Chromosome 1 - RH Maps - Single Contig

Chromosome 1 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_029862

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_029862	AL139418	190236200	3	RH47048	1	655.84					1		AL139418
S/G/Y/R/B/O	NT_029862	AL139418	190236202	3	RH70952	1	658.66					1		AL139418
S/G/Y/R/B/O	NT_029862	AL139418	190275838	3	RH70863	1	658.66					3		AL139418
S/G/Y/R/B/O	NT_029862	AL139418	190276837	3	RH79164	1	658.66					1		AL139418
S/G/Y/R/B/O	NT_029862	AL353809	190310580	3
S/G/Y/R/B/O	NT_029862	AL627208	190471709	3	RH103014	1	656.45					1		AL627208
S/G/Y/R/B/O	NT_029862	AL356315	190498056	3	RH45908	1	659.95					1		AL356315
S/G/Y/R/B/O	NT_029862	AL513325	190527325	2
S/G/Y/R/B/O	NT_029862	AL136322	190742361	3	RH75385	1	659.98					1		AL136322
S/G/Y/R/B/O	NT_029862	AL136322	190742471	3	RH103147	1	659.95					1		AL136322
S/G/Y/R/B/O	NT_029862	AL136322	190762662	3	AFM329VC1					1	815.30	1		AL136322
S/G/Y/R/B/O	NT_029862	AL136322	190787327	3	RH91397	1	659.95					1		AC008110, AL136322
S/G/Y/R/B/O	NT_029862	AL139136	190795912	2	RH91594	1	659.95					1		AC008110, AL139136
S/G/Y/R/B/O	NT_029862	AL139136	190796085	2	RH75439	1	661.42					1		AC008110, AL139136
S/G/Y/R/B/O	NT_029862	AL139136	190822656	2	RH47360	1	659.95					1		AC008110, AL139136
S/G/Y/R/B/O	NT_029862	AL139136	190827549	2	RH65504	1	656.09					1		AC008110, AL139136
S/G/Y/R/B/O	NT_029862	AL139136	190931954	2	RH48525	1	659.98					1		AC008110, AL138777, AL139136
S/G/Y/R/B/O	NT_029862	AL365258	190996343	3	WI-3002					1	815.50	1		AL138777, AL365258
S/G/Y/R/B/O	NT_029862	AL365258	191003737	3	RH14599			1	7616.00	1	813.80	1		AL138777, AL365258
S/G/Y/R/B/O	NT_029862	AL365258	191003737	3	RH64294	1	656.09					1		AL138777, AL365258
S/G/Y/R/B/O	NT_029862	AL365258	191064632	3	RH70322	1	659.98					1	AC005385,	AC005385
S/G/Y/R/B/O	NT_029862	AL590115	191099106	3
S/G/Y/R/B/O	NT_029862	AL136136	191279633	3
S/G/Y/R/B/O	NT_029862	AC093561	191487518	3	RH64256	1	660.70			1	815.40	1		AC093561
S/G/Y/R/B/O	NT_029862	AC093561	191488415	3	RH68457	1	659.95					1		AC093561
S/G/Y/R/B/O	NT_029862	AC093561	191488553	3	RH67616	1	659.95					1		AC093561
S/G/Y/R/B/O	NT_029862	AC093561	191518248	3	WI-9858					1	815.60	1		AC093561
S/G/Y/R/B/O	NT_029862	AC093419	191574217	1	WI-5370					1	817.00	1		AC093419
S/G/Y/R/B/O	NT_029862	AC093419	191616242	1	RH49823	1	661.26			1	817.00	1		AC093419
S/G/Y/R/B/O	NT_029862	AC093419	191637286	1	RH64491	1	662.05					1		AC093419
S/G/Y/R/B/O	NT_029862	AC093419	191647989	1	RH50459	1	660.66			1	814.70	1		AC093419
S/G/Y/R/B/O	NT_029862		-		RH15141	1	660.60					1	AL157402,	AL157402
S/G/Y/R/B/O	NT_029862		-		AFMA072YH9					1	815.00	1	AL157402,	AL157402
S/G/Y/R/B/O	NT_029862		-		RH36222	1	661.77					1	AL136321, AL355988,	AL136321, AL355988
S/G/Y/R/B/O	NT_029862		-		RH36583	1	661.77					1	AL136321, AL355988,	AL136321, AL355988
S/G/Y/R/B/O	NT_029862		-		RH46415	1	660.56					1	AL355988,	AL355988
S/G/Y/R/B/O	NT_029862		-		RH50082	1	659.95			1	815.50	0		AL356381
S/G/Y/R/B/O	NT_029862		-		RH64733	1	660.60					1	AL136321,	AL136321
S/G/Y/R/B/O	NT_029862		-		AFM207WB12					1	815.60	2	AL157402,	AC025126, AL157402
S/G/Y/R/B/O	NT_029862		-		RH68702	1	660.60					0	AL355988,	AL355988
S/G/Y/R/B/O	NT_029862		-		CHLC.GATA48B01					1	817.00	1	AL157402,	AL157402
S/G/Y/R/B/O	NT_029862		-		RH70956	1	660.60					0	AL355988,	AL355988
S/G/Y/R/B/O	NT_029862		-		RH76432	1	660.60					0	AL355988,	AL355988
S/G/Y/R/B/O	NT_029862		-		RH98676	1	660.56					1	AL157402,	AL157402