Chromosome 2 - RH Maps - Single Contig

Chromosome 2 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033005	NT_022221	NT_022139	NT_022270	NT_022194	NT_022327	NT_005334	NT_033008
NT_033000	NT_005214	NT_033002	NT_022227	NT_015926	NT_005204	NT_030589	NT_005367
NT_015120	NT_026239	NT_005389	NT_005399	NT_005375	NT_032985	NT_032982	NT_032996
NT_033007	NT_033006	NT_032984	NT_032999	NT_022354	NT_033004	NT_022184	NT_005322
NT_022143	NT_015805	NT_033003	NT_032992	NT_029235	NT_032994	NT_022300	NT_026970
NT_032987	NT_022171	NT_032997	NT_005429	NT_005224	NT_029895	NT_022240	NT_031762
NT_032990	NT_019306	NT_026982	NT_030595	NT_022222	NT_029927	NT_005079	NT_022135
NT_032991	NT_022140	NT_029911	NT_028068	NT_030590	NT_005058	NT_029926	NT_005129
NT_022172	NT_005273	NT_005435	NT_005151	NT_031761	NT_022154	NT_005343	NT_005332
NT_025652	NT_032998	NT_005265	NT_005031	NT_022339	NT_030600	NT_022197	NT_005483
NT_005062	NT_022155	NT_032995	NT_005190	NT_030603	NT_005417	NT_028103	NT_033001
NT_005037	NT_005229	NT_005370	NT_005034	NT_005078	NT_005486	NT_031748	NT_005337
NT_005403	NT_032986	NT_022115	NT_005414	NT_022315	NT_005120	NT_022173	NT_022388
NT_005416	NT_005472	NT_022250	NT_032981	NT_026250

NT_005265

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005265	AC107211	182651588	1
S/G/Y/R/B/O	NT_005265	AC112699	182657406	1
S/G/Y/R/B/O	NT_005265	AC104820	182663253	1
S/G/Y/R/B/O	NT_005265	AC104076	182902921	1	SGC31338					2	888.60	1		AC104076
S/G/Y/R/B/O	NT_005265	AC104076	182902921	1	RH56952	2	576.07					1		AC104076
S/G/Y/R/B/O	NT_005265	AC068196	182981358	3	RH56181	2	575.54					1	AC104076,	AC068196, AC104076
S/G/Y/R/B/O	NT_005265	AC068196	182981358	3	WI-21784					2	869.40	1	AC104076,	AC068196, AC104076
S/G/Y/R/B/O	NT_005265	AC108493	183169821	3	RH37768			10	5386.00			1		AC108493
S/G/Y/R/B/O	NT_005265	AC104131	183311383	3	RH56386	2	597.41			2	923.70	1		AC104131
S/G/Y/R/B/O	NT_005265	AC013445	183376745	3
S/G/Y/R/B/O	NT_005265	AC092649	183558705	3
S/G/Y/R/B/O	NT_005265	AC064864	183724370	3	AFMB353YE9					2	919.80	1		AC064864
S/G/Y/R/B/O	NT_005265	AC093377	183757940	3
S/G/Y/R/B/O	NT_005265	AC068718	183816996	3
S/G/Y/R/B/O	NT_005265	AC098485	183976947	3
S/G/Y/R/B/O	NT_005265	AC007319	184074919	3	RH44998	2	590.19					1		AC007319
S/G/Y/R/B/O	NT_005265	AC007319	184076154	3	RH56790	2	593.65			2	921.20	1		AC007319
S/G/Y/R/B/O	NT_005265	AC007319	184084082	3	RH56719	2	593.65			2	921.30	1		AC007319
S/G/Y/R/B/O	NT_005265	AC007319	184084082	3	RH32594			2	8688.00			1		AC007319
