Chromosome 2 - RH Maps - Single Contig

Chromosome 2 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033005	NT_022221	NT_022139	NT_022270	NT_022194	NT_022327	NT_005334	NT_033008
NT_033000	NT_005214	NT_033002	NT_022227	NT_015926	NT_005204	NT_030589	NT_005367
NT_015120	NT_026239	NT_005389	NT_005399	NT_005375	NT_032985	NT_032982	NT_032996
NT_033007	NT_033006	NT_032984	NT_032999	NT_022354	NT_033004	NT_022184	NT_005322
NT_022143	NT_015805	NT_033003	NT_032992	NT_029235	NT_032994	NT_022300	NT_026970
NT_032987	NT_022171	NT_032997	NT_005429	NT_005224	NT_029895	NT_022240	NT_031762
NT_032990	NT_019306	NT_026982	NT_030595	NT_022222	NT_029927	NT_005079	NT_022135
NT_032991	NT_022140	NT_029911	NT_028068	NT_030590	NT_005058	NT_029926	NT_005129
NT_022172	NT_005273	NT_005435	NT_005151	NT_031761	NT_022154	NT_005343	NT_005332
NT_025652	NT_032998	NT_005265	NT_005031	NT_022339	NT_030600	NT_022197	NT_005483
NT_005062	NT_022155	NT_032995	NT_005190	NT_030603	NT_005417	NT_028103	NT_033001
NT_005037	NT_005229	NT_005370	NT_005034	NT_005078	NT_005486	NT_031748	NT_005337
NT_005403	NT_032986	NT_022115	NT_005414	NT_022315	NT_005120	NT_022173	NT_022388
NT_005416	NT_005472	NT_022250	NT_032981	NT_026250

NT_005120

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005120	AC114814	238765484	1	CHLC.GATA5H02					2	1068.50	1		AC114814
S/G/Y/R/B/O	NT_005120	AC114814	238811607	1	AFMA064ZF9					2	1068.10	1		AC114814
S/G/Y/R/B/O	NT_005120	AC114814	238881488	1	RH10930	2	720.28					1		AC114814
S/G/Y/R/B/O	NT_005120	AC114814	238881505	1	TIGR-A004W19					2	1068.50	1		AC114814
S/G/Y/R/B/O	NT_005120	AC114814	238881505	1	RH56284	2	724.70					1		AC114814
S/G/Y/R/B/O	NT_005120	AC114814	238881519	1	WI-14192					2	1067.90	1		AC114814
S/G/Y/R/B/O	NT_005120	AC114814	238881519	1	RH56691	2	724.70					1		AC114814
S/G/Y/R/B/O	NT_005120	AC010148	238917305	3	RH32644			2	10087.00	2	1067.90	1		AC010148
S/G/Y/R/B/O	NT_005120	AC010148	238917305	3	RH56504	2	724.70					1		AC010148
S/G/Y/R/B/O	NT_005120	AC010148	238983969	3	RH93190	2	731.08					1		AC010148
S/G/Y/R/B/O	NT_005120	AC010148	239068532	3	RH13591	2	730.98					1	AC104394,	AC104394
S/G/Y/R/B/O	NT_005120	AC010148	239110849	3	AFMB333XG9					2	1069.70	1	AC013811, AC104394,	AC010148, AC013811, AC104394
S/G/Y/R/B/O	NT_005120	AC104394	239116232	1
S/G/Y/R/B/O	NT_005120	AC092576	239304357	3	WI-11222					2	1068.70	1		AC092576
S/G/Y/R/B/O	NT_005120	AC107084	239335128	3
S/G/Y/R/B/O	NT_005120	AC093785	239351632	3
S/G/Y/R/B/O	NT_005120	AC012305	239446755	3	WI-4332					2	1069.90	1		AC012305
S/G/Y/R/B/O	NT_005120	AC012305	239573478	3	RH44862	2	736.65					1		AC012305
S/G/Y/R/B/O	NT_005120	AC073989	239624253	3	RH56988	2	736.65			2	1071.50	1		AC073989
S/G/Y/R/B/O	NT_005120	AC064874	239719649	3	RH56480	2	734.44			2	1072.30	1		AC064874
S/G/Y/R/B/O	NT_005120	AC079400	239870169	3	RH57120	2	737.22	2	10077.00	2	1072.00	1		AC079400
S/G/Y/R/B/O	NT_005120	AC079400	239870172	3	RH56676	2	741.25			2	1072.70	1		AC079400
