Chromosome 1 - RH Maps - Single Contig

Chromosome 1 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_029865

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_029865	AC026025	60957444	1	RH31571			1	3062.00			2	AC096534,	AC026025, AC096534, AL390054
S/G/Y/R/B/O	NT_029865	AL445432	60993015	3
S/G/Y/R/B/O	NT_029865	AC096947	61008289	3	RH68826	1	171.13					1		AC096947
S/G/Y/R/B/O	NT_029865	AC096947	61014437	3	RH92747	1	169.92					1		AC096947, AL356112
S/G/Y/R/B/O	NT_029865	AC096947	61023349	3	RH49229	1	171.32					1		AC096947
S/G/Y/R/B/O	NT_029865	AC096947	61028971	3	RH64776	1	169.92					1		AC096947, AL356112
S/G/Y/R/B/O	NT_029865	AC096947	61034447	3	RH50353	1	171.13	1	3051.00	1	200.50	1		AC096947, AL356112
S/G/Y/R/B/O	NT_029865	AC096947	61034556	3	RH16390	1	169.82					1		AC096947, AL356112
S/G/Y/R/B/O	NT_029865	AC096947	61045642	3	RH36017	1	171.23					1		AC096947, AL356112
S/G/Y/R/B/O	NT_029865	AC096947	61046408	3	RH64321	1	169.82					1		AC096947, AL356112
S/G/Y/R/B/O	NT_029865	AC096947	61046408	3	WI-14257					1	194.70	1		AC096947, AL356112
S/G/Y/R/B/O	NT_029865	AC096947	61046439	3	RH49883	1	169.82			1	200.60	1		AC096947, AL356112
S/G/Y/R/B/O	NT_029865	AC096947	61052345	3	RH80440	1	167.71					1		AC096947, AL356112
S/G/Y/R/B/O	NT_029865	AC096947	61092765	3	RH45701	1	165.46					1		AC096947, AL356112
S/G/Y/R/B/O	NT_029865	AC092784	61144131	3	RH50438	1	171.13	1	3057.00	1	200.50	1		AC092784, AL356112
S/G/Y/R/B/O	NT_029865	AC092784	61144264	3	RH35947	1	156.58					1		AC092784, AL356112
S/G/Y/R/B/O	NT_029865	AC092784	61167094	3	RH14308			1	3062.00			1	AL445198,	AC092784, AL445198
S/G/Y/R/B/O	NT_029865	AC092784	61205049	3	WI-3791					1	200.60	1	AL445198,	AC092784, AL445198
S/G/Y/R/B/O	NT_029865	AL445198	61212947	3
S/G/Y/R/B/O	NT_029865	AL096888	61280464	3	RH31572			1	3071.00			1		AL096888
S/G/Y/R/B/O	NT_029865	AL096888	61280862	3	RH33050			1	3067.00	1	196.30	1		AL096888
S/G/Y/R/B/O	NT_029865	AL096888	61280862	3	RH49758	1	165.46					1		AL096888
S/G/Y/R/B/O	NT_029865	AL096888	61280993	3	RH44635	1	165.46					1		AL096888
S/G/Y/R/B/O	NT_029865	AL096888	61328183	3	AFMB346ZB5					1	200.50	1		AL096888
S/G/Y/R/B/O	NT_029865	AL096888	61344725	3	RH11896	1	151.08					1		AL096888
S/G/Y/R/B/O	NT_029865	AL096888	61344914	3	RH64203	1	169.92			1	196.30	1		AL096888
S/G/Y/R/B/O	NT_029865	AL096888	61345193	3	RH67803	1	171.13					1		AL096888
S/G/Y/R/B/O	NT_029865	AL096888	61346525	3	RH47570	1	171.13					1		AL096888
S/G/Y/R/B/O	NT_029865	AL096888	61348214	3	RH102940	1	169.82					1		AL096888
S/G/Y/R/B/O	NT_029865	AL096888	61351343	3	RH75756	1	169.92					1		AL096888
S/G/Y/R/B/O	NT_029865	AL590393	61355036	3
S/G/Y/R/B/O	NT_029865	AC099791	61395827	3	RH13258	1	172.55	1	3099.00			1		AC099791
S/G/Y/R/B/O	NT_029865	AC099791	61570347	3	RH63929	1	172.16			1	198.50	1	AC025691,	AC025691, AC099791
S/G/Y/R/B/O	NT_029865	AC099791	61570385	3	RH36874	2	556.58					1	AC025691,	AC025691, AC099791
