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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_029860
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029860AC0648671063006551          
S/G/Y/R/B/O NT_029860AC1144971063720891RH493581316.66    1 AC026941, AC114497
S/G/Y/R/B/O NT_029860AL5907241064312453          
S/G/Y/R/B/O NT_029860AL5906311064563443          
S/G/Y/R/B/O NT_029860AL6720141066080602          
S/G/Y/R/B/O NT_029860AL5896651067066641          
S/G/Y/R/B/O NT_029860AC0193181068063131          
S/G/Y/R/B/O NT_029860AL5128441068281493          
S/G/Y/R/B/O NT_029860AL4510521069871663          
S/G/Y/R/B/O NT_029860AL5911621070950303          
S/G/Y/R/B/O NT_029860AL3553061070979253          
S/G/Y/R/B/O NT_029860AL6065261072029853          
S/G/Y/R/B/O NT_029860AC1035961074223161RH35322  15022.00  1 AC103596
S/G/Y/R/B/O NT_029860AL1624021073492031          
S/G/Y/R/B/O NT_029860AC0931191074625283          
S/G/Y/R/B/O NT_029860AL4996051076591211D1S248    1365.101 AL499605
S/G/Y/R/B/O NT_029860AL4996051076591211RH134031324.46    1 AL499605
S/G/Y/R/B/O NT_029860AL5963271077516193          
S/G/Y/R/B/O NT_029860AL6271691078443563          
S/G/Y/R/B/O NT_029860AL5904531078771563          
S/G/Y/R/B/O NT_029860AL6458581080626173          
S/G/Y/R/B/O NT_029860AC0743761080909861          
S/G/Y/R/B/O NT_029860AL3555391081058201RH508021334.44  1356.801AC074376, AC074376
S/G/Y/R/B/O NT_029860AL5904271081948741RH689401334.11    1 AL590427
S/G/Y/R/B/O NT_029860AL6071331083717602RH120081334.00    1 AL513187, AL607133
S/G/Y/R/B/O NT_029860AL6071331083819922RH928111336.10    1 AL513187, AL607133
S/G/Y/R/B/O NT_029860AC0160851084562371RH689111334.11    1AL607133, AC016085, AL513187, AL607133
S/G/Y/R/B/O NT_029860AC1144911084929181RH42898  15035.00  1AC016085, AC016085, AC114491
S/G/Y/R/B/O NT_029860AC1144911085521091RH419541334.29    1AC007029, AC007029
S/G/Y/R/B/O NT_029860AC1144911086179731RH787881334.33    1 AC114491
S/G/Y/R/B/O NT_029860AC1144911086187881RH124611335.99    1 AC114491
S/G/Y/R/B/O NT_029860AC1144911086188431RH750201334.22    1 AC114491
S/G/Y/R/B/O NT_029860AL5132061086751363          
S/G/Y/R/B/O NT_029860AL5910421087832603          
S/G/Y/R/B/O NT_029860AC0214011089292881          
S/G/Y/R/B/O NT_029860AL3538921089396962          
S/G/Y/R/B/O NT_029860AL3912351089701783          
S/G/Y/R/B/O NT_029860AL3900361090512893RH928351334.00    1AC021401, AC021401, AL390036
S/G/Y/R/B/O NT_029860AL3900361091917583RH174541334.11    1AL356110, AC013627, AL356110, AL390036
S/G/Y/R/B/O NT_029860AL3900361092251253RH1034711334.73    1AL356110, AL359258, AC013627, AL356110, AL359258, AL390036
S/G/Y/R/B/O NT_029860AL3592581092594563RH987131334.29    1 AC013627, AL359258
S/G/Y/R/B/O NT_029860AL3592581093181293RH119321335.19    2AL390038, AL672086, AL359258, AL390038, AL672086