S/G/Y/R/B/O	NT_005265	AC007319	184118247	3	RH93366	2	593.65			2	919.80	1		AC007319
S/G/Y/R/B/O	NT_005265	AC007319	184119698	3	RH93109	2	588.81					1		AC007319
S/G/Y/R/B/O	NT_005265	AC007319	184124437	3	RH56991	2	589.98			2	915.50	1		AC007319, AC046198
S/G/Y/R/B/O	NT_005265	AC007319	184137853	3	RH26320	2	591.94					1		AC007319, AC046198, M58650, M59499
S/G/Y/R/B/O	NT_005265	AC007319	184138682	3	RH56204	2	590.19			2	917.20	1		AC007319, M59499
S/G/Y/R/B/O	NT_005265	AC007319	184179101	3	RH57027	2	593.55			2	919.80	1		AC007319, AC046198
S/G/Y/R/B/O	NT_005265	AC007319	184179132	3	RH67232	2	590.29					1		AC007319, AC046198
S/G/Y/R/B/O	NT_005265	AC007319	184235939	3	RH13366	2	593.65					1		AC007319, AC046198
S/G/Y/R/B/O	NT_005265	AC074020	184257019	3	RH56584	2	590.19			2	917.20	1		AC046198, AC074020
S/G/Y/R/B/O	NT_005265	AC074020	184258891	3	RH70468	2	593.65					1		AC074020
S/G/Y/R/B/O	NT_005265	AC074020	184258973	3	RH25884	2	591.13					1		AC074020
S/G/Y/R/B/O	NT_005265	AC084363	184403435	1
S/G/Y/R/B/O	NT_005265	AC009478	184525658	3	RH30774			2	8380.00			1		AC009478
S/G/Y/R/B/O	NT_005265	AC009478	184545932	3	WI-5538					2	867.60	1	AC084363,	AC009478, AC084363
S/G/Y/R/B/O	NT_005265	AC074098	184577959	3
S/G/Y/R/B/O	NT_005265	AC093750	184603024	1
S/G/Y/R/B/O	NT_005265	AC012669	184635408	3	WI-2535					2	859.30	1	AC093750,	AC012669, AC019035, AC093750
S/G/Y/R/B/O	NT_005265	AC068278	184848844	3	WI-870					2	871.20	1		AC068278
S/G/Y/R/B/O	NT_005265	AC108069	184902660	3
S/G/Y/R/B/O	NT_005265	AC074293	184953630	3
S/G/Y/R/B/O	NT_005265	AC068194	184992027	3
S/G/Y/R/B/O	NT_005265	AC096587	185212995	3	RH102467	2	575.08					1		AC015565, AC022668, AC096587
S/G/Y/R/B/O	NT_005265	AC092642	185321814	3	RH14424			2	8351.00			1		AC021823, AC092642
S/G/Y/R/B/O	NT_005265	AC092642	185321814	3	RH56795	2	574.30					1		AC021823, AC092642
S/G/Y/R/B/O	NT_005265	AC092642	185321814	3	SGC30595					2	870.90	1		AC021823, AC092642
S/G/Y/R/B/O	NT_005265	AC092642	185323450	3	RH27100	2	575.23					1		AC021823, AC022668, AC092642
S/G/Y/R/B/O	NT_005265	AC092642	185388495	3	RH14505			2	8335.00			1		AC021823, AC092642
S/G/Y/R/B/O	NT_005265	AC092642	185388495	3	RH56912	2	573.67					1		AC021823, AC092642
S/G/Y/R/B/O	NT_005265	AC092642	185388495	3	SGC30987					2	870.20	1		AC021823, AC092642
S/G/Y/R/B/O	NT_005265	AC092642	185388611	3	RH57017	2	574.61	2	8328.00			1		AC021823, AC092642
S/G/Y/R/B/O	NT_005265	AC092642	185388611	3	SGC33600					2	870.20	1		AC021823, AC092642