S/G/Y/R/B/O	NT_029865	AC099791	61570756	3	RH92344	1	172.55					1	AC025691,	AC025691, AC099791
S/G/Y/R/B/O	NT_029865	AC099791	61583487	3	RH36211	1	172.55					1	AC025691, AC097064,	AC025691, AC097064, AC099791
S/G/Y/R/B/O	NT_029865	AC099791	61586236	3	RH48842	1	165.38					1	AC025691, AC097064,	AC025691, AC097064, AC099791
S/G/Y/R/B/O	NT_029865	AC097064	61655216	1	RH103735	1	172.55					1	AC025691,	AC025691, AC097064, AL357145
S/G/Y/R/B/O	NT_029865	AC025691	61638320	1
S/G/Y/R/B/O	NT_029865	AL449143	61754969	3	RH49843	1	173.27			1	200.60	1	AC097064,	AC097064, AL449143
S/G/Y/R/B/O	NT_029865	AL353802	61844365	3	RH67368	1	172.55					1		AL353802
S/G/Y/R/B/O	NT_029865	AL353802	61903870	3	RH66209	1	165.46					1		AL353802
S/G/Y/R/B/O	NT_029865	AL590374	61925449	3
S/G/Y/R/B/O	NT_029865	AL136458	61941403	3	RH36566	1	167.81					1		AC090170, AL136458
S/G/Y/R/B/O	NT_029865	AL136458	61983653	3	RH13400	1	173.06	1	3133.00			1		AC090170, AL136458
S/G/Y/R/B/O	NT_029865	AL136458	62025898	3	D1S230					1	197.90	1		AC044779, AC090170, AL136458
S/G/Y/R/B/O	NT_029865	AL136458	62041964	3	RH103630	1	171.13					1		AC044779, AC090170, AL136458
S/G/Y/R/B/O	NT_029865	AL136458	62052488	3	RH94138	1	172.55					1		AC044779, AC090170, AL136458
S/G/Y/R/B/O	NT_029865	AL162739	62125441	3	RH69659	1	171.42					1		AC044779, AL162739
S/G/Y/R/B/O	NT_029865	AL139343	62141946	3

NT_029865 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_029865	AC096946	62341147	1	RH78360	1	171.54					1		AC096946, AL391257
S/G/Y/R/B/O	NT_029865	AL451044	62344565	3	RH64736	1	171.13					1	AC096946,	AC096946, AL391257, AL451044
S/G/Y/R/B/O	NT_029865	AL451044	62367285	3	RH36075	1	172.55					1		AL391257, AL451044
S/G/Y/R/B/O	NT_029865	AL138847	62473657	3	RH49866	1	173.06			1	200.60	1		AL138847
S/G/Y/R/B/O	NT_029865	AL138847	62473657	3	RH12728	1	165.46					1		AL138847
S/G/Y/R/B/O	NT_029865	AL138847	62473778	3	RH16946	1	172.55					1		AL138847
S/G/Y/R/B/O	NT_029865	AL138847	62479587	3	RH16676	1	171.13					1		AL138847
S/G/Y/R/B/O	NT_029865	AL138847	62487474	3	RH8835			1	3137.00			1		AL138847
S/G/Y/R/B/O	NT_029865	AL138847	62495609	3	RH64421	1	169.82			1	200.50	1		AL138847
S/G/Y/R/B/O	NT_029865	AL138847	62495718	3	RH46994	1	165.46					1		AL138847
S/G/Y/R/B/O	NT_029865	AC103923	62649880	3	WI-4539					1	200.10	2	AC016677, AC022517,	AC016677, AC021618, AC022517, AC103923
S/G/Y/R/B/O	NT_029865	AL391842	62719463	1
S/G/Y/R/B/O	NT_029865	AC099794	62750866	3	RH31573			1	3152.00			1		AC099794
S/G/Y/R/B/O	NT_029865	AC099794	62754222	3	RH64422	1	171.13	1	2968.00	1	200.70	1	AL391842,	AC099794, AL391842
S/G/Y/R/B/O	NT_029865	AL162400	62976590	3	RH30678			1	3178.00			1		AC026144, AL162400
S/G/Y/R/B/O	NT_029865	AC096543	63112393	3	RH104163	1	171.54					1		AC096543
S/G/Y/R/B/O	NT_029865	AL138935	63152630	3
S/G/Y/R/B/O	NT_029865	AL049636	63162092	3
S/G/Y/R/B/O	NT_029865	AL592218	63326261	3	RH50649	1	172.57	1	3000.00	1	199.30	1	AL591362,	AL591362, AL592218
