Chromosome 1 - RH Maps - Single Contig

Chromosome 1 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_029874

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_029874	AC015905	166401259	1
S/G/Y/R/B/O	NT_029874	AL021026	166438482	3	RH70128	1	618.68					2		AC078800, AL021026
S/G/Y/R/B/O	NT_029874	AL021026	166438640	3	RH63908	1	619.52			1	772.80	2		AC078800, AL021026
S/G/Y/R/B/O	NT_029874	AL021026	166529994	3	RH74905	1	620.39					1		AL021026
S/G/Y/R/B/O	NT_029874	AL021026	166533238	3	RH35950	1	619.52					1		AL021026
S/G/Y/R/B/O	NT_029874	AL445673	166570064	3
S/G/Y/R/B/O	NT_029874	AL031274	166593554	3	RH65987	1	619.52					1		AL031274
S/G/Y/R/B/O	NT_029874	AL031274	166606148	3	RH79904	1	619.88					1		AL031274
S/G/Y/R/B/O	NT_029874	AL031274	166606246	3	RH104486	1	620.49					1		AL031274
S/G/Y/R/B/O	NT_029874	AL031274	166641458	3	RH63903	1	619.52			1	772.90	1		AL031274
S/G/Y/R/B/O	NT_029874	AL031274	166660530	3	RH71013	20	228.85					2	AL022394,	AL022394
S/G/Y/R/B/O	NT_029874	AL031274	166662399	3	RH8109			1	6701.00			1		AL031274
S/G/Y/R/B/O	NT_029874	AL031274	166662458	3	RH36551	1	620.49					1		AL031274
S/G/Y/R/B/O	NT_029874	AL031274	166665745	3	RH92456	1	618.17					1		AL031274
S/G/Y/R/B/O	NT_029874	AL049762	166715694	3	RH48609	1	620.49					1		AL049762
S/G/Y/R/B/O	NT_029874	AL049762	166810103	3	RH50412	1	621.18	1	6686.00	1	777.70	1		AL049762
S/G/Y/R/B/O	NT_029874	AL021579	166844033	3	RH46048	1	619.42					1		AL021579
S/G/Y/R/B/O	NT_029874	AL021579	166852908	3	RH36203	1	623.40					1		AL021579
S/G/Y/R/B/O	NT_029874	AL021579	166854732	3	RH103131	1	619.93					1		AL021579
S/G/Y/R/B/O	NT_029874	AL021579	166861159	3	RH64260	1	620.45			1	772.80	1		AC024490, AL021579
S/G/Y/R/B/O	NT_029874	AL021579	166861350	3	RH64520	1	621.08					1		AC024490, AL021579
S/G/Y/R/B/O	NT_029874	Z98750	166912989	3	RH48828	1	619.93					3	AL161723,	AC024490, AL161723, Z98750
S/G/Y/R/B/O	NT_029874	Z98750	166956036	3	RH70712	1	623.40					1		AC024490, AF049793, Z98750
S/G/Y/R/B/O	NT_029874	Z98751	167020717	3	RH50450	1	623.40			1	771.60	1		Z98751
S/G/Y/R/B/O	NT_029874	Z98751	167020729	3	RH71026	1	621.18			1	771.60	1		Z98751
S/G/Y/R/B/O	NT_029874	Z98751	167020729	3	RH28531	1	619.31					1		Z98751
S/G/Y/R/B/O	NT_029874	Z98751	167021904	3	RH18381	1	623.40					1		AC024490, Z98751
S/G/Y/R/B/O	NT_029874	Z98751	167022293	3	RH67111	1	623.40					1		AC024490, Z98751
S/G/Y/R/B/O	NT_029874	Z98751	167024570	3	RH102530	1	621.18					1		AC024490, Z98751
S/G/Y/R/B/O	NT_029874	AL135931	167088446	3
S/G/Y/R/B/O	NT_029874	AL031864	167117094	3	RH12736	1	623.40					1		AL031864
S/G/Y/R/B/O	NT_029874	AL031864	167118003	3	RH49906	1	623.40			1	771.60	1		AL031864
S/G/Y/R/B/O	NT_029874	AL031864	167118026	3	RH26552	1	624.83					1		AL031864
S/G/Y/R/B/O	NT_029874	AL031864	167118038	3	RH78865	1	619.31					1		AL031864
S/G/Y/R/B/O	NT_029874	AL121984	167324347	3	RH64544	1	621.18					1		AL121984
S/G/Y/R/B/O	NT_029874	AL512843	167370465	3
S/G/Y/R/B/O	NT_029874	AL137157	167488823	3	RH71018	1	623.20			1	768.50	1	AC015905,	AC015905, AL137157
S/G/Y/R/B/O	NT_029874	AL445990	167555296	3
S/G/Y/R/B/O	NT_029874	AL133514	167597614	3
S/G/Y/R/B/O	NT_029874	Z97195	167713693	3	RH71126	1	623.40					1		Z97195
S/G/Y/R/B/O	NT_029874	Z97195	167714785	3	RH98443	1	621.69					1		Z97195
S/G/Y/R/B/O	NT_029874	Z97195	167716760	3	WI-3733					1	770.30	1		Z97195
S/G/Y/R/B/O	NT_029874	Z97195	167731724	3	RH47307	1	621.48					1		Z97195
S/G/Y/R/B/O	NT_029874	Z97195	167733032	3	RH10489	1	623.40					1		Z97195
S/G/Y/R/B/O	NT_029874	Z97195	167762017	3	RH10225	1	623.40					1		AB000360, Z97195
S/G/Y/R/B/O	NT_029874	Z97195	167762183	3	RH12889	1	621.48					1		AB000360, Z97195
S/G/Y/R/B/O	NT_029874	Z97195	167768242	3	RH63964	1	619.62	1	6691.00	1	770.30	1		Z97195
S/G/Y/R/B/O	NT_029874	Z94054	167850403	3
S/G/Y/R/B/O	NT_029874	Z96050	167931960	3	WI-5780					1	776.10	1		AC003117, Z96050
S/G/Y/R/B/O	NT_029874	Z96050	167931986	3	RH17574	1	623.30					1		AC003117, Z96050