NT_005265 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005265	AC092642	185388775	3	RH16619	2	576.56					1		AC021823, AC092642
S/G/Y/R/B/O	NT_005265	AC062033	185412853	3	RH16646	2	574.82					1		AC021823, AC062033
S/G/Y/R/B/O	NT_005265	AC062033	185413512	3	WI-13543					2	887.70	1		AC021823, AC062033
S/G/Y/R/B/O	NT_005265	AC062033	185413512	3	RH56734	2	557.37					1		AC021823, AC062033
S/G/Y/R/B/O	NT_005265	AC062033	185413636	3	RH56656	2	574.82					1		AC021823, AC062033
S/G/Y/R/B/O	NT_005265	AC062033	185413636	3	TIGR-A004T05					2	869.20	1		AC021823, AC062033
S/G/Y/R/B/O	NT_005265	AC062033	185568264	3	RH70245	2	575.23					1		AC062033
S/G/Y/R/B/O	NT_005265	AC093604	185604309	3
S/G/Y/R/B/O	NT_005265	AC068042	185677241	3	RH92369	2	576.39					1		AC068042
S/G/Y/R/B/O	NT_005265	AC068042	185715970	3	RH79969	2	575.81					1		AC068042
S/G/Y/R/B/O	NT_005265	AC068042	185716020	3	RH57002	2	575.86			2	887.10	1		AC068042
S/G/Y/R/B/O	NT_005265	AC013473	185886078	3	WI-5752					2	870.20	1	AC107211,	AC013473, AC107211
S/G/Y/R/B/O	NT_005265	AC020595	186055273	3	RH68735	2	584.86					1		AC020595, AC022044, AC060758
S/G/Y/R/B/O	NT_005265	AC020595	186104088	3	WI-9025					2	902.90	1		AC020595
S/G/Y/R/B/O	NT_005265	AC020595	186104088	3	RH56663	2	575.08					1		AC020595
S/G/Y/R/B/O	NT_005265	AC020595	186104452	3	RH18091	2	585.45					1		AC020595
S/G/Y/R/B/O	NT_005265	AC020595	186106748	3	RH69434	2	578.13					1		AC020595
S/G/Y/R/B/O	NT_005265	AC013733	186246161	3	RH80773	2	577.61					1	AC073977,	AB009997, AB018693, AC013733, AC073977
S/G/Y/R/B/O	NT_005265	AC073977	186322784	3
S/G/Y/R/B/O	NT_005265	AC009962	186493222	3	RH69390	2	584.65					1		AC009962
S/G/Y/R/B/O	NT_005265	AC009962	186498699	3	RH17714	2	584.75					1		AC009962
S/G/Y/R/B/O	NT_005265	AC009962	186499040	3	RH17051	2	584.65					1		AC009962
S/G/Y/R/B/O	NT_005265	AC064837	186685765	3	RH68882	2	584.65					1	AC011291,	AC011291, AC078936
S/G/Y/R/B/O	NT_005265	AC011291	186697898	3	RH68859	2	586.30					1		AC011291, AC078936
S/G/Y/R/B/O	NT_005265	AC011291	186709531	3	RH10328	2	584.65					1		AC011291, AC078936
S/G/Y/R/B/O	NT_005265	AC011291	186709580	3	RH25823	2	577.51					1		AC011291, AC078936
S/G/Y/R/B/O	NT_005265	AC011291	186710944	3	RH26216	2	577.82					1		AC011291, AC078936
S/G/Y/R/B/O	NT_005265	AC011291	186711273	3	RH45793	2	577.41					1		AC011291, AC078936
S/G/Y/R/B/O	NT_005265	AC011291	186738366	3	RH42520	2	585.24					1		AC011291, AC078936
