Home    Genome Browser    BLAT Search    Help
  Chromosome 2 - RH Maps - Single Contig
 

Chromosome 2 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033005 NT_022221 NT_022139 NT_022270 NT_022194 NT_022327 NT_005334 NT_033008
NT_033000 NT_005214 NT_033002 NT_022227 NT_015926 NT_005204 NT_030589 NT_005367
NT_015120 NT_026239 NT_005389 NT_005399 NT_005375 NT_032985 NT_032982 NT_032996
NT_033007 NT_033006 NT_032984 NT_032999 NT_022354 NT_033004 NT_022184 NT_005322
NT_022143 NT_015805 NT_033003 NT_032992 NT_029235 NT_032994 NT_022300 NT_026970
NT_032987 NT_022171 NT_032997 NT_005429 NT_005224 NT_029895 NT_022240 NT_031762
NT_032990 NT_019306 NT_026982 NT_030595 NT_022222 NT_029927 NT_005079 NT_022135
NT_032991 NT_022140 NT_029911 NT_028068 NT_030590 NT_005058 NT_029926 NT_005129
NT_022172 NT_005273 NT_005435 NT_005151 NT_031761 NT_022154 NT_005343 NT_005332
NT_025652 NT_032998 NT_005265 NT_005031 NT_022339 NT_030600 NT_022197 NT_005483
NT_005062 NT_022155 NT_032995 NT_005190 NT_030603 NT_005417 NT_028103 NT_033001
NT_005037 NT_005229 NT_005370 NT_005034 NT_005078 NT_005486 NT_031748 NT_005337
NT_005403 NT_032986 NT_022115 NT_005414 NT_022315 NT_005120 NT_022173 NT_022388
NT_005416 NT_005472 NT_022250 NT_032981 NT_026250


  NT_022171
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_022171AC092683989416271RH1027672356.23    2 AC092683, AC092683
S/G/Y/R/B/O NT_022171AC092683989660301RH924642355.80    3AC018892, AC018892, AC074278, AC092683, AC092683
S/G/Y/R/B/O NT_022171AC092683990412461RH924642355.80    3AC018892, AC018892, AC074278, AC092683, AC092683
S/G/Y/R/B/O NT_022171AC092683990655311RH1027672356.23    2 AC092683, AC092683
S/G/Y/R/B/O NT_022171AC017099992563853RH569602356.23  2521.601 AC017099
S/G/Y/R/B/O NT_022171AC017099992563953RH568882356.12  2489.201 AC017099
S/G/Y/R/B/O NT_022171AC017099992628763RH1034452356.23    1 AC017099
S/G/Y/R/B/O NT_022171AC017099993032993RH922772356.50    1 AC017099
S/G/Y/R/B/O NT_022171AC016699993568303RH983002354.70    1 AC016699
S/G/Y/R/B/O NT_022171AC079337993937653RH565502357.71  2522.901 AC079337
S/G/Y/R/B/O NT_022171AC092591995905103RH103362354.32    1 AC092591
S/G/Y/R/B/O NT_022171AC018691996314783          
S/G/Y/R/B/O NT_022171AC112788998167761          
S/G/Y/R/B/O NT_022171AC092675998691453RH7827  25138.00  3AC112788, AL162590, AC092675, AC112788, AL162590
S/G/Y/R/B/O NT_022171AC0926751000005783RH31628  25139.00  1 AC092675
S/G/Y/R/B/O NT_022171AC0101341000448133WI-8825    2498.101 AC010134
S/G/Y/R/B/O NT_022171AC0101341000891673RH31629  25136.00  1 AC010134
S/G/Y/R/B/O NT_022171AC0101341001894273RH988722354.27    1 AC010134
S/G/Y/R/B/O NT_022171AC0101341001909893RH1028152355.41    1 AC010134
S/G/Y/R/B/O NT_022171AC0101341002009313RH457282356.56    2AL137790, AC010134, AL137790
S/G/Y/R/B/O NT_022171AC0648601002187113RH256212355.36    1 AC064860
S/G/Y/R/B/O NT_022171AC0648601002196503RH109282355.25    1 AC064860
S/G/Y/R/B/O NT_022171AC0648601002203573RH460732355.36    1 AC064860
S/G/Y/R/B/O NT_022171AC0648601002782673RH361252354.37    1AC109826, AC064860, AC109826
S/G/Y/R/B/O NT_022171AC0648601002938663RH669022355.36    1AC109826, AC064860, AC109826
