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  Chromosome 2 - RH Maps - Single Contig
 

Chromosome 2 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033005 NT_022221 NT_022139 NT_022270 NT_022194 NT_022327 NT_005334 NT_033008
NT_033000 NT_005214 NT_033002 NT_022227 NT_015926 NT_005204 NT_030589 NT_005367
NT_015120 NT_026239 NT_005389 NT_005399 NT_005375 NT_032985 NT_032982 NT_032996
NT_033007 NT_033006 NT_032984 NT_032999 NT_022354 NT_033004 NT_022184 NT_005322
NT_022143 NT_015805 NT_033003 NT_032992 NT_029235 NT_032994 NT_022300 NT_026970
NT_032987 NT_022171 NT_032997 NT_005429 NT_005224 NT_029895 NT_022240 NT_031762
NT_032990 NT_019306 NT_026982 NT_030595 NT_022222 NT_029927 NT_005079 NT_022135
NT_032991 NT_022140 NT_029911 NT_028068 NT_030590 NT_005058 NT_029926 NT_005129
NT_022172 NT_005273 NT_005435 NT_005151 NT_031761 NT_022154 NT_005343 NT_005332
NT_025652 NT_032998 NT_005265 NT_005031 NT_022339 NT_030600 NT_022197 NT_005483
NT_005062 NT_022155 NT_032995 NT_005190 NT_030603 NT_005417 NT_028103 NT_033001
NT_005037 NT_005229 NT_005370 NT_005034 NT_005078 NT_005486 NT_031748 NT_005337
NT_005403 NT_032986 NT_022115 NT_005414 NT_022315 NT_005120 NT_022173 NT_022388
NT_005416 NT_005472 NT_022250 NT_032981 NT_026250


  NT_005343
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005343AC0191811675417053SGC34110    2822.201 AC019181
S/G/Y/R/B/O NT_005343AC0191811675417053RH566602543.11    1 AC019181
S/G/Y/R/B/O NT_005343AC0191811675417053RH174852544.47    1 AC019181
S/G/Y/R/B/O NT_005343AC0191811675811433RH688432544.14    1 AC019181
S/G/Y/R/B/O NT_005343AC0191811676440323RH676532544.47    1 AC019181, AC116626
S/G/Y/R/B/O NT_005343AC0926551677215783          
S/G/Y/R/B/O NT_005343AC0191971677513363RH1039572542.95    1 AC019197
S/G/Y/R/B/O NT_005343AC0191971677553503RH461122543.82    1 AC019197
S/G/Y/R/B/O NT_005343AC0134631679540673RH179072544.47    1 AC013463
S/G/Y/R/B/O NT_005343AC0134631680479493WI-15259    2822.201 AC013463, AC016740
S/G/Y/R/B/O NT_005343AC0134631680479493RH568992543.00    1 AC013463, AC016740
S/G/Y/R/B/O NT_005343AC0134381680663203          
S/G/Y/R/B/O NT_005343AC0113031682463873RH570752545.42  2822.401 AC011303, AF327246
S/G/Y/R/B/O NT_005343AC0113031682466923RH562712546.58  2822.401 AC011303, AF327246
S/G/Y/R/B/O NT_005343AC0113031682480153RH458142544.65    1 AC011303, AF327246
S/G/Y/R/B/O NT_005343AC0113031682494063RH473772544.80    1 AC011303, AF327246
S/G/Y/R/B/O NT_005343AC0113031682605913D2S111    2824.401 AC011303
S/G/Y/R/B/O NT_005343AC1080311683169213          
S/G/Y/R/B/O NT_005343AC0191401685430583SGC31840    2825.901 AC019140
S/G/Y/R/B/O NT_005343AC0191401685431113RH462512544.33    1 AC019140
S/G/Y/R/B/O NT_005343AC0191401685443733RH265272544.47    1 AC019140