NT_029874 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_029874	Z96050	167932065	3	RH63957	1	621.08			1	770.10	1		AC003117, Z96050
S/G/Y/R/B/O	NT_029874	Z96050	167986576	3	RH71076	1	623.30	1	6749.00			1		AC025032, Z96050
S/G/Y/R/B/O	NT_029874	Z96050	167987077	3	AFM107YG1					1	772.80	1		AC025032
S/G/Y/R/B/O	NT_029874	Z98043	168081699	3	WI-4864					1	777.90	1		AC025032, Z98043
S/G/Y/R/B/O	NT_029874	Z97198	168164934	3	RH50597	1	621.18			1	777.80	1		Z97198
S/G/Y/R/B/O	NT_029874	Z97198	168165118	3	RH66437	1	619.42					1		Z97198
S/G/Y/R/B/O	NT_029874	Z97198	168234376	3	RH16219	1	623.20					1		Z97198
S/G/Y/R/B/O	NT_029874	Z97198	168234416	3	RH50700	1	623.30			1	770.20	1		Z97198
S/G/Y/R/B/O	NT_029874	AL031599	168375397	3	RH49378	1	623.30	1	6751.00			1		AL031599
S/G/Y/R/B/O	NT_029874	AL049596	168398880	3
S/G/Y/R/B/O	NT_029874	AL022310	168471871	3	WI-5545					1	770.10	1		AC003115, AC003118, AC079390, AL022310
S/G/Y/R/B/O	NT_029874	AL022310	168504293	3	RH14072			1	6746.00			1		AC003118, AC079390, AL022310
S/G/Y/R/B/O	NT_029874	AL022310	168504408	3	RH17450	1	623.30					1		AC003115, AC003118, AC079390, AL022310
S/G/Y/R/B/O	NT_029874	AL022310	168532507	3	RH11972	1	623.30					1		AC003115, AC003118, AC079390, AL022310
S/G/Y/R/B/O	NT_029874	AL360002	168654197	3	RH68659	1	623.20					1		AL360002
S/G/Y/R/B/O	NT_029874	AL645568	168740418	3	RH93666	1	619.42					1		AL645568
S/G/Y/R/B/O	NT_029874	AL645568	168755201	3	RH36360	1	623.30					1		AL645568
S/G/Y/R/B/O	NT_029874	AL139142	168804090	2	RH69630	1	623.20					1		AL139142
S/G/Y/R/B/O	NT_029874	AL139142	168808303	2	RH11490	1	623.30					1		AL139142
S/G/Y/R/B/O	NT_029874	AL139142	168808422	2	RH13958			1	6748.00			1		AL139142
S/G/Y/R/B/O	NT_029874	AL139142	168808983	2	RH50206	1	621.69	1	6797.00	1	771.50	1		AL139142
S/G/Y/R/B/O	NT_029874	AL139142	168809038	2	RH25333	1	620.55					1		AL139142
S/G/Y/R/B/O	NT_029874	AL139142	168809158	2	RH25579	1	623.50					1
S/G/Y/R/B/O	NT_029874	AL139142	168926591	2	RH50587	1	620.04			1	777.90	1	AC021635,	AC021635, AL139142
S/G/Y/R/B/O	NT_029874	AC021635	168929375	1
S/G/Y/R/B/O	NT_029874		-		RH64514	1	618.79					0
S/G/Y/R/B/O	NT_029874		-		RH14321			1	6470.00			1	Z99572,	Z99572
S/G/Y/R/B/O	NT_029874		-		WI-9125					1	759.50	1	AL021940,	AL021940, M61894
S/G/Y/R/B/O	NT_029874		-		RH14502			1	6669.00			0	AL035702,	AC027051, AL035702
S/G/Y/R/B/O	NT_029874		-		RH13260	1	615.75	1	6507.00			1	AL031285,	AL031285
S/G/Y/R/B/O	NT_029874		-		RH26443	1	617.25					1	AC068046, AL021068,	AC068046, AF272386, AL021068
S/G/Y/R/B/O	NT_029874		-		RH29899			1	6545.00			1	AL121714,	AL121714
S/G/Y/R/B/O	NT_029874		-		RH26850	1	617.07					1	AL121714,	AL121714
S/G/Y/R/B/O	NT_029874		-		RH29901			1	6538.00			1	AL354699,	AL354699
S/G/Y/R/B/O	NT_029874		-		RH28462	1	618.68					1	AL022171,	AL022171
S/G/Y/R/B/O	NT_029874		-		RH64479	1	618.68					1	Z99127,	Z99127
S/G/Y/R/B/O	NT_029874		-		RH71027	1	619.47	1	6554.00	1	760.00	1	AL121714,	AL121714
S/G/Y/R/B/O	NT_029874		-		RH33089			1	6652.00			1	AL139282,	AC027620, AL139282
S/G/Y/R/B/O	NT_029874		-		WI-11175					1	760.00	1	AL021940,	AL021940
S/G/Y/R/B/O	NT_029874		-		WI-7045					1	760.20	1	AL021940,	AL021940
S/G/Y/R/B/O	NT_029874		-		WI-11837					1	760.20	1	Z99572,	Z99572
S/G/Y/R/B/O	NT_029874		-		SGC32933					1	760.30	0	Z99572,	Z99572
S/G/Y/R/B/O	NT_029874		-		RH63960	1	618.37			1	761.00	1	AL031297,	AL031297
S/G/Y/R/B/O	NT_029874		-		RH63958	1	619.42					1	AL109921,	AL109921
S/G/Y/R/B/O	NT_029874		-		RH50328	1	618.79			1	761.10	1	Z97200,	Z97200
S/G/Y/R/B/O	NT_029874		-		RH63963	1	618.58			1	763.70	1	Z99127,	Z99127
S/G/Y/R/B/O	NT_029874		-		RH50480	1	619.31					1	Z99715,	Z99715
S/G/Y/R/B/O	NT_029874		-		D1S210					1	766.10	1	AL031285,	AL031285
S/G/Y/R/B/O	NT_029874		-		RH71023	1	619.47			1	766.50	1	AL121714,	AL121714
S/G/Y/R/B/O	NT_029874		-		RH50606	1	618.07					1		AL359177

