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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_004610
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004610AL391598187018441          
S/G/Y/R/B/O NT_004610AL031730187123183RH69267172.85    1AL391598, AL031730, AL391598
S/G/Y/R/B/O NT_004610AL391883187531763          
S/G/Y/R/B/O NT_004610AL358253188816461RH50559174.17  166.501 AL358253, AL360079
S/G/Y/R/B/O NT_004610AL358253189450211RH76103164.37    1 AL358253
S/G/Y/R/B/O NT_004610AL645485189758493          
S/G/Y/R/B/O NT_004610AL158172190601663RH50628172.75  166.501 AL158172
S/G/Y/R/B/O NT_004610AL158172190603493RH17974172.75    1 AL158172
S/G/Y/R/B/O NT_004610Z98257191533633RH49226175.3811197.00  1 Z98257
S/G/Y/R/B/O NT_004610Z98257191537993RH98493174.02    1 Z98257
S/G/Y/R/B/O NT_004610Z98257191610543RH91975174.02    1 Z98257
S/G/Y/R/B/O NT_004610Z98257191635733RH48163175.38    1 Z98257
S/G/Y/R/B/O NT_004610Z98257192493743RH64426175.3811191.00168.201 Z98257
S/G/Y/R/B/O NT_004610AL020998192792893RH42719175.3811209.00  1 AL020998
S/G/Y/R/B/O NT_004610AL139254193424242RH64205175.38  168.201 AL139254
S/G/Y/R/B/O NT_004610AL139254193795462WI-5834    168.201 AL139254
S/G/Y/R/B/O NT_004610AL139254194519012RH50798175.38  168.201AL391357, AC025224, AL139254, AL356300, AL391357
S/G/Y/R/B/O NT_004610AL139254194522772RH77967178.38    1AL391357, AC025224, AL139254, AL391357
S/G/Y/R/B/O NT_004610AL139254194524452RH37796  11214.00  1AL391357, AC025224, AL139254, AL356300, AL391357
S/G/Y/R/B/O NT_004610AL139254194526052RH64754175.38    1AL391357, AC025224, AL139254, AL356300, AL391357
S/G/Y/R/B/O NT_004610AL139254194529292WI-13126    176.201 AL139254
S/G/Y/R/B/O NT_004610AL391357194689413RH14648  11181.00168.201 AL356300, AL391357
S/G/Y/R/B/O NT_004610AL391357194689733RH9872174.02    1 AL356300, AL391357
S/G/Y/R/B/O NT_004610AL391357194698963RH25460175.38    1 AC025224, AL356300, AL391357
S/G/Y/R/B/O NT_004610AL391357195258273D1S1571    168.201 AL356300
S/G/Y/R/B/O NT_004610AL391357195592933RH45464183.70    1 AC025224, AL356300, AL365439, AL391357
S/G/Y/R/B/O NT_004610AL138784196199233RH50030175.38  168.201AL391357, AC022786, AL138784, AL353647, AL365439, AL391357, AL663074
S/G/Y/R/B/O NT_004610AL138784196200063RH12430175.38    1AL391357, AC022786, AL138784, AL353647, AL365439, AL391357, AL663074
S/G/Y/R/B/O NT_004610AL138784196204073RH50088175.3811257.00168.201 AL138784, AL353647, AL663074
S/G/Y/R/B/O NT_004610AL138784196205033RH64541175.38    1AL391357, AC022786, AL138784, AL353647, AL365439, AL391357, AL663074
S/G/Y/R/B/O NT_004610AL138784196205593RH8609  11250.00  1AL391357, AC022786, AL138784, AL353647, AL365439, AL391357, AL663074
S/G/Y/R/B/O NT_004610AL138784196205923RH91506174.02    1AL391357, AC022786, AL138784, AL353647, AL365439, AL391357, AL663074
S/G/Y/R/B/O NT_004610AL138784196206643RH10614174.02    1 AL138784, AL353647, AL663074
