, AC096919
S/G/Y/R/B/O	NT_005999	AC096919	62714766	3	RH70195	3	196.80					1		AC068168, AC069295, AC096919
S/G/Y/R/B/O	NT_005999	AC098482	62784680	1	RH58267	3	198.02	3	2749.00	3	229.70	1		AC068168, AC069295, AC098482
S/G/Y/R/B/O	NT_005999	AC098482	62785694	1	RH76536	3	196.70					1		AC068168, AC069295, AC098482
S/G/Y/R/B/O	NT_005999	AC098482	62788594	1	RH68149	3	196.80					1		AC069295, AC098482
S/G/Y/R/B/O	NT_005999	AC098482	62792400	1	RH104179	3	198.02					1		AC068168, AC069295, AC098482
S/G/Y/R/B/O	NT_005999	AC022331	62873303	1
S/G/Y/R/B/O	NT_005999	AC004695	62895255	3
S/G/Y/R/B/O	NT_005999	AC104849	63057311	1	RH75200	3	197.21					1		AC104849
S/G/Y/R/B/O	NT_005999	AC104849	63068849	1	RH8808			3	2757.00			1		AC104849
S/G/Y/R/B/O	NT_005999	AC104849	63070241	1	RH13941			3	2753.00			1	AC011747,	AC010758, AC011747, AC021669, AC104849
S/G/Y/R/B/O	NT_005999	AC104849	63070957	1	RH67912	3	198.02					1	AC011747,	AC010758, AC011747, AC021669
S/G/Y/R/B/O	NT_005999	AC105939	63090551	1
S/G/Y/R/B/O	NT_005999	AC092502	63208639	3	RH12127	3	198.02					1		AC092502
S/G/Y/R/B/O	NT_005999	AC092502	63240447	3	RH58453	3	198.02			3	229.70	1		AC092502
S/G/Y/R/B/O	NT_005999	AC092502	63280080	3	RH58347	3	198.02			3	229.70	1		AC074017, AC092502
S/G/Y/R/B/O	NT_005999	AC092502	63280145	3	RH45851	3	198.02					1		AC074017, AC092502
S/G/Y/R/B/O	NT_005999	AC104161	63345113	3	RH58769	3	198.02			3	229.70	1		AC074017, AC104161
S/G/Y/R/B/O	NT_005999	AC104161	63345138	3	RH47457	3	198.02					1		AC074017, AC104161
S/G/Y/R/B/O	NT_005999	AC104161	63345733	3	RH10078	3	190.49					1		AC074017, AC104161
S/G/Y/R/B/O	NT_005999	AC104161	63345772	3	RH91169	3	196.70					1		AC074017, AC104161
S/G/Y/R/B/O	NT_005999	AC104161	63367496	3	D3S1312					3	229.70	1		AC074017, AC104161
S/G/Y/R/B/O	NT_005999	AC104161	63375094	3	RH58610	3	198.02			3	231.50	1		AC074017, AC104161
S/G/Y/R/B/O	NT_005999	AC104161	63384129	3	RH14709			3	2770.00			1		AC074017, AC104161
S/G/Y/R/B/O	NT_005999	AC104161	63384130	3	RH58755	3	198.02			3	231.40	1		AC074017, AC104161
S/G/Y/R/B/O	NT_005999	AC104161	63384261	3	RH10664	3	196.80					1		AC074017, AC104161
S/G/Y/R/B/O	NT_005999	AC104161	63384922	3	RH26452	3	198.02					1		AC074017
S/G/Y/R/B/O	NT_005999	AC104161	63392175	3	RH33711			3	2770.00			1		AC074017, AC104161
S/G/Y/R/B/O	NT_005999	AC104161	63420525	3	RH75310	3	198.02					1		AC018899, AC104161
S/G/Y/R/B/O	NT_005999	AC092039	63503679	3	RH30815			3	2774.00			1		AC092039
S/G/Y/R/B/O	NT_005999	AC092039	63535065	3	RH58907	3	198.02					1	AC027614,	AC018899, AC027614, AC092039
S/G/Y/R/B/O	NT_005999	AC092039	63535065	3	WI-12448					3	240.10	1	AC027614,	AC018899, AC027614, AC092039
S/G/Y/R/B/O	NT_005999	AC092039	63535218	3	RH58158	3	198.02			3	233.20	1	AC027614,	AC018899, AC027614, AC092039
S/G/Y/R/B/O	NT_005999	AC092039	63587712	3	RH75383	3	211.35					1		AC018899, AC092039
S/G/Y/R/B/O	NT_005999	AC027614	63625956	1
S/G/Y/R/B/O	NT_005999	AC093115	63775780	3	WI-4490					3	221.20	1		AC012519, AC093115
S/G/Y/R/B/O	NT_005999	AC096915	63823306	3
S/G/Y/R/B/O	NT_005999	AC104299	63960321	1