S/G/Y/R/B/O NT_029860AL3592581093181543RH169561334.11    2AL390038, AL672086, AL359258, AL390038, AL672086
S/G/Y/R/B/O NT_029860AL3561101094125181          
S/G/Y/R/B/O NT_029860AL6720861094312101          
S/G/Y/R/B/O NT_029860AL3900381094633503RH119321335.19    2AL359258, AL672086, AL359258, AL390038, AL672086
S/G/Y/R/B/O NT_029860AL3900381094635923RH169561334.11    2AL359258, AL672086, AL359258, AL390038, AL672086
S/G/Y/R/B/O NT_029860AL3920881094971143          
S/G/Y/R/B/O NT_029860AC0260721095700911          
S/G/Y/R/B/O NT_029860AL1601711095990971RH255131334.11    1AC026072, AC026072, AL160171


  NT_029860 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029860AL1601711095991201RH454351336.44    1AC026072, AC026072, AL160171
S/G/Y/R/B/O NT_029860AL1601711096003681RH502941334.22  1374.401AC026072, AC026072, AL160171
S/G/Y/R/B/O NT_029860AL1601711096004991RH120311334.66    1AC026072, AC026072, AL160171
S/G/Y/R/B/O NT_029860AL1601711096242081AFMB014ZB9    1382.101AC026072, AC026072
S/G/Y/R/B/O NT_029860AL1601711096656711RH260091336.22    1AC026072, AC026072, AL160171
S/G/Y/R/B/O NT_029860AL1601711096759561RH646161336.33    1AC026072, AC026072, AL160171
S/G/Y/R/B/O NT_029860AL1601711096770391RH250481335.94    1 AL160171
S/G/Y/R/B/O NT_029860AL1601711096770861RH672011337.13    1AC026072, AC026072, AL160171
S/G/Y/R/B/O NT_029860AL1601711096863301RH120401336.55    1AC026072, AC026072, AL160171
S/G/Y/R/B/O NT_029860AL1601711096863381RH106581335.76    1AC026072, AC026072, AL160171
S/G/Y/R/B/O NT_029860AL3547241097342671          
S/G/Y/R/B/O NT_029860AL5917191097350583RH265501334.29    1AL160171, AL354724, AL160171, AL354724, AL591719
S/G/Y/R/B/O NT_029860AL5917191097351723RH457441335.41    1AL160171, AL354724, AL160171, AL354724, AL591719
S/G/Y/R/B/O NT_029860AL5917191097384303RH14663  15045.00  1 AL591719
S/G/Y/R/B/O NT_029860AL5917191097388563RH912061337.76    1 AL591719
S/G/Y/R/B/O NT_029860AL5917191097405673RH507551337.6515045.001390.501AL354724, AL354724, AL591719
S/G/Y/R/B/O NT_029860AL4492661098471843RH122421336.44    1AL354724, AC025386, AL354724, AL357116, AL449266
S/G/Y/R/B/O NT_029860AL4492661099691623RH38149  15058.00  1AC016518, AC016518, AC025386, AL358592, AL449266
S/G/Y/R/B/O NT_029860AL4492661099692743RH982171337.19    1AC016518, AC016518, AC025386, AL358592, AL449266
S/G/Y/R/B/O NT_029860AL4492661099715013RH695001341.58    1AC016518, AC016518, AC025386, AL358592, AL449266
S/G/Y/R/B/O NT_029860AL4492661099746273RH642181337.59  1401.501AC016518, AC016518, AC025386, AL358592, AL449266
S/G/Y/R/B/O NT_029860AL4492661099757073RH124811340.11    1AC016518, AC016518, AC025386, AL358592, AL449266
S/G/Y/R/B/O NT_029860AL4492661099757893RH508481341.53  1402.601AC016518, AC016518, AC025386, AL358592, AL449266
