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  Chromosome 2 - RH Maps - Single Contig
 

Chromosome 2 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033005 NT_022221 NT_022139 NT_022270 NT_022194 NT_022327 NT_005334 NT_033008
NT_033000 NT_005214 NT_033002 NT_022227 NT_015926 NT_005204 NT_030589 NT_005367
NT_015120 NT_026239 NT_005389 NT_005399 NT_005375 NT_032985 NT_032982 NT_032996
NT_033007 NT_033006 NT_032984 NT_032999 NT_022354 NT_033004 NT_022184 NT_005322
NT_022143 NT_015805 NT_033003 NT_032992 NT_029235 NT_032994 NT_022300 NT_026970
NT_032987 NT_022171 NT_032997 NT_005429 NT_005224 NT_029895 NT_022240 NT_031762
NT_032990 NT_019306 NT_026982 NT_030595 NT_022222 NT_029927 NT_005079 NT_022135
NT_032991 NT_022140 NT_029911 NT_028068 NT_030590 NT_005058 NT_029926 NT_005129
NT_022172 NT_005273 NT_005435 NT_005151 NT_031761 NT_022154 NT_005343 NT_005332
NT_025652 NT_032998 NT_005265 NT_005031 NT_022339 NT_030600 NT_022197 NT_005483
NT_005062 NT_022155 NT_032995 NT_005190 NT_030603 NT_005417 NT_028103 NT_033001
NT_005037 NT_005229 NT_005370 NT_005034 NT_005078 NT_005486 NT_031748 NT_005337
NT_005403 NT_032986 NT_022115 NT_005414 NT_022315 NT_005120 NT_022173 NT_022388
NT_005416 NT_005472 NT_022250 NT_032981 NT_026250


  NT_026239
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_026239AC016171544418221          
S/G/Y/R/B/O NT_026239AC096583544494423          
S/G/Y/R/B/O NT_026239AC019196545553783RH923012169.80    1 AC019196
S/G/Y/R/B/O NT_026239AC019196545639413RH2660014131.73    2AL355834, AC019196, AL355834
S/G/Y/R/B/O NT_026239AC018713546751133          
S/G/Y/R/B/O NT_026239AC010967546893543          
S/G/Y/R/B/O NT_026239AC016714549268433WI-4077    2228.301 AC016714
S/G/Y/R/B/O NT_026239AC009490549405303          
S/G/Y/R/B/O NT_026239AC009241550990223          
S/G/Y/R/B/O NT_026239AC069157552707453          
S/G/Y/R/B/O NT_026239AC008064555343523RH1967  22232.00  1 AC008064
S/G/Y/R/B/O NT_026239AC008064555345183RH261812171.77    1 AC008064
S/G/Y/R/B/O NT_026239AC007883556615893RH562702170.04  2228.301 AC007883
S/G/Y/R/B/O NT_026239AC007883556826543RH250972170.32    1 AC007883
S/G/Y/R/B/O NT_026239AC008068556906783RH922062170.42    2AC023127, AC008068, AC023127, AC073340
S/G/Y/R/B/O NT_026239AC008068557129213RH696132162.39    1 AC008068
S/G/Y/R/B/O NT_026239AC008068557169603RH565692162.39  2228.401 AC008068, AF101472
S/G/Y/R/B/O NT_026239AC008068557192333RH126442165.89    1 AC008068
S/G/Y/R/B/O NT_026239AC008068557281123RH568012163.31  2228.401 AC008068
S/G/Y/R/B/O NT_026239AC008068557290903RH682702170.32    1 AC008068
S/G/Y/R/B/O NT_026239AC008068557381583RH266502163.20    1 AC008068
S/G/Y/R/B/O NT_026239AC008068557808453RH269402170.32    2AC023127, AC008068, AC023127
S/G/Y/R/B/O NT_026239AC008068557824993SGC35022    2228.401 AC008068
S/G/Y/R/B/O NT_026239AC008068557824993RH563202161.85    1 AC008068
S/G/Y/R/B/O NT_026239AC008068557826893RH359072162.39    1 AC008068
S/G/Y/R/B/O NT_026239AC008068558135823RH934162170.32    1 AC008068
S/G/Y/R/B/O NT_026239AC008280558466693RH565292167.60  2228.301 AC008280
S/G/Y/R/B/O NT_026239AC092622560245733          
S/G/Y/R/B/O NT_026239AC073879561172403RH926122162.39    1 AC023393, AC073879
S/G/Y/R/B/O NT_026239AC073879561683023RH1028192165.89    1AC108929, AC023393, AC073879, AC108929
S/G/Y/R/B/O NT_026239AC073879561689623RH359932162.39    1AC108929, AC023393, AC073879, AC108929
S/G/Y/R/B/O NT_026239AC073879562224853RH921032170.42    1AC108929, AC073879, AC108929
S/G/Y/R/B/O NT_026239AC073879562233863RH1038262170.32    1AC108929, AC073879, AC108929
S/G/Y/R/B/O NT_026239AC108929562397083RH457672165.89    1AC092839, AC092839, AC108929
S/G/Y/R/B/O NT_026239AC092839563646673RH488382165.68    1 AC092839
S/G/Y/R/B/O NT_026239AC092839563831473RH567292163.52  2228.401 AC092839
S/G/Y/R/B/O NT_026239AC093110564423083RH563002170.32  2228.301 AC093110
S/G/Y/R/B/O NT_026239AC093110565219523RH570102172.08  2229.901 AC040988, AC093110
S/G/Y/R/B/O NT_026239AC093110565238613RH695482162.78    1 AC040988, AC093110
S/G/Y/R/B/O NT_026239AC093110565314293RH115632162.57    1AC104781, AC023927, AC040988, AC093110, AC104781
S/G/Y/R/B/O NT_026239AC093110565319443RH801172164.05    1AC104781, AC040988, AC093110, AC104781
S/G/Y/R/B/O NT_026239AC093110565332383RH109072162.57    1AC104781, AC023927, AC040988, AC093110, AC104781
S/G/Y/R/B/O NT_026239AC104781565925391          
S/G/Y/R/B/O NT_026239AC013414568329313RH360632173.29    1AC016171, AC013414, AC016171
S/G/Y/R/B/O NT_026239AC013414568337273RH563822173.92  2231.401AC016171, AC013414, AC016171
S/G/Y/R/B/O NT_026239AC013414568337543RH360732171.98    1AC016171, AC013414, AC016171
S/G/Y/R/B/O NT_026239AC013414568344103RH249632174.12    1AC016171, AC013414, AC016171
S/G/Y/R/B/O NT_026239AC013414568348363RH560532174.26  2231.501 AC013414
S/G/Y/R/B/O NT_026239AC013414568348363RH8515  22229.00  1 AC013414
S/G/Y/R/B/O NT_026239AC013414568349913RH115562162.78    1AC016171, AC013414, AC016171