NT_005999 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005999	AC068372	64085959	1	RH30816			3	2785.00			1	AC104299,	AC068372, AC104299
S/G/Y/R/B/O	NT_005999	AC099545	64146193	3
S/G/Y/R/B/O	NT_005999	AC099056	64281735	1	RH940			3	2802.00			1	AC068171, AC072020, AC099545,	AC068171, AC072020, AC099056, AC099545
S/G/Y/R/B/O	NT_005999	AC099056	64370440	1	RH92939	3	198.02					1	AC068171, AC072020,	AC068171, AC072020, AC099056
S/G/Y/R/B/O	NT_005999	AC068171	64356606	1
S/G/Y/R/B/O	NT_005999	AC072020	64357869	1
S/G/Y/R/B/O	NT_005999	AC104436	64511016	1	RH41602	3	192.47					1		AC104436
S/G/Y/R/B/O	NT_005999	AC104436	64563716	1	RH35814	3	198.02					1	AC025683,	AC025683, AC104436
S/G/Y/R/B/O	NT_005999	AC104436	64563839	1	RH58408	3	198.02					1	AC025683,	AC025683, AC104436
S/G/Y/R/B/O	NT_005999	AC104436	64563839	1	WI-15921					3	222.60	1	AC025683,	AC025683, AC104436
S/G/Y/R/B/O	NT_005999	AC025683	64539135	1
S/G/Y/R/B/O	NT_005999	AC104162	64746602	1	RH33739			3	2817.00			2		AC104162, AC112199
S/G/Y/R/B/O	NT_005999	AC104162	64779413	1	RH18315	3	191.50					2	AC098569,	AC098569, AC104162, AC112199
S/G/Y/R/B/O	NT_005999	AC098569	64786194	1
S/G/Y/R/B/O	NT_005999	AC092049	64806403	1	RH16786	3	191.50					1	AC098569, AC104162,	AC092049, AC098569, AC104162
S/G/Y/R/B/O	NT_005999	AC092049	64857324	1	RH12589	3	192.16					1	AC098569,	AC063925, AC092049, AC098569, AF032102
S/G/Y/R/B/O	NT_005999	AC092049	64857537	1	RH26408	3	191.54					1	AC098569,	AC063925, AC098569, AF032102
S/G/Y/R/B/O	NT_005999	AC092049	64942196	1	RH58300	3	198.02					1		AC063925, AC092049
S/G/Y/R/B/O	NT_005999	AC092049	64942196	1	SGC35083					3	242.40	1		AC063925, AC092049
S/G/Y/R/B/O	NT_005999	AC092049	64942196	1	RH16334	3	191.29					1		AC063925, AC092049
S/G/Y/R/B/O	NT_005999	AC092049	64947607	1	RH58152	3	200.43					1		AC063925, AC092049
S/G/Y/R/B/O	NT_005999	AC092049	64947607	1	SGC30565					3	243.00	1		AC063925, AC092049
S/G/Y/R/B/O	NT_005999	AC092049	64956532	1	RH75053	3	191.75					1		AC063925, AC092049
S/G/Y/R/B/O	NT_005999	AC092049	64956548	1	RH66810	3	191.22					1		AC063925, AC092049
S/G/Y/R/B/O	NT_005999	AC018656	64969619	1
S/G/Y/R/B/O	NT_005999	AC011312	64970371	1
S/G/Y/R/B/O	NT_005999	AC007944	64984526	1
S/G/Y/R/B/O	NT_005999	AC092040	64999890	3
S/G/Y/R/B/O	NT_005999	AC092419	65041298	1	RH8678			3	2821.00			1	AC007944, AC011312, AC018656, AC092040,	AC007944, AC011312, AC018656, AC092040, AC092419
S/G/Y/R/B/O	NT_005999	AC092419	65041362	1	RH9996	3	192.65					1	AC007944, AC011312, AC018656, AC092040,	AC007944, AC011312, AC018656, AC092040, AC092419
S/G/Y/R/B/O	NT_005999	AC092419	65041662	1	RH58204	3	198.02			3	233.20	1	AC007944, AC011312, AC018656, AC092040,	AC007944, AC011312, AC018656, AC092040, AC092419
S/G/Y/R/B/O	NT_005999	AC092419	65041806	1	RH16200	3	198.02					1	AC007944, AC011312, AC018656, AC092040,	AC007944, AC011312, AC018656, AC092040, AC092419
S/G/Y/R/B/O	NT_005999	AC092419	65048264	1	RH92155	3	198.02					1	AC007944, AC011312, AC018656, AC092040,	AC007944, AC011312, AC018656, AC092040, AC092419
S/G/Y/R/B/O	NT_005999	AC092419	65097448	1	RH66595	3	198.02					1	AC007944, AC011312, AC018656, AC092040,	AC007944, AC011312, AC018656, AC079314, AC092040, AC092419