S/G/Y/R/B/O NT_029860AL4492661099758823RH504521339.89  1401.401AC016518, AC016518, AC025386, AL358592, AL449266
S/G/Y/R/B/O NT_029860AL4492661099759133RH497891339.42  1401.201AC016518, AC016518, AC025386, AL358592, AL449266
S/G/Y/R/B/O NT_029860AL4492661099887563RH502251340.50  1400.401AC016518, AC016518, AC025386, AL358592, AL449266
S/G/Y/R/B/O NT_029860AL4492661100082833RH105431342.78    1AC016518, AC016518, AL358592, AL449266
S/G/Y/R/B/O NT_029860AL3564881100794073RH685601342.67    2AC011645, AC016518, AL138933, AC011645, AC016518, AL138933, AL356488
S/G/Y/R/B/O NT_029860AL3564881100866643RH644721338.33  1389.902AC011645, AL138933, AC011645, AL138933, AL356488
S/G/Y/R/B/O NT_029860AL3564881100867253RH178151344.84    2AC011645, AL138933, AC011645, AL138933, AL356488
S/G/Y/R/B/O NT_029860AL3564881100867433RH251221341.30    2AC011645, AL138933, AC011645, AL138933, AL356488
S/G/Y/R/B/O NT_029860AC0165181100999491          
S/G/Y/R/B/O NT_029860AL4504681101037333          
S/G/Y/R/B/O NT_029860AL1588471102049203RH7827  25138.00  3AC092675, AC112788, AL162590, AC092675, AC112788, AL162590
S/G/Y/R/B/O NT_029860AL1588471102298573RH924  15107.00  1 AL158847
S/G/Y/R/B/O NT_029860AL1588471102388793RH641921338.67  1390.201 AL158847
S/G/Y/R/B/O NT_029860AL1588471102522123RH939051344.51    1 AF043105, AL158847, AL353702
S/G/Y/R/B/O NT_029860AL1588471102713343RH498241339.02  1402.901 AC002520, AL158847, AL353702
S/G/Y/R/B/O NT_029860AL1588471102713533RH8638  15095.00  1 AC002520, AL158847, AL353702
S/G/Y/R/B/O NT_029860AC0000321102954353RH8973  15097.00  2AC000031, AC000031, AC000032, AL353702
S/G/Y/R/B/O NT_029860AC0000311103138943RH8973  15097.00  2AC000032, AC000031, AC000032, AL353702
S/G/Y/R/B/O NT_029860AC0000311103176103RH653891338.96    1 AC000031, AL353702
S/G/Y/R/B/O NT_029860AC0000311103236833RH8994  15093.00  1AL355310, AC000031, AL353702, AL355310
S/G/Y/R/B/O NT_029860AC0000311103236843RH685141339.54    1AL355310, AC000031, AL353702, AL355310
S/G/Y/R/B/O NT_029860AL3553101103571373RH171751342.22    1 AC011780, AL353702, AL355310, M91029, U16272
S/G/Y/R/B/O NT_029860AL3553101103857783RH709721339.54    1 AL355310
S/G/Y/R/B/O NT_029860AL3553101103948253RH508721338.96  1401.701 AL355310, X54048
S/G/Y/R/B/O NT_029860AL3551451104422472RH992151338.33    1AL355310, AC011780, AL355145, AL355310
S/G/Y/R/B/O NT_029860AL3551451104845142RH508101337.87  1393.701AC073364, AC011780, AC073364, AL355145
S/G/Y/R/B/O NT_029860AL3551451104846782RH183201337.25    1AC073364, AC011780, AC073364, AL355145


  NT_029860 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029860AL3551451104887412WI-15799    1402.701AC073364, AC011780, AC073364, AL355145
S/G/Y/R/B/O NT_029860AL3551451104887412RH643591282.98    1AC073364, AC011780, AC073364, AL355145
S/G/Y/R/B/O NT_029860AL3551451104981132RH699201337.99    1AC073364, AC011780, AC073364, AL355145