NT_029874 (cont)

Links	Contig	Chr Start	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_029874	-	RH66355	1	618.07					1	Z99127,	Z99127
S/G/Y/R/B/O	NT_029874	-	RH75871	1	618.68					1	AL451075,	AL451075
S/G/Y/R/B/O	NT_029874	-	RH78305	1	617.86					1	AL162399,	AL162399
S/G/Y/R/B/O	NT_029874	-	RH91299	1	618.07					1	Z97200,	Z97200
S/G/Y/R/B/O	NT_029874	-	RH98897	1	623.20					0
S/G/Y/R/B/O	NT_029874	-	RH33378			1	6482.00	1	767.00	1	Z99572,	Z99572
S/G/Y/R/B/O	NT_029874	-	D1S452					1	767.20	1	AL162399,	AL162399
S/G/Y/R/B/O	NT_029874	-	WI-6204					1	767.50	1	AL022143,	AC069000, AL022143
S/G/Y/R/B/O	NT_029874	-	SGC32996					1	770.40	1	AL031290,	AL031290
S/G/Y/R/B/O	NT_029874	-	RH814			1	6599.00			1	AL031285,	AL031285
S/G/Y/R/B/O	NT_029874	-	SGC31968					1	770.80	1	Z99127,	Z99127
S/G/Y/R/B/O	NT_029874	-	WI-8904					1	771.00	2	Z94055,	AC023505, Z94055
S/G/Y/R/B/O	NT_029874	-	WI-10691					1	771.00	0
S/G/Y/R/B/O	NT_029874	-	SGC32500					1	771.00	1	Z94057,	Z94057
S/G/Y/R/B/O	NT_029874	-	SGC33706					1	771.00	1	Z94057,	Z94057