S/G/Y/R/B/O	NT_005999	AC092419	65110940	1	RH68795	3	198.02					1	AC007944, AC011312, AC018656, AC092040,	AC007944, AC011312, AC018656, AC022504, AC092040, AC092419
S/G/Y/R/B/O	NT_005999	AC092419	65110989	1	RH58654	3	198.02	3	2825.00	3	233.10	1	AC007944, AC011312, AC018656, AC092040,	AC007944, AC011312, AC018656, AC022504, AC092040, AC092419
S/G/Y/R/B/O	NT_005999	AC092419	65168694	1	RH13337	3	198.02	3	2829.00			1	AC007944, AC021875, AC092040,	AC007944, AC021875, AC022504, AC092040, AC092419
S/G/Y/R/B/O	NT_005999	AC021875	65181962	1
S/G/Y/R/B/O	NT_005999	AC103557	65209653	1	RH74994	3	198.02					1		AC022504, AC103557
S/G/Y/R/B/O	NT_005999	AC103557	65305149	1	RH31692			3	2852.00			1		AC103557
S/G/Y/R/B/O	NT_005999	AC096888	65344596	1	RH30817			3	2842.00			1		AC096888
S/G/Y/R/B/O	NT_005999	AC096888	65459974	1	RH80461	3	197.11					1		AC096888
S/G/Y/R/B/O	NT_005999	AC096888	65538239	1	RH58237	3	198.02	3	2857.00			1		AC096888
S/G/Y/R/B/O	NT_005999	AC096888	65538239	1	SGC33668					3	240.10	1		AC096888
S/G/Y/R/B/O	NT_005999	AC096888	65538252	1	RH41667	3	193.07					1		AC096888
S/G/Y/R/B/O	NT_005999		-		RH1348			3	2819.00			2	AC074033, AC114305, AL031847,	AC074033, AC114305, AL031847, AL589792
S/G/Y/R/B/O	NT_005999		-		SGC38198					3	227.70	1	AC114480,	AC114480
S/G/Y/R/B/O	NT_005999		-		RH33128			3	2819.00			1	AC025833, AC112647,	AC025833, AC112647
S/G/Y/R/B/O	NT_005999		-		WI-6529					3	227.80	1	AC099783,	AC092044, AC099783
S/G/Y/R/B/O	NT_005999		-		RH38046			3	2819.00			1	AC092953,	AC092953

NT_005999 (cont)

Links	Contig	Chr Start	STS Marker	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005999	-	WI-17730			3	227.80	1	AC021437, AC113171,	AC021437, AC113171
S/G/Y/R/B/O	NT_005999	-	RH38200	3	2855.00			1	AC026920, AC108741,	AC026920, AC108741
S/G/Y/R/B/O	NT_005999	-	WI-15458			3	227.90	0
S/G/Y/R/B/O	NT_005999	-	RH8624	3	2819.00			2	AC074033, AC114305, AL031847,	AC074033, AC114305, AL031847, AL589792
S/G/Y/R/B/O	NT_005999	-	WI-6691			3	227.90	0
S/G/Y/R/B/O	NT_005999	-	WI-7670			3	228.10	1	AC092418, AC108040, AC114480,	AC092418, AC108040, AC114480
S/G/Y/R/B/O	NT_005999	-	SGC31910			3	229.70	1	AC023346, AC104303,	AC023346, AC104303
S/G/Y/R/B/O	NT_005999	-	CHLC.GATA12E07			3	229.70	1	AC023346, AC105751,	AC023346, AC105751
S/G/Y/R/B/O	NT_005999	-	CHLC.GATA81A05			3	229.70	1	AC104300,	AC016929, AC104300
S/G/Y/R/B/O	NT_005999	-	WI-15222			3	230.80	1	AC025589, AC099058,	AC025589, AC099058
S/G/Y/R/B/O	NT_005999	-	SGC33932			3	231.40	1	AC023346, AC105751, AC112216,	AC023346, AC105751, AC112216
S/G/Y/R/B/O	NT_005999	-	D3S1313			3	231.40	1	AC104437, AC114400,	AC104437, AC114400
S/G/Y/R/B/O	NT_005999	-	SGC33999			3	231.40	1	AC093413, AC093418,	AC069441, AC093413, AC093418
S/G/Y/R/B/O	NT_005999	-	WI-21592			3	233.20	1	AC092059, AC104298,	AC021252, AC092059, AC104298
S/G/Y/R/B/O	NT_005999	-	WI-8718			3	233.20	1	AC079624,	AC079624
S/G/Y/R/B/O	NT_005999	-	WI-10769			3	233.20	1	AC099058,	AC099058
S/G/Y/R/B/O	NT_005999	-	WI-17091			3	233.20	0
S/G/Y/R/B/O	NT_005999	-	WI-18488			3	233.20	1	AC025589,	AC025589
S/G/Y/R/B/O	NT_005999	-	D3S1285			3	233.20	1	AC015475, AC072021,	AC015475, AC072021