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  Chromosome 2 - RH Maps - Single Contig
 

Chromosome 2 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033005 NT_022221 NT_022139 NT_022270 NT_022194 NT_022327 NT_005334 NT_033008
NT_033000 NT_005214 NT_033002 NT_022227 NT_015926 NT_005204 NT_030589 NT_005367
NT_015120 NT_026239 NT_005389 NT_005399 NT_005375 NT_032985 NT_032982 NT_032996
NT_033007 NT_033006 NT_032984 NT_032999 NT_022354 NT_033004 NT_022184 NT_005322
NT_022143 NT_015805 NT_033003 NT_032992 NT_029235 NT_032994 NT_022300 NT_026970
NT_032987 NT_022171 NT_032997 NT_005429 NT_005224 NT_029895 NT_022240 NT_031762
NT_032990 NT_019306 NT_026982 NT_030595 NT_022222 NT_029927 NT_005079 NT_022135
NT_032991 NT_022140 NT_029911 NT_028068 NT_030590 NT_005058 NT_029926 NT_005129
NT_022172 NT_005273 NT_005435 NT_005151 NT_031761 NT_022154 NT_005343 NT_005332
NT_025652 NT_032998 NT_005265 NT_005031 NT_022339 NT_030600 NT_022197 NT_005483
NT_005062 NT_022155 NT_032995 NT_005190 NT_030603 NT_005417 NT_028103 NT_033001
NT_005037 NT_005229 NT_005370 NT_005034 NT_005078 NT_005486 NT_031748 NT_005337
NT_005403 NT_032986 NT_022115 NT_005414 NT_022315 NT_005120 NT_022173 NT_022388
NT_005416 NT_005472 NT_022250 NT_032981 NT_026250


  NT_022194
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_022194AC10525335418351          
S/G/Y/R/B/O NT_022194AC10479435447911RH70847239.80    1 AC104794, AY032750
S/G/Y/R/B/O NT_022194AC10479435453421RH56197246.29    1 AC104794, AY032750
S/G/Y/R/B/O NT_022194AC10479435453421NIB797    254.501 AC104794, AY032750
S/G/Y/R/B/O NT_022194AC10479486022431RH48249246.29    1 AC104794
S/G/Y/R/B/O NT_022194AC10479486036681RH56298247.08  251.301 AC104794
S/G/Y/R/B/O NT_022194AC10479486307951RH47577244.67    1 AC104794
S/G/Y/R/B/O NT_022194AC10479486308231RH74555  2302.00  1 AC104794
S/G/Y/R/B/O NT_022194AC10479486331271RH38060  2300.00  1 AC104794
S/G/Y/R/B/O NT_022194AC10479486331561RH16872239.80    1 AC104794
S/G/Y/R/B/O NT_022194AC10479486332911RH11597239.80    1 AC104794
S/G/Y/R/B/O NT_022194AC10479486357451RH56810246.292305.00248.001 AC104794
S/G/Y/R/B/O NT_022194AC02102137303983D2S281    242.901 AC021021
S/G/Y/R/B/O NT_022194AC02102137303983RH13478231.422137.00  1 AC021021
S/G/Y/R/B/O NT_022194AC09751738533093D2S330    242.901 AC097517
S/G/Y/R/B/O NT_022194AC02745338952421          
S/G/Y/R/B/O NT_022194AC01705339301953CHLC.GATA41B04    239.601AC105253, AC017053, AC105253
S/G/Y/R/B/O NT_022194AC09766041032843          
S/G/Y/R/B/O NT_022194AC07347941819983WI-10562    238.801 AC021179, AC073479
S/G/Y/R/B/O NT_022194AC07977043036443RH37940  29606.00  1 AC021179, AC079770
S/G/Y/R/B/O NT_022194AC07977043036863RH56551230.00  222.901 AC021179, AC079770
S/G/Y/R/B/O NT_022194AC07977043075413RH69963229.74    1 AC021179, AC079770
S/G/Y/R/B/O NT_022194AC07977043080923RH56820230.00  222.001 AC021179, AC079770
S/G/Y/R/B/O NT_022194AC07977043080993RH56838230.00  25.801 AC021179, AC079770
S/G/Y/R/B/O NT_022194AC01072945199543RH47904230.00    1AC108025, AC010729, AC084232, AC108025
S/G/Y/R/B/O NT_022194AC01072945475553RH32148  2123.00  1AC108025, AC010729, AC084232, AC108025
S/G/Y/R/B/O NT_022194AC10802545764471RH26437230.00    1 AC084232, AC108025
