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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_028053
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028053AL670471256711153RH50594192.73  191.701 AL670471
S/G/Y/R/B/O NT_028053AL353622257469753RH102636195.57    1 AL353622
S/G/Y/R/B/O NT_028053AL353622258004713RH9984195.57    1AC025860, AC027421, AC025860, AC027421, AL353622
S/G/Y/R/B/O NT_028053AL353622258004803RH12617195.57    1AC027421, AC027421, AL353622
S/G/Y/R/B/O NT_028053AL353622258005393RH10615195.40    1AC025860, AC025860
S/G/Y/R/B/O NT_028053AL353622258011873RH25981192.86    1AC025860, AC027421, AC025860, AC027421, AL353622
S/G/Y/R/B/O NT_028053AL353622258014703RH63931192.73  191.701AC025860, AC027421, AC025860, AC027421, AL353622
S/G/Y/R/B/O NT_028053AL353622258015193RH9974195.57    1AC025860, AC027421, AC025860, AC027421, AL353622
S/G/Y/R/B/O NT_028053AL353622258431933RH65830188.92    1AC025860, AC027421, AC025860, AC027421, AL353622
S/G/Y/R/B/O NT_028053AL353622258448963RH64792192.73    1 AL353622
S/G/Y/R/B/O NT_028053AC025860258785661          
S/G/Y/R/B/O NT_028053AC027421258809031RH11794195.50    1AC025860, AC025860, AC027421, AL353354
S/G/Y/R/B/O NT_028053AC027421258813771RH64556195.46    1AC025860, AC025860, AC027421, AL353354
S/G/Y/R/B/O NT_028053AC027421258976191RH68263195.57    1AC025860, AC025860, AC027421, AL353354
S/G/Y/R/B/O NT_028053AL137792259236053RH104513195.57    1AC025860, AC027421, AC025860, AC027421, AL137792, AL353354
S/G/Y/R/B/O NT_028053AL137792259268113RH68225187.83    1AC027421, AC027421, AL137792, AL353354
S/G/Y/R/B/O NT_028053AL137792259270313RH93431195.57    1AC027421, AC027421, AL137792, AL353354
S/G/Y/R/B/O NT_028053AL137792259270653RH25864188.92    1AC027421, AC027421, AL137792, AL353354
S/G/Y/R/B/O NT_028053AL137792259785513RH2532911271.52    2AP001992, AC013405, AL137792, AL353354, AL358572, AP001992
S/G/Y/R/B/O NT_028053AL137792259787013RH2010  15958.00  2AP001992, AC013405, AL137792, AL353354, AL358572, AP001992
S/G/Y/R/B/O NT_028053AL137792259790263RH5220811271.52  11371.602AP001992, AL137792, AL353354, AL358572, AP001992
S/G/Y/R/B/O NT_028053AL137792259996663RH67549195.57    1 AL137792, AL353354, AL358572
S/G/Y/R/B/O NT_028053AL137792259997123RH18216192.73    1 AL137792, AL353354, AL358572
S/G/Y/R/B/O NT_028053AL512288260855423RH45813190.53    1 AL358572, AL512288
S/G/Y/R/B/O NT_028053AL512288261036653RH70748195.57    1 AL358572, AL512288
S/G/Y/R/B/O NT_028053AL512288261278193RH45508190.73    1 AL512288
S/G/Y/R/B/O NT_028053AC026088261528351          
S/G/Y/R/B/O NT_028053AL109927261813591RH68976195.57    1AC026088, AC026088, AL109927
S/G/Y/R/B/O NT_028053AL109927261814261RH64351190.63  191.901AC026088, AC026088, AL109927
S/G/Y/R/B/O NT_028053AL109927261865611RH11541192.73    1 AL109927
S/G/Y/R/B/O NT_028053AL109927262214301RH63937192.73  191.701AC026088, AC026088, AF064757, AL109927
S/G/Y/R/B/O NT_028053AL109927262225521RH25167195.57    1AC026088, AC026088, AL109927