S/G/Y/R/B/O NT_022171AC1098261003094881          
S/G/Y/R/B/O NT_022171AC0843771004225533RH564102355.85  2504.401 AC084377
S/G/Y/R/B/O NT_022171AC0843771005102353RH453982354.70    1 AC068040, AC084377
S/G/Y/R/B/O NT_022171AC0190971006328783RH935572355.36    1 AC019097
S/G/Y/R/B/O NT_022171AC1100831007297453          
S/G/Y/R/B/O NT_022171AC0925871007548743RH568682355.36  2520.801 AB017567, AC092002, AC092587
S/G/Y/R/B/O NT_022171AC0925871007548773RH568732355.36  2521.401 AC092002, AC092587
S/G/Y/R/B/O NT_022171AC0925871007633423RH916292356.34    1 AB017567, AC092002, AC092587
S/G/Y/R/B/O NT_022171AC0925871007977513RH562902355.36  2520.301AC079447, AC079447, AC092002, AC092587
S/G/Y/R/B/O NT_022171AC0925871007979663RH8830  25156.00  1AC079447, AC079447, AC092002, AC092587
S/G/Y/R/B/O NT_022171AC0794471009124533RH666982355.36    1 AC079447
S/G/Y/R/B/O NT_022171AC0794471009202913RH932872355.36    1 AC079447
S/G/Y/R/B/O NT_022171AC0794471009608363RH419712354.48    1 AC079447
S/G/Y/R/B/O NT_022171AC0186901009951103RH656732357.21    1 AC018690
S/G/Y/R/B/O NT_022171AC0186901009967313WI-5912    2521.401 AC018690
S/G/Y/R/B/O NT_022171AC0186901010000683RH263182355.36    1  
S/G/Y/R/B/O NT_022171AC0186901010000693RH452002354.81    1 AC018690
S/G/Y/R/B/O NT_022171AC0186901010009083RH364082356.45    1 AC018690
S/G/Y/R/B/O NT_022171AC0186901010012463RH1027892355.36    1 AC018690
S/G/Y/R/B/O NT_022171AC0186901010039733RH360742355.36    1 AC018690
S/G/Y/R/B/O NT_022171AC0186901010061423RH922042356.45    1 AC018690
S/G/Y/R/B/O NT_022171AC0186901010069163RH988762355.36    1 AC018690
S/G/Y/R/B/O NT_022171AC0186901011098613RH567102355.80  2505.701 AC018690
S/G/Y/R/B/O NT_022171AC0186901011099313RH166232356.56    1 AC018690
S/G/Y/R/B/O NT_022171AC0186901011480993RH1044452356.56    1 AC018690


  NT_022171 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_022171AC0186901011484483RH560742356.45  2504.401 AC018690
S/G/Y/R/B/O NT_022171AC0186901011485653RH100842353.83    1 AC018690
S/G/Y/R/B/O NT_022171AC0186901011496453RH259832357.10    1 AC018690
S/G/Y/R/B/O NT_022171AC0186901011519463RH689422355.30    1 AC018690
S/G/Y/R/B/O NT_022171AC0933731012039023          
S/G/Y/R/B/O NT_022171AC0731181012272703          
S/G/Y/R/B/O NT_022171AC0107361013330883RH695752356.02    1 AC010736
S/G/Y/R/B/O NT_022171AC0107361014599523RH675552355.30    1AC114793, AC010736, AC114793
S/G/Y/R/B/O NT_022171AC0107361014702553WI-3781    2509.101AC114793, AC010736, AC114793
S/G/Y/R/B/O NT_022171AC1147931015350211          
S/G/Y/R/B/O NT_022171AC0214081015531111          
S/G/Y/R/B/O NT_022171AC0926671015588943RH128682356.99    1 AC092667
S/G/Y/R/B/O NT_022171AC0926671016166123RH569142355.14  2507.301 AC012357, AC092667
S/G/Y/R/B/O NT_022171AC1047821018556183RH103412355.36    1AC021408, AC021408, AC104782
S/G/Y/R/B/O NT_022171AC0124931019739603RH568272355.14  2507.301 AC012493
S/G/Y/R/B/O NT_022171AC0124931019834313RH169702355.30    1 AC012493
S/G/Y/R/B/O NT_022171AC0124931019834383RH569562356.23  2512.301 AC012493
S/G/Y/R/B/O NT_022171AC0124931019842223RH567782355.47  2511.701 AC012493
S/G/Y/R/B/O NT_022171AC0685381021787613RH48522355.41    1 AC068538