S/G/Y/R/B/O NT_022194AC10802545764821RH15937230.00    1 AC084232, AC108025
S/G/Y/R/B/O NT_022194AC10802545823141RH91652229.74    1 AC084232, AC108025
S/G/Y/R/B/O NT_022194AC01229246650731          
S/G/Y/R/B/O NT_022194AC10705746764981          
S/G/Y/R/B/O NT_022194AC01259548302473WI-9892    222.901 AC012595
S/G/Y/R/B/O NT_022194AC07314349191153          
S/G/Y/R/B/O NT_022194AC10748549736103          
S/G/Y/R/B/O NT_022194AC01911549931123          
S/G/Y/R/B/O NT_022194AC10483952051083          
S/G/Y/R/B/O NT_022194AC07992352879943WI-5932    238.601AC027453, AC027453, AC079923
S/G/Y/R/B/O NT_022194AC07992352922293RH99298244.56    1AC027453, AC027453, AC079923
S/G/Y/R/B/O NT_022194AC01707654111793RH14686  2161.00  1 AC017076
S/G/Y/R/B/O NT_022194AC01707654111883RH56456231.42  223.401 AC017076
S/G/Y/R/B/O NT_022194AC01707654118823RH56612244.63  245.301 AC017076
S/G/Y/R/B/O NT_022194AC01707654597873RH70478231.42    1 AC017076
S/G/Y/R/B/O NT_022194AC01707654608773RH33441  2148.00  1 AC017076
S/G/Y/R/B/O NT_022194AC06848155904283SGC32235    245.201 AC068481
S/G/Y/R/B/O NT_022194AC06848155904913RH102437231.42    1 AC068481
S/G/Y/R/B/O NT_022194AC06848155944453RH56948231.52  239.001 AC068481
S/G/Y/R/B/O NT_022194AC06848156053093RH16628231.42    1 AC068481
S/G/Y/R/B/O NT_022194AC06848156068483RH9944232.51    1 AC068481
S/G/Y/R/B/O NT_022194AC01904856375213          
S/G/Y/R/B/O NT_022194AC07331257550023          


  NT_022194 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_022194AC01090458941103RH49475234.502182.00  1 AC010904
S/G/Y/R/B/O NT_022194AC01346060129473RH91985244.85    1 AC013460, AC024640
S/G/Y/R/B/O NT_022194AC06860060821853          
S/G/Y/R/B/O NT_022194AC09258062168423          
S/G/Y/R/B/O NT_022194AC07205363353343          
S/G/Y/R/B/O NT_022194AC00746364496343RH104105234.50    1 AC007463
S/G/Y/R/B/O NT_022194AC00746364864793RH56395235.82  23.501 AC007463
S/G/Y/R/B/O NT_022194AC00746365167603RH56996244.67  251.201 AC007463, AC009020
S/G/Y/R/B/O NT_022194AC00746466106293RH42505235.82    1 AC007464, AC009020
S/G/Y/R/B/O NT_022194AC00746466106293D2S359    252.801 AC007464, AC009020
S/G/Y/R/B/O NT_022194AC00746466106293RH435  2240.00  1 AC007464, AC009020
S/G/Y/R/B/O NT_022194AC00746466497203RH31589  2223.00  1 AC007464, AC009020
S/G/Y/R/B/O NT_022194U9132467320493RH56353244.25  251.201 U91324
S/G/Y/R/B/O NT_022194AC09217768371393          
S/G/Y/R/B/O NT_022194AC10481569352711          
S/G/Y/R/B/O NT_022194AC09261770950203RH102599244.36    1 AC092617
S/G/Y/R/B/O NT_022194AC01174771857133RH31590  2252.00  1 AC010758, AC011747, AC021669
S/G/Y/R/B/O NT_022194AC01174772427393RH102408244.36    1 AC010758, AC011747, AC021669, AF270493
S/G/Y/R/B/O NT_022194AC01174772552703RH56972244.67  251.201 AC010758, AC011747, AC021669
S/G/Y/R/B/O NT_022194AC01174772833693WI-3479    251.201 AC011747
S/G/Y/R/B/O NT_022194AC01174772841333RH18277237.91    1 AC011747
S/G/Y/R/B/O NT_022194AC01174772848083RH56026244.78  249.601 AC011747
S/G/Y/R/B/O NT_022194AC01174772849183RH9981235.62    1 AC011747
S/G/Y/R/B/O NT_022194AC01174772852273RH67130235.92    1 AC011747
S/G/Y/R/B/O NT_022194AC01174772864253RH12340237.91    1 AC011747