S/G/Y/R/B/O	NT_029865	AL592218	63326261	3	RH68218	1	172.55					1	AL591362,	AL591362, AL592218
S/G/Y/R/B/O	NT_029865	AL592218	63330240	3	RH91667	1	165.38					1	AL591362,	AL591362, AL592218
S/G/Y/R/B/O	NT_029865	AL591362	63342047	1	RH49820	1	172.57					1		AL591362
S/G/Y/R/B/O	NT_029865	AL591362	63342047	1	WI-13445					1	192.50	1		AL591362
S/G/Y/R/B/O	NT_029865	AL109925	63458227	3	RH49953	1	172.16			1	200.70	1	AL591362,	AC027520, AL109925, AL591362
S/G/Y/R/B/O	NT_029865	AL109925	63545462	3	RH50576	1	171.74			1	200.70	1		AC027520, AL109925
S/G/Y/R/B/O	NT_029865	AL109925	63545553	3	RH17744	1	173.06					1		AC027520, AL109925
S/G/Y/R/B/O	NT_029865	AL512663	63563391	3
S/G/Y/R/B/O	NT_029865	AL161742	63636562	3
S/G/Y/R/B/O	NT_029865	AL353713	63762369	3	D1S515					1	200.60	1		AC025544, AL353713, AL356914
S/G/Y/R/B/O	NT_029865	AL353713	63762369	3	RH698			1	3019.00			1		AC025544, AL353713, AL356914
S/G/Y/R/B/O	NT_029865	AL353713	63783745	3	RH64612	1	172.14					1		AC025544, AL353713
S/G/Y/R/B/O	NT_029865	AL353713	63797680	3	RH47810	1	165.56					1	AL359769,	AC025544, AL353713, AL359769
S/G/Y/R/B/O	NT_029865	AL359769	63836174	1	SGC33176					1	200.70	1	AC018773,	AC018773, AL359769
S/G/Y/R/B/O	NT_029865	AL359769	63836174	1	RH64432	1	166.89					1	AC018773,	AC018773, AL359769
S/G/Y/R/B/O	NT_029865	AC018773	63893065	1	RH31574			1	3201.00			1	AL359769,	AC018773, AL359769
S/G/Y/R/B/O	NT_029865	AL138793	63974585	3
S/G/Y/R/B/O	NT_029865	AL445205	63997532	3	RH31577			1	3215.00			1		AL445205
S/G/Y/R/B/O	NT_029865	AL445205	64068454	3	RH2097			1	3208.00			1		AL445205
S/G/Y/R/B/O	NT_029865	AL445205	64087398	3	RH31576			1	3224.00			1		AL445205
S/G/Y/R/B/O	NT_029865	AL161916	64133758	3	RH102555	1	171.54					1		AL161916
S/G/Y/R/B/O	NT_029865	AL161916	64135459	3	RH17866	1	171.13					1		AL161916
S/G/Y/R/B/O	NT_029865	AL592184	64200313	3
S/G/Y/R/B/O	NT_029865	AL513044	64220564	3
S/G/Y/R/B/O	NT_029865	AL355515	64426519	3	RH47089	1	165.66					1		AC012245, AC061976, AL355515
S/G/Y/R/B/O	NT_029865	AL355515	64426575	3	RH67084	1	173.27					1		AC012245, AC061976, AL355515
S/G/Y/R/B/O	NT_029865	AL590405	64553402	3	RH71157	1	174.01					1		AL590405
S/G/Y/R/B/O	NT_029865	AC099678	64565667	3	RH68442	1	173.90					1		AC099678
S/G/Y/R/B/O	NT_029865	AC099678	64582288	3	RH102643	1	173.90					1		AC099678
S/G/Y/R/B/O	NT_029865	AC099678	64653452	3	RH31579			1	3292.00			1	AC093427,	AC093427, AC099678
S/G/Y/R/B/O	NT_029865	AC093427	64720522	3	RH48742	1	174.38					1		AC093427, AL354878

NT_029865 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_029865	AC093427	64720588	3	RH66126	1	174.38					1		AC093427, AL354878
S/G/Y/R/B/O	NT_029865	AC093427	64722497	3	RH78098	1	174.74					1		AC093427, AL354878
S/G/Y/R/B/O	NT_029865	AC093427	64722828	3	RH66370	1	174.11					1		AC093427, AL354878
S/G/Y/R/B/O	NT_029865	AC093427	64723916	3	RH70267	1	173.90					1		AC093427, AL354878
S/G/Y/R/B/O	NT_029865	AL590436	64785335	3