S/G/Y/R/B/O NT_029860AC0733641105039141          
S/G/Y/R/B/O NT_029860AL3567351105711873RH673781339.42    1AC073364, AC010830, AC073364, AL356735
S/G/Y/R/B/O NT_029860AL3902521105886173RH647481337.99    1AC073364, AC010830, AC073364, AL390252
S/G/Y/R/B/O NT_029860AL3902521105897893RH642251337.19  1390.801AC073364, AC010830, AC073364, AL390252
S/G/Y/R/B/O NT_029860AL3902521105898393RH251141338.73    1AC073364, AC010830, AC073364, AL390252
S/G/Y/R/B/O NT_029860AL3902521106775313RH267391337.93    1 AC010830, AL157901, AL390252
S/G/Y/R/B/O NT_029860AL3902521106790933RH638421337.59  1401.201 AL157901, AL390252
S/G/Y/R/B/O NT_029860AL3902521106965143RH363921337.59    1 AL390252
S/G/Y/R/B/O NT_029860AL3902521107092513RH782591338.62    1 AL157901, AL390252
S/G/Y/R/B/O NT_029860AL3902521107135873RH32454  15074.00  1 AL157901, AL390252
S/G/Y/R/B/O NT_029860AL3902521107148743RH807821338.44    1 AL157901, AL390252
S/G/Y/R/B/O NT_029860AL3563891107504693RH643111337.93  1393.901 AL157901, AL356389
S/G/Y/R/B/O NT_029860AL3563891107510533RH699121346.22    1 AL356389
S/G/Y/R/B/O NT_029860AL3563891107510573RH749411338.50    1 AL356389
S/G/Y/R/B/O NT_029860AL3563891107510733RH366341341.81    1 AL356389
S/G/Y/R/B/O NT_029860AL3563891107518223RH361461340.67    1 AL157901, AL356389
S/G/Y/R/B/O NT_029860AL3563891107717403RH37772  15084.00  1 AL157901, AL356389
S/G/Y/R/B/O NT_029860AL1389331108502233GCT8C07    1396.701AC011645, AC011645, AL138933
S/G/Y/R/B/O NT_029860AL1389331108922393RH178151344.84    2AC011645, AL356488, AC011645, AL138933, AL356488
S/G/Y/R/B/O NT_029860AL1389331108922843RH644721338.33  1389.902AC011645, AL356488, AC011645, AL138933, AL356488
S/G/Y/R/B/O NT_029860AL1389331108922983RH251221341.30    2AC011645, AL356488, AC011645, AL138933, AL356488
S/G/Y/R/B/O NT_029860AL1389331108994723RH685601342.67    2AC011645, AC016518, AL356488, AC011645, AC016518, AL138933, AL356488
S/G/Y/R/B/O NT_029860AC0116451109195831          
S/G/Y/R/B/O NT_029860 - RH1030211340.34    0AL049557, AL049557
S/G/Y/R/B/O NT_029860 - WI-18529    1389.401AL049557, AC022181, AL049557
S/G/Y/R/B/O NT_029860 - RH691391339.02    0  
S/G/Y/R/B/O NT_029860 - AFMB017ZG1    1389.401 AC068027
S/G/Y/R/B/O NT_029860 - RH702681340.34    0  
S/G/Y/R/B/O NT_029860 - WI-22194    1389.701AL109932, AL354760, AL109932, AL354760, AL390062
S/G/Y/R/B/O NT_029860 - RH749101337.19    0 Z18859
S/G/Y/R/B/O NT_029860 - WI-3783    1389.901AL160006, AL360171, AL160006, AL360171
S/G/Y/R/B/O NT_029860 - RH757951337.25    0  
S/G/Y/R/B/O NT_029860 - AFMA247XF9    1389.901AL603832, AL603832
S/G/Y/R/B/O NT_029860 - RH780991337.93    1AL360171, AL360171
S/G/Y/R/B/O NT_029860 - SGC33509    1389.901AL603832, AL603832
S/G/Y/R/B/O NT_029860 - RH935041338.33    0  
S/G/Y/R/B/O NT_029860 - WI-14165    1391.301AL513202, AL513202