S/G/Y/R/B/O NT_004610AL138784196216813RH64786175.3811257.00  1AL391357, AC022786, AL138784, AL353647, AL365439, AL391357, AL663074, D89060
S/G/Y/R/B/O NT_004610AL138784196217473RH68262174.02    1AL391357, AC022786, AL138784, AL353647, AL365439, AL391357, AL663074, D89060
S/G/Y/R/B/O NT_004610AL138784196335063RH36812175.38    1AL391357, AC022786, AL138784, AL353647, AL365439, AL391357, AL663074
S/G/Y/R/B/O NT_004610AL138784196892493RH27029175.38    1 AC022786, AL138784, AL353647, AL365439, AL663074
S/G/Y/R/B/O NT_004610AL138784196892603RH45524174.02    1 AC022786, AL138784, AL353647, AL365439, AL663074
S/G/Y/R/B/O NT_004610AL138784197126273RH11743175.38    1 AC022786, AL138784, AL353647, AL663074
S/G/Y/R/B/O NT_004610AL138784197452683RH64446177.7711244.00168.201AL606477, AC022786, AL138784, AL353647, AL606477, AL663074
S/G/Y/R/B/O NT_004610AL606477197759833RH47321175.38    1AL358392, AL358392, AL606477
S/G/Y/R/B/O NT_004610AL606477197765173RH45083177.27    1AL358392, AL358392, AL606477
S/G/Y/R/B/O NT_004610AL606477198557443RH65697175.38    1AL358392, AL358392, AL606477
S/G/Y/R/B/O NT_004610AL358392198813382RH50895175.38  168.201 AL358392
S/G/Y/R/B/O NT_004610AL358392198965622RH48482175.38    1 AL358392
S/G/Y/R/B/O NT_004610AL627311199743151RH76416178.18    1 AL627311
S/G/Y/R/B/O NT_004610AL627311200558691RH49869175.38  168.201 AL627311
S/G/Y/R/B/O NT_004610AL627311200816051RH11036174.02    1 AL627311
S/G/Y/R/B/O NT_004610AL627311201014391RH45561175.38    1 AL627311, AL691473
S/G/Y/R/B/O NT_004610AL672037201059303          


  NT_004610 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004610AL031005201867643RH91799175.38    1 AF018034, AL031005
S/G/Y/R/B/O NT_004610AL031005201867843RH26456174.58    1 AF018034, AL031005
S/G/Y/R/B/O NT_004610AL031005201890373RH50752175.38  168.201 AF018034, AL031005
S/G/Y/R/B/O NT_004610AL031005201890373RH32078  11421.00  1 AF018034, AL031005
S/G/Y/R/B/O NT_004610AL031005201891253RH11429174.02    1 AF018034, AL031005
S/G/Y/R/B/O NT_004610AL031005202426083RH49172178.14  169.601AL365182, AL031005, AL365182
S/G/Y/R/B/O NT_004610AL031728202514123          
S/G/Y/R/B/O NT_004610AL365182203253491          
S/G/Y/R/B/O NT_004610AC068751203573131          
S/G/Y/R/B/O NT_004610AL592309204548172RH68104164.58    1AL713858, AL354666, AL356581, AL391068, AL590643, AL592309, AL713858
S/G/Y/R/B/O NT_004610AL592309205488002RH11134176.39    1 AC026565, AL357252, AL592309, X53749
S/G/Y/R/B/O NT_004610AL359815205641693RH11080176.39    1AL592309, AC026565, AL162262, AL357252, AL359815, AL391000, AL592309
S/G/Y/R/B/O NT_004610AL359815205665993RH93776176.37    1AL592309, AL357252, AL359815, AL592309
S/G/Y/R/B/O NT_004610AL359815205846853RH47488179.87    1AL592309, AC023093, AC026565, AL357252, AL359815, AL592309
S/G/Y/R/B/O NT_004610AL359815205847753RH69163174.12    1AL592309, AC023093, AC026565, AL357252, AL359815, AL592309