S/G/Y/R/B/O NT_028053AL020997262485283RH68405195.57    1AL109927, AL020997, AL109927
S/G/Y/R/B/O NT_028053AL020997262487843RH26461190.53    1AC026088, AL109927, AC026088, AL020997, AL109927
S/G/Y/R/B/O NT_028053AL020997262494803RH50323192.86  191.701AC026088, AL109927, AC026088, AL020997, AL109927
S/G/Y/R/B/O NT_028053AL020997262496353RH44993190.53    1AC026088, AL109927, AC026088, AL020997, AL109927
S/G/Y/R/B/O NT_028053AL020997262497193RH70370190.53    1AC026088, AC026088, AL020997
S/G/Y/R/B/O NT_028053AL020997262502113RH9845195.57    1AC026088, AL109927, AC026088, AL020997, AL109927
S/G/Y/R/B/O NT_028053AL020997262503653RH64712190.53    1AC026088, AL109927, AC026088, AL020997, AL109927
S/G/Y/R/B/O NT_028053AL020997262989493RH92348195.57    1 AL020997
S/G/Y/R/B/O NT_028053AL020997263100353RH93638192.73    1 AL020997
S/G/Y/R/B/O NT_028053AL020997263479443RH66767192.86    1 AL020997
S/G/Y/R/B/O NT_028053AL445490263631923          
S/G/Y/R/B/O NT_028053AL031729264474483RH70828195.57    1 AL031729, AL357335, M63877, Z13989
S/G/Y/R/B/O NT_028053AL031729264508603RH70829195.57    1 AL031729, AL357335
S/G/Y/R/B/O NT_028053AL031729264602743RH76752194.47    1 AL031729, AL357335
S/G/Y/R/B/O NT_028053AL031729264617663RH49281194.10    1 AL357335
S/G/Y/R/B/O NT_028053AL031729265383833RH67089195.57    1 AL031729
S/G/Y/R/B/O NT_028053AL161641265437431          
S/G/Y/R/B/O NT_028053AL663122265847953          


  NT_028053 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028053AL096774266401223RH68756X164.19    1 AL096774
S/G/Y/R/B/O NT_028053AL663123266765723RH64771192.73    1 AL663123
S/G/Y/R/B/O NT_028053AL663123266766023RH18257195.40    1 AL663123
S/G/Y/R/B/O NT_028053AL663123266921263RH12761195.50    1 AL663123
S/G/Y/R/B/O NT_028053AL663123267098013RH102946190.53    1  
S/G/Y/R/B/O NT_028053AL663123267195383RH1427  174220.00  2AL139396, AC002413, AL139396, AL663123
S/G/Y/R/B/O NT_028053AL663123267374943RH44552192.73    1 AL663123
S/G/Y/R/B/O NT_028053AL663123267375843RH69371194.10    1 AL663123
S/G/Y/R/B/O NT_028053AL590640267933093RH63834190.53    1 AL590640
S/G/Y/R/B/O NT_028053AL590640268445303RH260571068.81    2  
S/G/Y/R/B/O NT_028053AL590640268457653RH252337605.64    2AC009365, AC009365, AL590640
S/G/Y/R/B/O NT_028053AL137860269029122RH74957195.46    1 AL137860
S/G/Y/R/B/O NT_028053AL137860269456752RH76269193.17    1 AL137860
S/G/Y/R/B/O NT_028053AL137860269466712RH6959412344.36    1 AL137860
S/G/Y/R/B/O NT_028053AL137860269469232RH75183195.57    1 AL137860
S/G/Y/R/B/O NT_028053AL356390270403501RH102008190.53    1 AL356390, AL592304
S/G/Y/R/B/O NT_028053AL356390270760911RH49350190.63    1 AL356390
S/G/Y/R/B/O NT_028053AC004873271164233RH50568194.37    1AL356390, AC004873, AL356390
S/G/Y/R/B/O NT_028053AC004873271164233SGC33625    197.301AL356390, AC004873, AL356390
S/G/Y/R/B/O NT_028053AC004873271164233RH18219190.43    1AL356390, AC004873, AL356390
S/G/Y/R/B/O NT_028053AC004873271337543RH93759192.73    1AL356390, AB058644, AC004873, AL356390