S/G/Y/R/B/O NT_022171AC0928451022391353AFMB299YD5    2520.401 AC092845
S/G/Y/R/B/O NT_022171AC0921681024427613RH566742354.8125197.002520.401 AC092168
S/G/Y/R/B/O NT_022171AC1068911024569313          
S/G/Y/R/B/O NT_022171AC0167381025180313RH567602356.12  2518.301 AC016738
S/G/Y/R/B/O NT_022171AC0167381025432593RH562422355.80  2511.101 AC016738
S/G/Y/R/B/O NT_022171AC0167381025433123RH161982355.36    1 AC016738
S/G/Y/R/B/O NT_022171AC0167381025584183RH451562356.99    1 AC016738
S/G/Y/R/B/O NT_022171AC0167381025586663RH178652356.99    1 AC016738
S/G/Y/R/B/O NT_022171AC0167381025586663RH33138  25190.00  1 AC016738
S/G/Y/R/B/O NT_022171AC0167381025775843RH712602356.88    1 AC016738
S/G/Y/R/B/O NT_022171AC0167381025777623RH37923  25246.00  1 AC016738
S/G/Y/R/B/O NT_022171AC0167381025879883RH562112356.78  2521.301 AB061830, AC016738
S/G/Y/R/B/O NT_022171AC0167381025881293RH564922356.12  2519.901 AB061830, AC016738
S/G/Y/R/B/O NT_022171AC0167381025882073RH571272356.02  2549.501 AB061830, AC016738
S/G/Y/R/B/O NT_022171AC0167381025933603RH168082356.78    1 AC016738
S/G/Y/R/B/O NT_022171AC0167381025943293SGC32211    2511.401 AC016738
S/G/Y/R/B/O NT_022171AC0167381025944173RH122872356.99    1 AC016738
S/G/Y/R/B/O NT_022171AC0167381025959173RH184572356.56    1 AC016738
S/G/Y/R/B/O NT_022171AC0167381025971743WI-12930    2483.701 AC016738
S/G/Y/R/B/O NT_022171AC0167381026012093RH705032356.56    1 AC016738
S/G/Y/R/B/O NT_022171AC0167381026013443RH123252355.47    1 AC016738
S/G/Y/R/B/O NT_022171AC0167381026087003RH983842355.80    1 AC016738
S/G/Y/R/B/O NT_022171AC0137221028166603RH687922356.02    1 AC013722
S/G/Y/R/B/O NT_022171AC0137221028167503RH567862355.8025237.002512.201 AC013722
S/G/Y/R/B/O NT_022171AC0137221028512943RH664682356.23    1 AC013722
S/G/Y/R/B/O NT_022171AC0137221028521493RH166492356.78    1 AC013722
S/G/Y/R/B/O NT_022171AC0137221028561853RH688242355.80    1 AC013722
S/G/Y/R/B/O NT_022171AC0137221028562033RH456742355.30    1 AC013722
S/G/Y/R/B/O NT_022171AC0137221028579763RH285412356.34    1 AC013722
S/G/Y/R/B/O NT_022171AC0137221028585923RH571312356.78  2522.201 AC013722
S/G/Y/R/B/O NT_022171AC0736431028889993RH266052355.41    1 AC073643


  NT_022171 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_022171AC0997971029280653RH167762356.88    1 AC099797
S/G/Y/R/B/O NT_022171AC0997971029294673RH166512356.56    1 AC099797
S/G/Y/R/B/O NT_022171AC0997971029294753RH671812356.99    1 AC099797
S/G/Y/R/B/O NT_022171AC0925701029636133RH568542356.12  2520.201 AC092570
S/G/Y/R/B/O NT_022171AC0925701030033243RH984212356.12    1 AC092570
S/G/Y/R/B/O NT_022171AC0938941031337013RH984842357.93    1 AC093894
S/G/Y/R/B/O NT_022171AC0070051032922893RH569552359.00  2521.401 AC007005
S/G/Y/R/B/O NT_022171AC0070051033571073RH685792358.36    1 AC007005
S/G/Y/R/B/O NT_022171AC0070051033662233RH571392355.2525214.002510.701 AC007005
S/G/Y/R/B/O NT_022171AC0070051033756373RH563232358.46  2522.601 AC007005
S/G/Y/R/B/O NT_022171AC0070051033851483RH30751  25271.00  1 AC007005
S/G/Y/R/B/O NT_022171AC0050351034744193RH680762358.04    1 AC005035
S/G/Y/R/B/O NT_022171AC0050351034761163RH284572371.06    1 AC005035
S/G/Y/R/B/O NT_022171AC0050351034764483NIB1426    2548.501 AC005035