S/G/Y/R/B/O NT_004610AL359815205847863RH93937177.72    1AL592309, AC023093, AC026565, AL357252, AL359815, AL592309
S/G/Y/R/B/O NT_004610AL359815206669753RH75105177.06    1 AC023093, AL359815
S/G/Y/R/B/O NT_004610AL590103207147953RH64780176.37    1 AC023093, AL590103
S/G/Y/R/B/O NT_004610AL590103207163323RH94323176.37    1 AC023093, AL590103
S/G/Y/R/B/O NT_004610AL590103207222503RH16562176.37    1 AC023093, AL590103
S/G/Y/R/B/O NT_004610AL590103207291273RH26604177.31    1 AC023093, AL590103
S/G/Y/R/B/O NT_004610AL590103208107223RH79675177.06    1 AC020565, AL590103
S/G/Y/R/B/O NT_004610AL590103208115173RH76252173.62    1 AC020565, AL590103
S/G/Y/R/B/O NT_004610AL590103208613393RH48239177.72    1AL590556, AC020565, AL590103, AL590556
S/G/Y/R/B/O NT_004610AL590556209471202RH71429177.56    1 AL590556, AL590556
S/G/Y/R/B/O NT_004610AL590556209660492WI-3056    169.601 AL590556
S/G/Y/R/B/O NT_004610AL590556209973632RH69088177.56    1 AL590556
S/G/Y/R/B/O NT_004610AL031281210186443RH68383177.56    1AL590556, AL031281, AL590556
S/G/Y/R/B/O NT_004610AL031281210762883RH67516177.56    1 AL031281
S/G/Y/R/B/O NT_004610AL031281210776823RH50836177.56  172.401 AL031281
S/G/Y/R/B/O NT_004610AL031281210777233RH69132177.56    1 AL031281
S/G/Y/R/B/O NT_004610AL031281210781133RH49921177.56  172.301 AL031281
S/G/Y/R/B/O NT_004610AL031281211049243RH69949177.56    1 AL031281
S/G/Y/R/B/O NT_004610AL031281211173373RH64228177.56  172.301 AL031281
S/G/Y/R/B/O NT_004610AL445253211295003          
S/G/Y/R/B/O NT_004610AL031279211632583WI-3177    171.001 AL031279
S/G/Y/R/B/O NT_004610AL591122212785571          
S/G/Y/R/B/O NT_004610AL358788213809753          
S/G/Y/R/B/O NT_004610AL035703214866263WI-5581    174.701 AC025929, AL035703
S/G/Y/R/B/O NT_004610AL035703215151603RH80410178.34    1 AC025929, AL035703
S/G/Y/R/B/O NT_004610AL035703215155793RH12833180.99    1 AC025929, AL035703
S/G/Y/R/B/O NT_004610AL035703215181183RH102585180.77    1 AC025929, AL035703
S/G/Y/R/B/O NT_004610AL035703215337023RH49239179.87    1 AC025929, AL035703
S/G/Y/R/B/O NT_004610AL035703215337023RH30659  11410.00  1 AC025929, AL035703
S/G/Y/R/B/O NT_004610AL035703215405673RH48518179.87    1 AC025929, AL035703
S/G/Y/R/B/O NT_004610AL035703215723013RH420  11279.00  1 AC025929, AL035703
S/G/Y/R/B/O NT_004610AL158086216266541RH63879179.87  176.601 AC025929, AL158086
S/G/Y/R/B/O NT_004610AL158086216267191RH1962  11272.00  1 AC025929, AL158086
S/G/Y/R/B/O NT_004610AL158086216347201RH70348181.09    1AL611946, AC013611, AC025929, AL158086, AL611946
S/G/Y/R/B/O NT_004610AL158086216481791RH45415179.87    1AL611946, AL611946, AC013611, AC025929, AL158086, AL611946, AL611946


  NT_004610 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004610AL158086216483701RH50706179.87  176.601AL611946, AL611946, AC013611, AC025929, AL158086, AL611946, AL611946
S/G/Y/R/B/O NT_004610AL158086216485241RH70806179.87    1AL611946, AL611946, AC013611, AC025929, AL158086, AL611946, AL611946