S/G/Y/R/B/O NT_005343AC0094951686048013RH256572544.69    1 AC009495, Y10345
S/G/Y/R/B/O NT_005343AC0094951686434813RH568222544.58    1 AC009495
S/G/Y/R/B/O NT_005343AC0094951686434813WI-16907    2902.001 AC009495
S/G/Y/R/B/O NT_005343AC0112411687150843RH163162544.47    1 AC011241
S/G/Y/R/B/O NT_005343AC0112411687257143RH678082544.69    1 AC011241
S/G/Y/R/B/O NT_005343AC0101271688460293RH569502556.53    1 AC010127, AC021673
S/G/Y/R/B/O NT_005343AC0101271688460293WI-12975    2899.901 AC010127, AC021673
S/G/Y/R/B/O NT_005343AC0101271688476113RH258762542.74    1 AC010127, AC021673
S/G/Y/R/B/O NT_005343AC0101271688578783RH479542544.47    2AP002375, AC021673, AP002375
S/G/Y/R/B/O NT_005343AC0101271689191443RH922002544.33    2AP002375, AC010127, AC021673, AP002375
S/G/Y/R/B/O NT_005343AC1070821690520693RH8814  113372.00  2AP001199, AC107082, AP001199
S/G/Y/R/B/O NT_005343AC1081461691234593RH563082554.98    1 AC108146
S/G/Y/R/B/O NT_005343AC1081461691234593WI-13055    2899.301 AC108146
S/G/Y/R/B/O NT_005343AC0741011692605143RH264422546.17    1 AC074101
S/G/Y/R/B/O NT_005343AC0925831693447503          
S/G/Y/R/B/O NT_005343AC1044091694981093          
S/G/Y/R/B/O NT_005343AC1040691695848563          
S/G/Y/R/B/O NT_005343AC0930401697379623          
S/G/Y/R/B/O NT_005343AC0926011698721393CHLC.GATA42D08    2830.701 AC092601
S/G/Y/R/B/O NT_005343AC0926011698721493CHLC.GATA71B02    2830.701 AC092601
S/G/Y/R/B/O NT_005343AC0108361699363201          
S/G/Y/R/B/O NT_005343AC0224211699434851          
S/G/Y/R/B/O NT_005343AC1084941700008091D2S399    2828.501AC010836, AC010836, AC108494
S/G/Y/R/B/O NT_005343AC1084941700008091RH137192550.67    1AC010836, AC010836, AC108494
S/G/Y/R/B/O NT_005343AC0936841701186943RH653492552.59    1AC022421, AC108494, AC022421, AC093684, AC108494
S/G/Y/R/B/O NT_005343AC0936841701270333RH98362550.67    1AC022421, AC108494, AC022421, AC093684, AC108494
S/G/Y/R/B/O NT_005343AC0730501701716993          
S/G/Y/R/B/O NT_005343AC1060491703052853          
S/G/Y/R/B/O NT_005343AC0743631703540273          


  NT_005343 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005343AC0170701706187363RH569352554.94    1 AC017070
S/G/Y/R/B/O NT_005343AC0170701706187363WI-14612    2890.001 AC017070
S/G/Y/R/B/O NT_005343AC0170701706190363RH983232550.37    1 AC017070
S/G/Y/R/B/O NT_005343AC0170701706301013RH279192555.09    1 AC017070
S/G/Y/R/B/O NT_005343AC1052551706522943          
S/G/Y/R/B/O NT_005343AC0167231706792513RH562552555.09    1 AC016723
S/G/Y/R/B/O NT_005343AC0167231706792513RH14564  25358.002898.601 AC016723
S/G/Y/R/B/O NT_005343AC0167231708227633RH990722555.09    1 AC016723
S/G/Y/R/B/O NT_005343AC0167231708238343RH684272550.37    1 AC016723
S/G/Y/R/B/O NT_005343AC0167231708279433RH562192554.8727702.00  1 AC016723