S/G/Y/R/B/O NT_028053AC004873271339833RH64779192.73    1 AC004873
S/G/Y/R/B/O NT_028053AC004873271547543RH75262192.97    1AL034380, AL356390, AC004873, AL034380, AL356390
S/G/Y/R/B/O NT_028053AC004873271688763RH94302194.37    1AL034380, AC004873, AL034380
S/G/Y/R/B/O NT_028053AC004873271812113RH79228192.73    1AL034380, AC004873, AL034380
S/G/Y/R/B/O NT_028053AC004873271880693RH50313190.53  190.101AL034380, AC004873, AF029081, AL034380
S/G/Y/R/B/O NT_028053AC004873271899893RH10695194.37    1AL034380, AC004873, AL034380
S/G/Y/R/B/O NT_028053AC004873271900213RH12522194.37    1AL034380, AC004873, AF029081, AL034380
S/G/Y/R/B/O NT_028053AC004873271906103RH16684193.48    1AL034380, AC004873, AF029081, AL034380
S/G/Y/R/B/O NT_028053AL034380272474653RH63927188.61    1 AL034380
S/G/Y/R/B/O NT_028053AL034380272474653WI-6306    196.701 AL034380
S/G/Y/R/B/O NT_028053AL034380272474653RH26587192.97    1 AL034380
S/G/Y/R/B/O NT_028053AL034380272474653RH36882188.61    1 AL034380
S/G/Y/R/B/O NT_028053AL034380272936793RH64723188.51    1AL512408, AL034380, AL512408
S/G/Y/R/B/O NT_028053AL512408273265711RH26635194.16    1 AL512408
S/G/Y/R/B/O NT_028053AL512408273270561RH64206188.81  192.201 AL512408
S/G/Y/R/B/O NT_028053AL512408273512291RH46304188.61    1 AL512408
S/G/Y/R/B/O NT_028053AL512408273531711RH65351188.51    1 AL512408
S/G/Y/R/B/O NT_028053AL627082273691443          
S/G/Y/R/B/O NT_028053AL109743273858233          
S/G/Y/R/B/O NT_028053AL627313274707032RH70250188.81    1AL109743, AL109743, AL139224, AL627313
S/G/Y/R/B/O NT_028053AL627313274707172RH49837193.17    1AL109743, AL109743, AL139224, AL627313
S/G/Y/R/B/O NT_028053AL627313274707172WI-7250    194.501AL109743, AL109743, AL139224, AL627313
S/G/Y/R/B/O NT_028053AL627313275710362RH11127188.41    2AL513365, AL513365, AL627313
S/G/Y/R/B/O NT_028053 - RH102025193.07    0  
S/G/Y/R/B/O NT_028053 - D1S511    190.100  
S/G/Y/R/B/O NT_028053 - RH27127190.53    1AC022766, AL645729, AC022766, AL645729
S/G/Y/R/B/O NT_028053 - WI-11521    190.201AL136115, AL136115
S/G/Y/R/B/O NT_028053 - RH48422194.68    0  
S/G/Y/R/B/O NT_028053 - TIGR-A004Z34    191.701AL356489, AF029308, AL356489


  NT_028053 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028053 - RH50749190.53    1AL360012, AL513497, AL714002, AL360012, AL513497, AL714002
S/G/Y/R/B/O NT_028053 - SGC33115    191.701AL136115, AP002344, AL136115, AL139160, AP000933, AP002344
S/G/Y/R/B/O NT_028053 - RH64460190.53    1AL360012, AL513497, AL714002, AL360012, AL513497, AL714002
S/G/Y/R/B/O NT_028053 - RH64650188.41    0  
S/G/Y/R/B/O NT_028053 - RH69076195.57    0AL357500, AC025145, AL354986, AL357500, AL513012
S/G/Y/R/B/O NT_028053 - RH70873188.51    0AL451139, AL451139
S/G/Y/R/B/O NT_028053 - RH70930194.10    0AL096774, AL096774, U18550, X83956
S/G/Y/R/B/O NT_028053 - RH77841190.53    1AL360012, AL513497, AL714002, AL360012, AL513497, AL714002
S/G/Y/R/B/O NT_028053 - RH78056194.37    0  
S/G/Y/R/B/O NT_028053 - RH94083192.34    0