S/G/Y/R/B/O NT_004610AL158086216487351RH78269179.87    1AL611946, AL611946, AC013611, AC025929, AL158086, AL611946, AL611946
S/G/Y/R/B/O NT_004610AL611946216970171          
S/G/Y/R/B/O NT_004610AL512444217426883          
S/G/Y/R/B/O NT_004610AL035704219007313RH64763179.87    1 AC067727, AL035704, AL157403
S/G/Y/R/B/O NT_004610AL035704219007313RH2012  11419.00  1 AC067727, AL035704, AL157403
S/G/Y/R/B/O NT_004610AL035704219083563RH103954179.87    1 AC067727, AL035704, AL157403
S/G/Y/R/B/O NT_004610AL035704219293723RH31555  11423.00  1 AL035704, AL157403
S/G/Y/R/B/O NT_004610AL355534219812313          
S/G/Y/R/B/O NT_004610AL031428220058543RH98397185.31    1AC068311, AC068311, AL031428
S/G/Y/R/B/O NT_004610AL031428220252983AFMA129ZB5    178.201AC068311, AC068311, AL031428
S/G/Y/R/B/O NT_004610AL031428220642123SGC33968    178.301AC068311, AC068311, AL031428
S/G/Y/R/B/O NT_004610AL031428220642123RH50096181.29    1AC068311, AC068311, AL031428
S/G/Y/R/B/O NT_004610AL031428220642123RH33033  11432.00  1AC068311, AC068311, AL031428
S/G/Y/R/B/O NT_004610AL031428220642123RH69757180.77    1AC068311, AC068311, AL031428
S/G/Y/R/B/O NT_004610AL031428220655203RH68600180.77    1 AL031428
S/G/Y/R/B/O NT_004610AL031428220708253RH48726181.09    1AC068311, AC068311, AL031428
S/G/Y/R/B/O NT_004610AL031428220711973SGC33933    178.201AC068311, AC068311, AL031428
S/G/Y/R/B/O NT_004610AL031428220711973RH50162181.29    1AC068311, AC068311, AL031428
S/G/Y/R/B/O NT_004610AL031428220711973RH33023  11436.00  1AC068311, AC068311, AL031428
S/G/Y/R/B/O NT_004610AL031428220712813RH16407181.29    1AC068311, AC068311, AL031428
S/G/Y/R/B/O NT_004610AL031428220721253RH48715179.87    1 AL031428
S/G/Y/R/B/O NT_004610AL031428220721263RH64566179.87    1AC068311, AC068311, AL031428
S/G/Y/R/B/O NT_004610AL031428220976633D1S458    178.201 AL031428
S/G/Y/R/B/O NT_004610AL161672220995683          
S/G/Y/R/B/O NT_004610AL049576221791703RH98554179.87    1 AL049576, AL445206
S/G/Y/R/B/O NT_004610AL049576221805873RH64537179.87    1 AL049576, AL445206
S/G/Y/R/B/O NT_004610AL353585222004263          
S/G/Y/R/B/O NT_004610AC068311222248461          
S/G/Y/R/B/O NT_004610 - RH16441175.38    0  
S/G/Y/R/B/O NT_004610 - SGC35351    169.501AL136529, AC026942, AL136529, AL358795, AL359492
S/G/Y/R/B/O NT_004610 - RH26075178.48    1AL358593, AC026942, AL358593
S/G/Y/R/B/O NT_004610 - WI-13118    169.501AL358593, AC026942, AL358593
S/G/Y/R/B/O NT_004610 - RH44960178.48    1AL031727, AP003160, AL031727, AP003160
S/G/Y/R/B/O NT_004610 - CHLC.GAAT4D10    169.501AL136529, AL358593, AC026942, AL136529, AL358593, AL359492
S/G/Y/R/B/O NT_004610 - RH91577177.21    0  
S/G/Y/R/B/O NT_004610 - WI-16678    172.501AL136529, AC026942, AL136529, AL358795, AL359492
S/G/Y/R/B/O NT_004610 - RH93292179.87    0  
S/G/Y/R/B/O NT_004610 - WI-13057    173.201AL356101, AC068430, AL356101
S/G/Y/R/B/O NT_004610 - RH93521177.56    0