S/G/Y/R/B/O NT_005343AC0167231708279433SGC32064    2889.701 AC016723
S/G/Y/R/B/O NT_005343AC0167231708280923RH116542554.98    1 AC016723
S/G/Y/R/B/O NT_005343AC0170691708545433          
S/G/Y/R/B/O NT_005343AC0679401710988773RH279182553.29    1 AC067940
S/G/Y/R/B/O NT_005343AC0679401711063703RH694632550.37    1 AC067940
S/G/Y/R/B/O NT_005343AC0843711712097573RH1041002551.78    1 AC018932, AC084371
S/G/Y/R/B/O NT_005343AC0190861713266193WI-3286    2844.701 AC018932, AC019086
S/G/Y/R/B/O NT_005343AC0190861713442293WI-3728    2835.601 AC018932, AC019086
S/G/Y/R/B/O NT_005343AC0974531714956823          
S/G/Y/R/B/O NT_005343AC0094751716385703RH911482556.53    1 AC009475
S/G/Y/R/B/O NT_005343AC0094751716385893RH269982555.62    1 AC009475
S/G/Y/R/B/O NT_005343AC0094751716386263RH368882556.58    1 AC009475
S/G/Y/R/B/O NT_005343AC0094751716388833RH569282553.63  2834.301 AC009475
S/G/Y/R/B/O NT_005343AC0094751716405743RH166662554.24    1 AC009475
S/G/Y/R/B/O NT_005343AC0094751716413963RH568892554.45  2834.301 AC009475
S/G/Y/R/B/O NT_005343AC0094751716414503RH8906  27700.00  1 AC009475
S/G/Y/R/B/O NT_005343AC0094751716428733RH168272554.24    1 AC009475
S/G/Y/R/B/O NT_005343AC0094751716428813RH102062554.03    1 AC009475
S/G/Y/R/B/O NT_005343AC0094751716433063RH682902554.24    1 AC009475
S/G/Y/R/B/O NT_005343AC0094751716434253RH358532556.53    1 AC009475
S/G/Y/R/B/O NT_005343AC0094751716571543CHLC.GATA71D01    2890.701 AC009475
S/G/Y/R/B/O NT_005343AC0094751716571573CHLC.GATA31C11    2891.001 AC009475
S/G/Y/R/B/O NT_005343AC0094751716850753RH184672554.03    1 AC009475
S/G/Y/R/B/O NT_005343AC0094751716954913WI-10848    2840.901 AC009475
S/G/Y/R/B/O NT_005343AC0691371717147553RH942012554.03    1 AC069137
S/G/Y/R/B/O NT_005343AC0691371717333113RH8791  27705.00  1 AC023976, AC069137
S/G/Y/R/B/O NT_005343AC0691371717867353RH986612556.53    1 AC023976, AC069137
S/G/Y/R/B/O NT_005343AC0937231718076783          
S/G/Y/R/B/O NT_005343AC0081771718926453RH667282555.15    1 AC008177, AC023976
S/G/Y/R/B/O NT_005343AC0075561719956233RH451392555.19    1 AC007556
S/G/Y/R/B/O NT_005343AC0075561719956883RH674132555.83    1 AC007556
S/G/Y/R/B/O NT_005343AC0075561719968513RH571482557.65    1 AC007556, AF064073
S/G/Y/R/B/O NT_005343AC0075561719968513WI-17537    2891.801 AC007556, AF064073
S/G/Y/R/B/O NT_005343AC0081781721692513RH8799  27717.00  1 AC008178, AC062019
S/G/Y/R/B/O NT_005343AC1107801722912883WI-3276    2891.701 AC110780
S/G/Y/R/B/O NT_005343AC0938991723680473WI-4121    2894.201 AC093899
S/G/Y/R/B/O NT_005343AC0938991723783033RH657122558.33    1 AC093899
S/G/Y/R/B/O NT_005343AC0938991723982593RH14452  27738.002839.702AC016772, AC016772, AC093899
S/G/Y/R/B/O NT_005343AC0938991723982593RH561912567.18    2AC016772, AC016772, AC093899