S/G/Y/R/B/O NT_022194AC01174772880653RH56573244.43  251.101AC012495, AC011747, AC012495
S/G/Y/R/B/O NT_022194AC01249572939523RH1300  2267.00  1 AC012495
S/G/Y/R/B/O NT_022194AC01249573099283RH56511246.29    1 AC012495
S/G/Y/R/B/O NT_022194AC01249573099283WI-18247    252.601 AC012495
S/G/Y/R/B/O NT_022194AC01249574156933RH36896245.93    1 AC012495
S/G/Y/R/B/O NT_022194AC01249574156943RH56317244.85  251.201 AC012495
S/G/Y/R/B/O NT_022194AC01249574169473RH18247237.91    1 AC012495
S/G/Y/R/B/O NT_022194AC01249574175243RH67264235.92    1 AC012495
S/G/Y/R/B/O NT_022194AC01249574184993RH44871245.99    1 AC012495
S/G/Y/R/B/O NT_022194AC01249574200203RH92405237.91    1 AC012495
S/G/Y/R/B/O NT_022194AC01249574210693RH80026235.92    1 AC012495
S/G/Y/R/B/O NT_022194AC01249574214643RH99216237.91    1 AC012495
S/G/Y/R/B/O NT_022194AC11272375020461          
S/G/Y/R/B/O NT_022194AC09390476427893          
S/G/Y/R/B/O NT_022194AC07978278346163          
S/G/Y/R/B/O NT_022194AC08016279669403RH12299244.67    1 AC080162
S/G/Y/R/B/O NT_022194AC08016279685023RH16639237.91    1 AC080162
S/G/Y/R/B/O NT_022194AC08016279685213RH10289237.91    1 AC080162
S/G/Y/R/B/O NT_022194AC08016279697463RH32092  2312.00  1 AC080162
S/G/Y/R/B/O NT_022194AC08016280199373RH4863239.80  251.201 AC073924, AC080162
S/G/Y/R/B/O NT_022194AC08016280199373RH33826  2319.00  1 AC073924, AC080162
S/G/Y/R/B/O NT_022194AC08016280360293RH56365244.78  251.201 AC080162
S/G/Y/R/B/O NT_022194AC08016280517383RH12866237.91    1 AC073924, AC080162, AP002338
S/G/Y/R/B/O NT_022194AC08016280530053RH70698237.91    1 AC073924, AC080162, AP002338
S/G/Y/R/B/O NT_022194AC09220680876803          


  NT_022194 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_022194AC07319580957833          
S/G/Y/R/B/O NT_022194AC08265181926183          
S/G/Y/R/B/O NT_022194AC01096984108193RH70089239.80    1 AC010969
S/G/Y/R/B/O NT_022194AC01096984793513RH56819244.25  251.201AC027264, AC010969, AC027264
S/G/Y/R/B/O NT_022194AC01096984827293RH66818244.25    1AC027264, AC010969, AC027264
S/G/Y/R/B/O NT_022194AC01096984996383RH16473239.70    1AC027264, AC010969, AC027264
S/G/Y/R/B/O NT_022194AC01096985003393RH16878239.70    1AC027264, AC010969, AC027264
S/G/Y/R/B/O NT_022194AC01096985005723RH15821246.29    1AC027264, AC010969, AC027264
S/G/Y/R/B/O NT_022194AC01096985012953RH17126239.80    1 AC010969
S/G/Y/R/B/O NT_022194AC01096985013923RH10031239.80    1AC027264, AC010969, AC027264
S/G/Y/R/B/O NT_022194AC01096985023523RH102769244.67    1AC027264, AC010969, AC027264
S/G/Y/R/B/O NT_022194AC01096985262783WI-11185    251.201AC027264, AC010969, AC027264
S/G/Y/R/B/O NT_022194AC01096985550873RH56967239.80  251.201AC104794, AC010969, AC104794
S/G/Y/R/B/O NT_022194AC01096985650973RH56886244.78  249.601AC104794, AC010969, AC104794
S/G/Y/R/B/O NT_022194AC01096985652683RH16450239.80    1AC104794, AC010969, AC104794
S/G/Y/R/B/O NT_022194AC02726486068771          
S/G/Y/R/B/O NT_022194 - RH104122244.67    0AC010969, AC027264, AC010969, AC027264
S/G/Y/R/B/O NT_022194 - WI-21210    21.101AC113607, AC116614, AC113607, AC116614
S/G/Y/R/B/O NT_022194 - RH11814239.70    1AC007249, AC007249, AC073952, M31061, M33764, M34158, M81740, X16277