  NT_026239 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_026239AC013414568395163RH1036652173.02    1AC016171, AC013414, AC016171
S/G/Y/R/B/O NT_026239AC092461568703753RH801592173.92    1AC016171, AC016171, AC092461
S/G/Y/R/B/O NT_026239AC092461568886433RH566402171.98  2231.401AC016171, AC016171, AC092461
S/G/Y/R/B/O NT_026239AC093165570341623RH568342173.92  2233.501 AC093165
S/G/Y/R/B/O NT_026239AC093165570342833RH162642162.78    1 AC093165
S/G/Y/R/B/O NT_026239AC093165570346443RH474112174.12    1 AC093165
S/G/Y/R/B/O NT_026239AC093165570369943RH456292174.15    1 AC093165
S/G/Y/R/B/O NT_026239AC012358570969573RH565792174.26  2233.301 AB061854, AC012358, AC016242
S/G/Y/R/B/O NT_026239AC012358571498713RH568772172.08  2231.401 AC012358, AC016242
S/G/Y/R/B/O NT_026239AC012358571498713RH74588  22210.00  1 AC012358, AC016242
S/G/Y/R/B/O NT_026239AC012358571499063RH171382162.78    1 AC012358, AC016242
S/G/Y/R/B/O NT_026239AC012358571502173RH125712162.78    1 AC012358, AC016242
S/G/Y/R/B/O NT_026239AC012358571522803RH926512174.26    1 AC012358, AC016242
S/G/Y/R/B/O NT_026239AC012358571565273RH938562174.26    1 AC012358, AC016242
S/G/Y/R/B/O NT_026239AC092176572197703          
S/G/Y/R/B/O NT_026239AC019198572350713          
S/G/Y/R/B/O NT_026239AC015982573897353RH666502173.92    1 AC015982
S/G/Y/R/B/O NT_026239AC015982574062753RH366632176.37    1 AC015982
S/G/Y/R/B/O NT_026239AC015982574069353RH566512173.54  2235.601 AC015982
S/G/Y/R/B/O NT_026239AC015982574093223RH568182174.02  2235.401 AC015982
S/G/Y/R/B/O NT_026239AC015982574359533RH363672173.92    1 AC015982
S/G/Y/R/B/O NT_026239AC015982574784193RH912242176.37    1 AC015982
S/G/Y/R/B/O NT_026239AC015982574802423RH1042862173.92    1 AC015982
S/G/Y/R/B/O NT_026239AC023343575736723          
S/G/Y/R/B/O NT_026239AC010895577279833RH568322176.5722259.002235.401 AC010895
S/G/Y/R/B/O NT_026239AC010895577281313RH705322173.33    1  
S/G/Y/R/B/O NT_026239AC010895577286283WI-8771    2235.401 AC010895
S/G/Y/R/B/O NT_026239AC010895577286283RH8056  22259.00  1 AC010895
S/G/Y/R/B/O NT_026239AC010895577376323RH933832173.33    1 AC010895
S/G/Y/R/B/O NT_026239AC010895577511853RH985992176.37    1 AC010895
S/G/Y/R/B/O NT_026239AC096549577779753          
S/G/Y/R/B/O NT_026239AC104661578132143          
S/G/Y/R/B/O NT_026239AC011306578173303          
S/G/Y/R/B/O NT_026239AC007743580438903RH801662174.23    1 AC007743
S/G/Y/R/B/O NT_026239AC007743580560633RH941852176.37    1 AC007743
S/G/Y/R/B/O NT_026239AC007744582478633RH38084  22278.00  1 AC007744
S/G/Y/R/B/O NT_026239AC009507583391093RH929292173.92    1 AC009507
S/G/Y/R/B/O NT_026239AC009507583955413RH6541018417.79    2AC024621, AC009507, AC024621
S/G/Y/R/B/O NT_026239AC008173584463003          
S/G/Y/R/B/O NT_026239AC007971586399933          
S/G/Y/R/B/O NT_026239AC096584587864983          
S/G/Y/R/B/O NT_026239AC010738588001703          
S/G/Y/R/B/O NT_026239AC009406589386473RH136672176.4722293.00  1 AC009406
S/G/Y/R/B/O NT_026239AC108023590762353          
S/G/Y/R/B/O NT_026239 - RH455512170.32    0  
S/G/Y/R/B/O NT_026239 - RH673632171.98    1AC016171, AC016171
S/G/Y/R/B/O NT_026239 - RH693762162.78    0AC012358, AC012358, AC016242
S/G/Y/R/B/O NT_026239 - RH921572169.11    1AC087073, AC092572, AC087073, AC092572