S/G/Y/R/B/O	NT_005265	AC011291	186738366	3	RH935			2	8431.00			1		AC011291, AC078936
S/G/Y/R/B/O	NT_005265	AC012500	186834144	3
S/G/Y/R/B/O	NT_005265	AC010888	186993661	3	RH56436	2	585.39	2	8431.00	2	924.80	1		AC010888
S/G/Y/R/B/O	NT_005265	AC010888	186993667	3	RH66443	2	576.23					1		AC010888
S/G/Y/R/B/O	NT_005265	AC093111	187141570	3
S/G/Y/R/B/O	NT_005265	AC073951	187143534	1
S/G/Y/R/B/O	NT_005265	AC105396	187346725	3	RH56664	2	585.87					1		AC105396
S/G/Y/R/B/O	NT_005265	AC105396	187346725	3	WI-13407					2	847.60	1		AC105396
S/G/Y/R/B/O	NT_005265	AC105396	187347516	3	RH104078	2	587.15					1		AC012552, AC105396
S/G/Y/R/B/O	NT_005265	AC105396	187347876	3	RH92924	2	557.65					1		AC012552, AC105396
S/G/Y/R/B/O	NT_005265	AC105396	187352187	3	RH92713	2	587.15					1		AC012552, AC105396
S/G/Y/R/B/O	NT_005265	AC105396	187362647	3	RH94198	2	587.15					1		AC012552, AC105396
S/G/Y/R/B/O	NT_005265	AC105396	187402578	3	RH56984	2	587.15					1		AC012552, AC105396
S/G/Y/R/B/O	NT_005265	AC105396	187402578	3	WI-11019					2	847.40	1		AC012552, AC105396
S/G/Y/R/B/O	NT_005265	AC105396	187402630	3	RH17095	2	587.15					1		AC012552, AC105396
S/G/Y/R/B/O	NT_005265	AC108514	187435367	3	RH12577	2	587.15					1		AC108514
S/G/Y/R/B/O	NT_005265	AC108514	187493584	3	RH12037	2	587.15					1		AC108514
S/G/Y/R/B/O	NT_005265	AC064871	187552777	3	RH30039			2	8465.00			1		AC064871
S/G/Y/R/B/O	NT_005265	AC064871	187647253	3	RH92337	2	588.74					1		AC064871
S/G/Y/R/B/O	NT_005265	AC079249	187730158	3	RH36775	2	587.04					1		AC079249
S/G/Y/R/B/O	NT_005265	AC021851	187927858	3	WI-3747					2	905.10	1		AC021851, AC104406

NT_005265 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005265	AC012496	187949737	3
S/G/Y/R/B/O	NT_005265	AC074182	188195816	3	RH30775			2	8475.00			1		AC074182
S/G/Y/R/B/O	NT_005265	AC019141	188262743	3
S/G/Y/R/B/O	NT_005265	AC079161	188266344	3
S/G/Y/R/B/O	NT_005265	AC013415	188427278	3
S/G/Y/R/B/O	NT_005265	AC093639	188462828	3
S/G/Y/R/B/O	NT_005265	AC096555	188696263	3	CHLC.GATA65C03					2	921.60	2		AC096555, AC112188
S/G/Y/R/B/O	NT_005265	AC096555	188719996	3	WI-4126					2	915.50	2		AC096555, AC112188
S/G/Y/R/B/O	NT_005265	AC020584	188769823	3
S/G/Y/R/B/O	NT_005265	AC096646	188927159	3
S/G/Y/R/B/O	NT_005265	AC093769	189081429	3
S/G/Y/R/B/O	NT_005265	AC096667	189315608	3	RH48028	2	588.32					1		AC096667
S/G/Y/R/B/O	NT_005265	AC112720	189371093	3	WI-4320					2	913.30	1		AC112720
S/G/Y/R/B/O	NT_005265	AC010747	189507890	3	RH66239	2	589.98					1		AC010747