S/G/Y/R/B/O NT_005343AC0938991724788133RH369132558.33    1AC016772, AC016772, AC093899


  NT_005343 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005343AC0938991724789343RH1293  27758.00  1AC016772, AC016772, AC093899
S/G/Y/R/B/O NT_005343AC0167721724962153WI-11413    2841.201 AC016772
S/G/Y/R/B/O NT_005343AC0167721724962153RH567562566.87    1 AC016772
S/G/Y/R/B/O NT_005343AC0167721725058553RH567732558.12    1 AC016772
S/G/Y/R/B/O NT_005343AC0167721725058553RH33000  27886.002895.101 AC016772
S/G/Y/R/B/O NT_005343AC0167721725059983RH270832557.11    1 AC016772
S/G/Y/R/B/O NT_005343AC0167721725090603RH570842557.11    1 AC016772
S/G/Y/R/B/O NT_005343AC0167721725090603SGC32051    2896.901 AC016772
S/G/Y/R/B/O NT_005343AC0167721725094063RH981822567.18    1 AC016772
S/G/Y/R/B/O NT_005343AC0167721725095613WI-17939    2841.301 AC016772
S/G/Y/R/B/O NT_005343AC0167721725095613RH564612566.62    1 AC016772
S/G/Y/R/B/O NT_005343AC0167721725108023RH419432559.55    1 AC016772
S/G/Y/R/B/O NT_005343AC0167721725527693RH562032556.95    1 AC016772
S/G/Y/R/B/O NT_005343AC0167721725527693SGC31767    2900.201 AC016772
S/G/Y/R/B/O NT_005343AC0167721725528483RH258012557.11    1 AC016772
S/G/Y/R/B/O NT_005343AC0099671725794073RH168432567.18    1 AC009967
S/G/Y/R/B/O NT_005343AC0099671725794833RH109432567.12    1 AC009967
S/G/Y/R/B/O NT_005343AC0099671726201493RH362432557.11    1 AC009967
S/G/Y/R/B/O NT_005343AC0099671726266823RH568352558.54    1 AC009967
S/G/Y/R/B/O NT_005343AC0099671726266823WI-6497    2893.001 AC009967
S/G/Y/R/B/O NT_005343AC0099671726802393RH1853  27900.00  1 AC009967, X97869
S/G/Y/R/B/O NT_005343AC0791511727465093          
S/G/Y/R/B/O NT_005343AC0926411727789563WI-13383    2843.501 AC092641
S/G/Y/R/B/O NT_005343AC0926411727789563RH568052566.62    1 AC092641
S/G/Y/R/B/O NT_005343AC0926411729066643RH565972558.60    1AC079122, AC079122, AC092641
S/G/Y/R/B/O NT_005343AC0926411729066643RH33605  27905.002891.701AC079122, AC079122, AC092641
S/G/Y/R/B/O NT_005343AC0926411729066673RH709362567.18    1AC079122, AC079122, AC092641
S/G/Y/R/B/O NT_005343AC0926411729505513RH453612566.98    1AC079122, AC079122, AC092641
S/G/Y/R/B/O NT_005343AC0926411729515743RH935982566.98    1AC079122, AC079122, AC092641
S/G/Y/R/B/O NT_005343AC0926411729521673SGC38024    2845.601AC079122, AC079122, AC092641
S/G/Y/R/B/O NT_005343AC0926411729521673RH564542566.72    1AC079122, AC079122, AC092641
S/G/Y/R/B/O NT_005343AC0791221729939881          
S/G/Y/R/B/O NT_005343 - RH162592544.47    0AC019197, AC019197
S/G/Y/R/B/O NT_005343 - RH368742556.58    1AC025691, AC099791, AC025691, AC099791
S/G/Y/R/B/O NT_005343 - RH449462546.61    0  
S/G/Y/R/B/O NT_005343 - RH483602554.55    0  
S/G/Y/R/B/O NT_005343 - RH696642556.53    0AL356390, AL356390, AL592304
S/G/Y/R/B/O NT_005343 - RH930572554.24    0