S/G/Y/R/B/O	NT_005120	AC079400	239911364	3	RH91277	2	741.25					1		AC079400
S/G/Y/R/B/O	NT_005120	AC019047	240008225	3	RH48088	2	741.25					1		AC019047
S/G/Y/R/B/O	NT_005120	AC019047	240123465	3	RH102352	2	741.81					1		AC019047
S/G/Y/R/B/O	NT_005120	AC019047	240129878	3	RH67474	2	741.25					1		AC019047
S/G/Y/R/B/O	NT_005120	AC079135	240163576	3	RH65560	2	739.57					1		AC079135, U31468
S/G/Y/R/B/O	NT_005120	AC019068	240260630	3	WI-6437					2	1072.20	1		AC019068
S/G/Y/R/B/O	NT_005120	AC019068	240325086	3	RH4778	2	739.57			2	1075.50	1		AC019068
S/G/Y/R/B/O	NT_005120	AC093915	240348608	3
S/G/Y/R/B/O	NT_005120	AC079611	240597355	3	WI-3425					2	1074.00	1		AC018893, AC079611
S/G/Y/R/B/O	NT_005120	AC084030	240643807	3
S/G/Y/R/B/O	NT_005120	AC011286	240891648	3	RH4677	2	737.73			2	1074.80	1		AC011286
S/G/Y/R/B/O	NT_005120	AC011286	240908330	3	RH65538	2	741.40					1		AC011286
S/G/Y/R/B/O	NT_005120	AC012063	240911401	3
S/G/Y/R/B/O	NT_005120	AC105760	241078198	3	RH56604	2	741.40			2	1073.80	1	AC107079,	AC105760, AC107079
S/G/Y/R/B/O	NT_005120	AC105760	241096693	3	RH56647	2	737.01			2	1074.30	1	AC107079,	AC105760, AC107079
S/G/Y/R/B/O	NT_005120	AC105760	241096735	3	RH11779	2	741.40					1	AC107079,	AC105760, AC107079
S/G/Y/R/B/O	NT_005120	AC105760	241096860	3	RH10245	2	741.40					1	AC107079,	AC105760, AC107079
S/G/Y/R/B/O	NT_005120	AC105760	241098350	3	RH57041	2	739.57			2	1075.10	1	AC107079,	AC105760, AC107079
S/G/Y/R/B/O	NT_005120	AC107079	241111986	1
S/G/Y/R/B/O	NT_005120	AC112715	241203050	1
S/G/Y/R/B/O	NT_005120	AC025895	241321880	2	RH18099	2	739.47					1	AC025933, AC112715,	AC025895, AC025933, AC112715
S/G/Y/R/B/O	NT_005120	AC025895	241333253	2	RH56752	2	737.67			2	1074.00	1	AC025933, AC112715,	AC025895, AC025933, AC112715
S/G/Y/R/B/O	NT_005120	AC112721	241395159	1
S/G/Y/R/B/O	NT_005120	AC025933	241401339	1	RH48977	1	292.43					3	AC013599, AC105272, AL513482,	AC013599, AC025933, AC105272, AL513482, AL590104
S/G/Y/R/B/O	NT_005120	AC025933	241436502	1	RH11073	1	304.65					3	AC013599, AC105272, AL513482,	AC013599, AC025933, AC105272, AL513482, AL590104
S/G/Y/R/B/O	NT_005120	AC025933	241437035	1	RH50078	1	304.86	1	4972.00	1	337.50	2	AC013599, AC105272, AL513482,	AC013599, AC105272, AL513482, AL590104
S/G/Y/R/B/O	NT_005120	AC068266	241568465	1
S/G/Y/R/B/O	NT_005120	AC104667	241622433	1	RH69487	2	741.45					1	AC068266,	AC068266, AC104667

NT_005120 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005120	AC096574	241671248	3	RH56563	2	741.25			2	1072.50	1	AC104667,	AC096574, AC104667
S/G/Y/R/B/O	NT_005120	AC012076	241766569	3	RH36116	2	741.45					1		AC012076
S/G/Y/R/B/O	NT_005120	AC012076	241777777	3	RH36320	2	741.45					1		AC011802, AC012076
S/G/Y/R/B/O	NT_005120	AC012076	241782617	3	RH68594	2	741.40					1		AC011802, AC012076
S/G/Y/R/B/O	NT_005120	AC012076	241790570	3	RH70121	2	741.45					1		AC011802, AC012076