S/G/Y/R/B/O	NT_005265	AC023108	189734650	3	CHLC.GATA85E09					2	911.70	1		AC023108
S/G/Y/R/B/O	NT_005265	AC009306	189755680	3
S/G/Y/R/B/O	NT_005265	AC009315	189932082	3
S/G/Y/R/B/O	NT_005265	AC080125	190114271	3	RH80976	4	615.56					2	AC068096, AC093602,	AC068096, AC080125, AC093602
S/G/Y/R/B/O	NT_005265	AC007966	190154733	3
S/G/Y/R/B/O	NT_005265	AC008174	190401700	3	RH92115	2	593.65					1		AC008174
S/G/Y/R/B/O	NT_005265	AC093672	190421945	3
S/G/Y/R/B/O	NT_005265	AC097500	190487602	3
S/G/Y/R/B/O	NT_005265	AC104058	190739789	3	RH70170	2	593.55					1	AC068824,	AC068824, AC098580, AC104058
S/G/Y/R/B/O	NT_005265	AC104058	190739789	3	RH56712	2	591.94			2	918.90	1	AC068200, AC068824,	AC068200, AC068824, AC098580, AC104058
S/G/Y/R/B/O	NT_005265	AC104058	190751816	3	RH56705	2	593.55			2	919.80	1	AC068200, AC068824,	AC068200, AC068824, AC098580, AC104058
S/G/Y/R/B/O	NT_005265	AC093038	190786047	3
S/G/Y/R/B/O	NT_005265	AC017071	190979005	3	RH80725	2	587.90					5	AC023331, AC073325, AC083803, AL442647, Z84720,	AC017071, AC023331, AC073325, AC083803, AL442647, Z84720
S/G/Y/R/B/O	NT_005265	AC017071	190990268	3	RH48029	2	589.38					1		AC017071
S/G/Y/R/B/O	NT_005265	AC017071	190991796	3	RH70102	2	593.65					1		AC017071
S/G/Y/R/B/O	NT_005265	AC017071	190991823	3	RH101977	2	591.94					1		AC017071
S/G/Y/R/B/O	NT_005265	AC018867	191072325	3	RH70209	2	593.65					1		AC015585, AC018867
S/G/Y/R/B/O	NT_005265	AC018867	191072510	3	RH67503	2	593.65					1		AC015585, AC018867
S/G/Y/R/B/O	NT_005265	AC018867	191077615	3	RH56235	2	589.98			2	915.50	1		AC015585, AC018867
S/G/Y/R/B/O	NT_005265	AC018867	191082032	3	RH57133	2	593.65			2	919.80	1		AC015585, AC018867
S/G/Y/R/B/O	NT_005265	AC018867	191089460	3	RH48586	2	593.65					1		AC015585, AC018867
S/G/Y/R/B/O	NT_005265	AC017026	191114735	3
S/G/Y/R/B/O	NT_005265	AC017101	191201465	3	RH26691	2	618.69					1		AC015585, AC017101
S/G/Y/R/B/O	NT_005265	AC017101	191247694	3	RH17666	2	593.65					1		AC017101
S/G/Y/R/B/O	NT_005265	AC017101	191249223	3	RH25970	2	591.94					1		AC017101
S/G/Y/R/B/O	NT_005265	AC017101	191264776	3	RH57065	2	590.19			2	918.40	1		AC017101
S/G/Y/R/B/O	NT_005265	AC017101	191308803	3	RH56121	2	590.19			2	917.20	1		AC017101
S/G/Y/R/B/O	NT_005265	AC017101	191334289	3	RH56589	2	591.54			2	919.80	1		AC017101
S/G/Y/R/B/O	NT_005265	AC098855	191345219	3
S/G/Y/R/B/O	NT_005265	AC103914	191387107	3
S/G/Y/R/B/O	NT_005265	AC018735	191407977	3
S/G/Y/R/B/O	NT_005265	AC023986	191614906	1
S/G/Y/R/B/O	NT_005265	AC068200	191626602	1