S/G/Y/R/B/O	NT_029865	AL606517	64864738	3	RH65717	1	165.76					1	AC025866,	AC025866, AL606517
S/G/Y/R/B/O	NT_029865	AC025866	64879082	1
S/G/Y/R/B/O	NT_029865	AL357078	64895966	1	RH66679	1	174.32					1	AC025866,	AC025866, AL357078
S/G/Y/R/B/O	NT_029865	AL357078	64900685	1	RH14632			1	3258.00			1	AC025866,	AC025866, AL357078
S/G/Y/R/B/O	NT_029865	AL357078	64931879	1	RH49253	1	174.38					1	AC025866,	AC025866, AL357078
S/G/Y/R/B/O	NT_029865	AL357078	64937928	1	RH75660	1	174.38					1	AC025866,	AC025866, AL357078
S/G/Y/R/B/O	NT_029865	AL357078	64940790	1	RH37845			1	3258.00			1	AC025866, AC025866,	AC025866, AC025866, AL357078
S/G/Y/R/B/O	NT_029865	AL357078	64940906	1	RH67139	1	173.90					1	AC025866,	AC025866, AL357078
S/G/Y/R/B/O	NT_029865	AL357078	64941341	1	RH45439	1	174.74					1	AC025866,	AC025866, AL357078
S/G/Y/R/B/O	NT_029865	AC099680	65107413	3	RH64747	1	174.74					1		AC099680
S/G/Y/R/B/O	NT_029865	AL356212	65118759	3	RH67500	1	174.01					1		AL356212
S/G/Y/R/B/O	NT_029865	AL356212	65120229	3	SGC34423					1	200.70	2	AC008784, AC025777, AC035146,	AC008784, AC025777, AC035146, AL356212
S/G/Y/R/B/O	NT_029865	AL356212	65120229	3	RH64395	1	152.02					2	AC008784, AC025777, AC035146,	AC008784, AC025777, AC035146, AL356212
S/G/Y/R/B/O	NT_029865	AL356212	65121350	3	RH63822	1	175.76			1	202.40	1		AL356212
S/G/Y/R/B/O	NT_029865	AL356212	65121372	3	RH17192	1	174.74					1		AL356212
S/G/Y/R/B/O	NT_029865	AL139294	65156029	3	RH79652	1	174.42					1		AL139294
S/G/Y/R/B/O	NT_029865		-		RH104567	1	174.74					0
S/G/Y/R/B/O	NT_029865		-		RH14124			1	3135.00			3	AC015818, AC019349, AC022596, AC069486, AC105208, AL353997,	AC015818, AC019349, AC020664, AC021094, AC022596, AC023401, AC027266, AC069486, AC105208, AF061809, AL353997
S/G/Y/R/B/O	NT_029865		-		SGC31372					1	199.30	1	AC080177, AL606762,	AC080177, AL606762
S/G/Y/R/B/O	NT_029865		-		RH91887	1	174.38					0	AL590405,	AL590405
S/G/Y/R/B/O	NT_029865		-		RH14402			1	3062.00			1	AC016857, AC096534, AL355795,	AC016857, AC096534, AL355795
S/G/Y/R/B/O	NT_029865		-		WI-5588					1	199.30	1	AC027052, AL109845, AL365187,	AC027052, AL109845, AL359879, AL365187
S/G/Y/R/B/O	NT_029865		-		RH14520			1	2889.00			1	AL445928,	AL355995, AL445928
S/G/Y/R/B/O	NT_029865		-		WI-18101					1	199.30	1	AL713859,	AL713859
S/G/Y/R/B/O	NT_029865		-		RH32320			1	3135.00			1	AL138795,	AC026050, AL138795, AL359875, AL359883, AL365403
S/G/Y/R/B/O	NT_029865		-		D1S220					1	199.30	1	AL136985,	AL136985
S/G/Y/R/B/O	NT_029865		-		RH32611			1	2915.00			1	AC055781, AL117350,	AC055781, AL117350
S/G/Y/R/B/O	NT_029865		-		RH32958			1	2900.00			1	AL121990,	AC016301, AL121990
S/G/Y/R/B/O	NT_029865		-		RH33466			1	2906.00			1	AC055781, AL160004,	AC055781, AL160004
S/G/Y/R/B/O	NT_029865		-		RH37922			1	3241.00			0
S/G/Y/R/B/O	NT_029865		-		RH38217			1	2900.00			1	AL354983,	AL354983
S/G/Y/R/B/O	NT_029865		-		RH802			1	3057.00			1	AC016857, AC058796, AC099792, AL355795,	AC016857, AC058796, AC099792, AL355795