S/G/Y/R/B/O NT_022194 - AFMA070WC9    216.001AC022311, AC022311
S/G/Y/R/B/O NT_022194 - RH11957239.80    1AC007249, AC007249, AC073952
S/G/Y/R/B/O NT_022194 - WI-6142    224.001AC064814, AC064814
S/G/Y/R/B/O NT_022194 - RH12306237.31    1AC007314, AC007314
S/G/Y/R/B/O NT_022194 - WI-14115    224.001AC018685, AC018685
S/G/Y/R/B/O NT_022194 - RH12648237.31    1AC007314, AC007314, AC073952
S/G/Y/R/B/O NT_022194 - TIGR-A004U22    226.001AC114810, AC114810
S/G/Y/R/B/O NT_022194 - RH16612246.29    0  
S/G/Y/R/B/O NT_022194 - WI-1412    226.001AC108488, AC108488, Z25749
S/G/Y/R/B/O NT_022194 - RH17249237.31    1AC018463, AC018463
S/G/Y/R/B/O NT_022194 - D2S2393    227.801AC018685, AC018685
S/G/Y/R/B/O NT_022194 - RH17383239.80    1AC007249, AC007249
S/G/Y/R/B/O NT_022194 - WI-15103    227.801AC108488, AC108488
S/G/Y/R/B/O NT_022194 - RH18306237.31    1AC007314, AC007314, AC073952
S/G/Y/R/B/O NT_022194 - NIB1669    228.101AC092159, AC068963, AC092159, AC092160
S/G/Y/R/B/O NT_022194 - RH18382237.31    1AC018463, AC018463
S/G/Y/R/B/O NT_022194 - WI-21834    228.101AC079779, AC067919, AC079779
S/G/Y/R/B/O NT_022194 - RH22786237.31    1AC099344, AC099344
S/G/Y/R/B/O NT_022194 - D2S2983    228.101AC104684, AC104684
S/G/Y/R/B/O NT_022194 - CHLC.GATA10H09    228.600  
S/G/Y/R/B/O NT_022194 - WI-18192    228.601AC108488, AC108488
S/G/Y/R/B/O NT_022194 - SGC31953    228.601AC009471, AC009471
S/G/Y/R/B/O NT_022194 - RH42291227.55  229.301AC022311, AC022311
S/G/Y/R/B/O NT_022194 - RH48834239.80    0  
S/G/Y/R/B/O NT_022194 - WI-9397    229.300  
S/G/Y/R/B/O NT_022194 - RH56600238.48    1AC092687, AC092687
S/G/Y/R/B/O NT_022194 - WI-3210    229.401AC064814, AC064814
S/G/Y/R/B/O NT_022194 - RH64849237.31    1AC018463, AC018463
S/G/Y/R/B/O NT_022194 - D2S319    231.401AC114810, AC114810
S/G/Y/R/B/O NT_022194 - RH66890235.92    1AC019041, AC019041
S/G/Y/R/B/O NT_022194 - D2S323    231.401AC008276, AC008276


  NT_022194 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_022194 - RH68248235.62    0AC012456, AC012456
S/G/Y/R/B/O NT_022194 - SGC30098    233.301AC093390, AC093390
S/G/Y/R/B/O NT_022194 - RH69302237.31    1AC007314, AC007314
S/G/Y/R/B/O NT_022194 - WI-17765    233.301AC010907, AC108488, AC010907, AC108488
S/G/Y/R/B/O NT_022194 - RH69378239.80    1AC007249, AC007249
S/G/Y/R/B/O NT_022194 - WI-13043    233.601AC009471, AC009471
S/G/Y/R/B/O NT_022194 - RH69684235.82    1AC011994, AC110754, AC011994, AC110754
S/G/Y/R/B/O NT_022194 - TIGR-A004T13    233.801AC011301, AC011301
S/G/Y/R/B/O NT_022194 - RH70399237.31    1AC092687, AC092687
S/G/Y/R/B/O NT_022194 - CHLC.GATA72G11    234.501AC010907, AC108488, AC010907, AC108488
S/G/Y/R/B/O NT_022194 - RH91096245.83    0AC007249, AC007249, M31061, M33764, M81740
S/G/Y/R/B/O NT_022194 - CHLC.GATA44G09    235.601AC022311, AC022311
S/G/Y/R/B/O NT_022194 - RH91279237.91    0  
S/G/Y/R/B/O NT_022194 - D2S2984    236.201AC104056, AC097642, AC097643, AC103913, AC104056
S/G/Y/R/B/O NT_022194 - RH91366246.29    0  
S/G/Y/R/B/O NT_022194 - RH92352239.80    1AC007240, AC007240
S/G/Y/R/B/O NT_022194 - RH93133227.55    1AC022311, AC022311
S/G/Y/R/B/O NT_022194 - RH94195237.31    0  
S/G/Y/R/B/O NT_022194 - RH98873237.86    0