S/G/Y/R/B/O	NT_005265	AC068824	191635432	1
S/G/Y/R/B/O	NT_005265		-		RH15571	2	580.66					1	AC096649,	AC096649
S/G/Y/R/B/O	NT_005265		-		RH1343			2	8396.00			0

NT_005265 (cont)

Links	Contig	Chr Start	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005265	-	D2S376					2	888.30	1	AC007277,	AC007277
S/G/Y/R/B/O	NT_005265	-	RH45912	2	589.17					0
S/G/Y/R/B/O	NT_005265	-	RH33339			2	8424.00			1	AC020688, AC027531, AC083974,	AC020688, AC027531, AC083974
S/G/Y/R/B/O	NT_005265	-	WI-5765					2	888.70	1	AC009953,	AC009953
S/G/Y/R/B/O	NT_005265	-	RH46434	2	578.83					1	AC096649, AL357128,	AC011574, AC096649, AL357128
S/G/Y/R/B/O	NT_005265	-	WI-16146					2	888.90	1	AC010092,	AC010092, AC067806, AC084284
S/G/Y/R/B/O	NT_005265	-	RH47596	2	578.03					0	AC020595,	AC020595, AC022044, AC060758
S/G/Y/R/B/O	NT_005265	-	D2S333					2	888.90	1	AC007969,	AC007969
S/G/Y/R/B/O	NT_005265	-	SGC32064					2	889.70	1	AC016723,	AC016723
S/G/Y/R/B/O	NT_005265	-	WI-14612					2	890.00	1	AC017070,	AC017070
S/G/Y/R/B/O	NT_005265	-	WI-19142					2	890.20	1	AC018890,	AC018890, AC025927
S/G/Y/R/B/O	NT_005265	-	CHLC.GATA71D01					2	890.70	1	AC009475,	AC009475
S/G/Y/R/B/O	NT_005265	-	CHLC.GATA31C11					2	891.00	1	AC009475,	AC009475
S/G/Y/R/B/O	NT_005265	-	WI-3276					2	891.70	1	AC110780,	AC110780
S/G/Y/R/B/O	NT_005265	-	SGC35469					2	891.70	1	AC079122, AC092641,	AC079122, AC092641
S/G/Y/R/B/O	NT_005265	-	WI-17537					2	891.80	1	AC007556,	AC007556, AF064073
S/G/Y/R/B/O	NT_005265	-	WI-6497					2	893.00	1	AC009967,	AC009967
S/G/Y/R/B/O	NT_005265	-	WI-4121					2	894.20	1	AC093899,	AC093899
S/G/Y/R/B/O	NT_005265	-	SGC33882					2	895.10	1	AC016772,	AC016772
S/G/Y/R/B/O	NT_005265	-	SGC32051					2	896.90	1	AC016772,	AC016772
S/G/Y/R/B/O	NT_005265	-	SGC31199					2	898.60	1	AC016723,	AC016723
S/G/Y/R/B/O	NT_005265	-	WI-13055					2	899.30	1	AC108146,	AC108146
S/G/Y/R/B/O	NT_005265	-	WI-12975					2	899.90	1	AC010127,	AC010127, AC021673
S/G/Y/R/B/O	NT_005265	-	SGC31767					2	900.20	1	AC016772,	AC016772
S/G/Y/R/B/O	NT_005265	-	WI-16044					2	900.90	1	AC078883,	AC078883
S/G/Y/R/B/O	NT_005265	-	WI-16907					2	902.00	1	AC009495,	AC009495
S/G/Y/R/B/O	NT_005265	-	SGC34492					2	902.80	1	AC064826,	AC064826
S/G/Y/R/B/O	NT_005265	-	WI-3884					2	903.00	2	AC016766,	AC012439, AC013610, AC016766, AC018667, AC068009
S/G/Y/R/B/O	NT_005265	-	RH56400	2	593.65			2	919.80	0	AL645728, AL713970,	AC093615, AL645728, AL713970
S/G/Y/R/B/O	NT_005265	-	RH69502	2	591.83					0