S/G/Y/R/B/O	NT_005120	AC012076	241806525	3	RH57054	2	739.67			2	1073.40	1		AC011802, AC012076
S/G/Y/R/B/O	NT_005120	AC012076	241829987	3	WI-5525					2	1074.00	1		AC011802, AC012076
S/G/Y/R/B/O	NT_005120	AC016776	241959574	3	RH57138	2	741.45			2	1073.80	1		AC016776
S/G/Y/R/B/O	NT_005120	AC016776	241989114	3	RH15445	2	741.25					1		AC016776
S/G/Y/R/B/O	NT_005120	AC016776	242089123	3	RH98248	20	20.20					2	AL109976,	AC016217, AL109976
S/G/Y/R/B/O	NT_005120	AC016776	242090004	3	RH68499	2	741.40					1		AC016776
S/G/Y/R/B/O	NT_005120	AC016776	242091982	3	RH16600	2	741.45					1		AC016776
S/G/Y/R/B/O	NT_005120	AC016776	242092872	3	RH56703	2	741.40	2	10106.00	2	1074.00	1		AC016776
S/G/Y/R/B/O	NT_005120	AC016757	242139083	3	RH10901	2	741.45					1		AC016757
S/G/Y/R/B/O	NT_005120	AC016757	242146909	3	RH57126	2	741.40			2	1074.00	1		AC016757
S/G/Y/R/B/O	NT_005120	AC016757	242216446	3	RH15892	2	741.40					1		AC016757
S/G/Y/R/B/O	NT_005120	AC016757	242218256	3	RH10317	2	741.40					1		AC016757
S/G/Y/R/B/O	NT_005120	AC016757	242225475	3	RH42842			2	10106.00			1		AC016757
S/G/Y/R/B/O	NT_005120	AC016757	242227235	3	RH45648	2	737.67					1		AC016757
S/G/Y/R/B/O	NT_005120	AC016757	242268484	3	RH80091	2	741.40					1		AC016757
S/G/Y/R/B/O	NT_005120	AC016757	242273173	3	RH102402	2	746.29					1		AC016757
S/G/Y/R/B/O	NT_005120	AC016757	242286122	3	RH69252	2	741.40					1		AC016757
S/G/Y/R/B/O	NT_005120	AC012485	242329320	3	RH42798			2	10106.00			1		AC012485
S/G/Y/R/B/O	NT_005120	AC012485	242446760	3	RH65470	2	741.40					1		AC011973, AC012485
S/G/Y/R/B/O	NT_005120	AC016999	242494391	3	RH56327	2	737.67			2	1074.90	1		AC016999
S/G/Y/R/B/O	NT_005120	AC016999	242499750	3	RH56332	2	741.25			2	1073.80	1		AC011973, AC016999
S/G/Y/R/B/O	NT_005120	AC016999	242499770	3	RH56164	2	741.40			2	1074.20	1		AC011973, AC016999
S/G/Y/R/B/O	NT_005120	AC016999	242499793	3	RH35763	2	741.40					1		AC011973, AC016999
S/G/Y/R/B/O	NT_005120	AC016999	242508244	3	RH56983	2	741.40			2	1073.80	1		AC011973, AC016999
S/G/Y/R/B/O	NT_005120	AC016999	242508252	3	RH66317	2	741.25					1		AC011973, AC016999
S/G/Y/R/B/O	NT_005120	AC092619	242551706	3	RH56170	2	741.25			2	1073.80	1		AC092619
S/G/Y/R/B/O	NT_005120	AC113618	242742415	1	RH94075	2	741.45					1		AC113618
S/G/Y/R/B/O	NT_005120	AC113618	243158570	1	RH92117	2	741.25					1		AC113618
S/G/Y/R/B/O	NT_005120	AC113618	243196244	1	RH48659	2	741.25					1		AC113618
S/G/Y/R/B/O	NT_005120	AC073425	242935562	3	WI-932					2	1068.40	1	AC013811,	AC013811, AC073425
S/G/Y/R/B/O	NT_005120	AC013811	242937378	1
S/G/Y/R/B/O	NT_005120	AC023586	242989439	1
S/G/Y/R/B/O	NT_005120		-		RH101841	2	741.45					0
S/G/Y/R/B/O	NT_005120		-		RH48487	2	737.73					0
S/G/Y/R/B/O	NT_005120		-		RH56609	2	741.25			2	1072.70	0	AC022210,	AC022210
S/G/Y/R/B/O	NT_005120		-		RH92284	2	741.40					0
S/G/Y/R/B/O	NT_005120		-		SGC34729					2	1073.20	1	AC114750,	AC114750
S/G/Y/R/B/O	NT_005120		-		RH99211	2	741.45					0