S/G/Y/R/B/O NT_022171AC0050351034765033RH250812358.46    1 AC005035
S/G/Y/R/B/O NT_022171AC0050351034766183RH103102356.02    1 AC005035
S/G/Y/R/B/O NT_022171AC0071651036103313RH570662357.75  2522.601 AC007165
S/G/Y/R/B/O NT_022171AC0072711037541063RH37892  25329.00  1 AC007271, AC079346
S/G/Y/R/B/O NT_022171AC0072711037588083RH570582356.6725327.002521.701 AC007271, AC079346
S/G/Y/R/B/O NT_022171AC0072711037588113RH691112358.36    1 AC007271, AC079346
S/G/Y/R/B/O NT_022171AC0072481038669643WI-4502    2522.801 AC007248, AC079346
S/G/Y/R/B/O NT_022171AC0072481039254273RH682002360.16    1 AC007248, AC079116
S/G/Y/R/B/O NT_022171AC0072481039254843RH1715  25333.00  1 AC007248, AC079116
S/G/Y/R/B/O NT_022171AC0072481039278493RH942652360.16    1 AC007248, AC079116
S/G/Y/R/B/O NT_022171AC0072781041064943RH425492359.41  2515.101 AC007278, AC069485
S/G/Y/R/B/O NT_022171AC0072781041064943RH441  25337.00  1 AC007278, AC069485
S/G/Y/R/B/O NT_022171AC0072391042966823RH681502360.26    1 AC007239, AC090429
S/G/Y/R/B/O NT_022171AC0072391042967033RH804972355.74    1 AC007239, AC090429
S/G/Y/R/B/O NT_022171AC0072391043006083RH986062360.16    1 AC007239, AC090429
S/G/Y/R/B/O NT_022171AC0072511043583643RH694442356.88    1 AC007251, AC090429
S/G/Y/R/B/O NT_022171AC0072511043809483RH687302359.41    1 AC007251, AC090429
S/G/Y/R/B/O NT_022171AC0072511043991273RH941342360.16    1 AC007251, AC090429
S/G/Y/R/B/O NT_022171AC1080511044930913          
S/G/Y/R/B/O NT_022171AC0739871046109663          
S/G/Y/R/B/O NT_022171AC0108811049208113RH29972  25376.00  1 AC010881
S/G/Y/R/B/O NT_022171AC0115931049342443          
S/G/Y/R/B/O NT_022171AC0925681050643933          
S/G/Y/R/B/O NT_022171AC0188801050943273          
S/G/Y/R/B/O NT_022171AC0210151052193523          
S/G/Y/R/B/O NT_022171AC0965481053681493          
S/G/Y/R/B/O NT_022171AC0137271054492423CHLC.GATA88C05    2527.801 AC011673, AC013727, AC021341
S/G/Y/R/B/O NT_022171AC0965541055830123          
S/G/Y/R/B/O NT_022171AC0977231057256953          
S/G/Y/R/B/O NT_022171AC1059261058123143          
S/G/Y/R/B/O NT_022171AC0685351059017583          
S/G/Y/R/B/O NT_022171AC0134021060881623RH285852367.65    1 AC013402
S/G/Y/R/B/O NT_022171AC0134021060946163RH171082366.60    1 AC013402
S/G/Y/R/B/O NT_022171AC0680571063287373RH109032368.54    1 AC068057
S/G/Y/R/B/O NT_022171AC0680571063385133RH259992368.74    1 AC068057
S/G/Y/R/B/O NT_022171AC0187301063818243WI-14662    2486.101 AC018730


  NT_022171 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_022171AC0187301063896073RH562392368.54  2536.501 AC018730
S/G/Y/R/B/O NT_022171AC0187301063896443RH923272368.54    1 AC018730
S/G/Y/R/B/O NT_022171AC0187301064412493RH270442367.72    1 AC018730
S/G/Y/R/B/O NT_022171AC0187301064770403RH38612  25393.00  1 AC018730
S/G/Y/R/B/O NT_022171AC0187301064814693WI-13313    2483.501 AC018730
S/G/Y/R/B/O NT_022171AC0108841066380563RH364642368.54    1 AC010884, AC062005
S/G/Y/R/B/O NT_022171AC1070801066485813          
S/G/Y/R/B/O NT_022171AC1046551066818353WI-14764    2485.101 AC062005, AC104655
S/G/Y/R/B/O NT_022171AC0123601068463953RH1402  25410.00  1 AC012360, AC068362
S/G/Y/R/B/O NT_022171AC0123601068465923RH660222370.36    1 AC012360, AC068362
S/G/Y/R/B/O NT_022171AC0123601068477593SGC34726    2506.001 AC012360, AC068362
S/G/Y/R/B/O NT_022171AC0123601068477593RH571152385.73    1 AC012360, AC068362
S/G/Y/R/B/O NT_022171AC0123601068478493RH684582366.60    1 AC012360, AC068362
S/G/Y/R/B/O NT_022171AC0123601069306033RH107032366.60    1AC108058, AC012360, AC068362, AC108058
S/G/Y/R/B/O NT_022171AC0123601069397963RH477422366.75    1AC108058, AC012360, AC068362, AC108058
S/G/Y/R/B/O NT_022171AC0123601069428763RH7887  25415.00  1AC108058, AC012360, AC108058
S/G/Y/R/B/O NT_022171AC1080581069530231          
S/G/Y/R/B/O NT_022171AC0682731069936693          
S/G/Y/R/B/O NT_022171AC0188021071746853          
S/G/Y/R/B/O NT_022171AC0976501072966783          
S/G/Y/R/B/O NT_022171AC0109781073127843          
S/G/Y/R/B/O NT_022171AC0095051074759433RH683732366.65    1 AC009505
S/G/Y/R/B/O NT_022171AC0095051074848773RH153552364.66  2537.601 AC009505
S/G/Y/R/B/O NT_022171AC0095051074848773RH354  25469.00  1 AC009505
S/G/Y/R/B/O NT_022171AC0095051074955323WI-9900    2532.601 AC009505
S/G/Y/R/B/O NT_022171AC0095051075119513RH494782368.8425478.00  1 AC009505
S/G/Y/R/B/O NT_022171AC0095051075283353WI-4521    2547.001 AC009505
S/G/Y/R/B/O NT_022171AC0095051075438983RH992892370.24    1 AC009505, AC011060
S/G/Y/R/B/O NT_022171AC0188781076598763RH692782366.65    1 AC018878
S/G/Y/R/B/O NT_022171AC0188781076754303RH124282366.65    1AC092106, AC018878, AC092106
S/G/Y/R/B/O NT_022171AC0188781076756533RH700632366.65    1AC092106, AC018878, AC092106
S/G/Y/R/B/O NT_022171AC0188781076760273RH263672368.84    1AC092106, AC018878, AC092106
S/G/Y/R/B/O NT_022171AC0188781077701993RH364602366.75    1AC015643, AC092106, AC015643, AC018878, AC092106
S/G/Y/R/B/O NT_022171AC0188781077702253RH184802366.75    1AC015643, AC092106, AC015643, AC018878, AC092106
S/G/Y/R/B/O NT_022171AC0921061078349381RH611316137.61  6193.603Z85986, Z85986
S/G/Y/R/B/O NT_022171AC0156431078358381          
S/G/Y/R/B/O NT_022171 - RH1032792357.32    0  
S/G/Y/R/B/O NT_022171 - RH14564  25358.00  1AC016723, AC016723
S/G/Y/R/B/O NT_022171 - SGC35015    2489.702AC009238, AC013272, AC009238, AC013272
S/G/Y/R/B/O NT_022171 - RH115162354.32    0  
S/G/Y/R/B/O NT_022171 - WI-4861    2509.100  
S/G/Y/R/B/O NT_022171 - RH115912355.91    1AC004020, AC012307, AC004020, AC012307
S/G/Y/R/B/O NT_022171 - RH180732356.78    0  
S/G/Y/R/B/O NT_022171 - RH366162356.67    0  
S/G/Y/R/B/O NT_022171 - RH464182356.78    0  
S/G/Y/R/B/O NT_022171 - RH469762356.23    0  
S/G/Y/R/B/O NT_022171 - RH561672356.07    1AC021188, AC092507, AC021188, AC021606, AC092507
S/G/Y/R/B/O NT_022171 - RH567752358.1425325.002522.600AC007165, AC007165
S/G/Y/R/B/O NT_022171 - RH657932357.10    0  
S/G/Y/R/B/O NT_022171 - RH668262355.36    0  


  NT_022171 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_022171 - RH670982356.02    0  
S/G/Y/R/B/O NT_022171 - RH686032356.34    2AC004020, AC012307, AC004020, AC012307
S/G/Y/R/B/O NT_022171 - RH697862358.50    0  
S/G/Y/R/B/O NT_022171 - RH924122355.36    0  
S/G/Y/R/B/O NT_022171 - RH930722354.70    2AC004020, AC012307, AC004020, AC012307
S/G/Y/R/B/O NT_022171 - RH981572355.14    0