Home    Genome Browser    BLAT Search    Help
  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_032979
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_032979AL590728228720661RH69114182.39    1 AL590728, M80815
S/G/Y/R/B/O NT_032979AL590728228721881RH2066  11391.00184.201 AL590728, M80815
S/G/Y/R/B/O NT_032979AL590728228721881RH50197183.60    1 AL590728, M80815
S/G/Y/R/B/O NT_032979AL590728229040971RH68027182.39    1AL590609, AL590609, AL590728
S/G/Y/R/B/O NT_032979AL590728229070101RH11467182.39    1AL590609, AL590609, AL590728
S/G/Y/R/B/O NT_032979AP001456222991741RH65897179.87    1 AL445206, AP001456
S/G/Y/R/B/O NT_032979AL109936223212653RH102523179.87    1AP001456, AL109936, AL445206, AP001456
S/G/Y/R/B/O NT_032979AL109936223325143RH69509181.29    1AP001456, AL109936, AL445206, AP001456
S/G/Y/R/B/O NT_032979AL109936223353143RH64197179.8711428.00179.901AP001456, AL109936, AL445206, AP001456
S/G/Y/R/B/O NT_032979AL109936223354653RH26291180.77    1AP001456, AL109936, AL445206, AP001456
S/G/Y/R/B/O NT_032979AL109936223401753RH64409179.87  179.901AP001456, AL109936, AL445206, AP001456
S/G/Y/R/B/O NT_032979AL109936223506753RH80580181.09    1AP001456, AL109936, AL445206, AP001456
S/G/Y/R/B/O NT_032979AL109936223569113RH98399179.87    1AP001456, AL109936, AL445206, AP001456
S/G/Y/R/B/O NT_032979AL109936223900693RH18214179.87    1AP001456, AL109936, AL445206, AP001456
S/G/Y/R/B/O NT_032979AL109936223905943RH25796179.87    1AP001456, AL109936, AL445206, AP001456
S/G/Y/R/B/O NT_032979AL109936223905943RH64801179.87    1AP001456, AL109936, AL445206, AP001456
S/G/Y/R/B/O NT_032979AL109936223917573RH67070181.29    1AP001456, AL109936, AL445206, AP001456
S/G/Y/R/B/O NT_032979AL109936224020153RH102751179.87    1AP001456, AL109936, AP001456
S/G/Y/R/B/O NT_032979AL109936224020863RH80588180.93    1AP001456, AL109936, AL445206, AP001456
S/G/Y/R/B/O NT_032979AL109936224118773RH91405179.87    1AP001456, AL109936, AP001456
S/G/Y/R/B/O NT_032979AL109936224119993RH70801181.09    1AP001456, AL109936, AP001456
S/G/Y/R/B/O NT_032979AL357134224591873RH69541181.89    1AP001456, AL357134, AP001456
S/G/Y/R/B/O NT_032979AL357134224594683RH102051181.89    1AP001456, AL357134, AP001456
S/G/Y/R/B/O NT_032979AL357134224597653RH64185180.88    1AP001456, AL357134, AP001456
S/G/Y/R/B/O NT_032979AL357134224598543RH18164181.89    1AP001456, AL357134, AP001456
S/G/Y/R/B/O NT_032979AL021154225405713RH71362181.89    1 AL021154
S/G/Y/R/B/O NT_032979AL021154225431083RH50103181.89  181.101 AL021154
S/G/Y/R/B/O NT_032979AL021154225432823RH78295181.89    1 AL021154
S/G/Y/R/B/O NT_032979AL021154225574013RH13627181.8911391.00  1 AL021154
S/G/Y/R/B/O NT_032979AL021154225886703RH70878182.90    1 AL021154, X73428
S/G/Y/R/B/O NT_032979AL021154225886753RH70736183.60    1 AL021154, X73428
S/G/Y/R/B/O NT_032979AL450043226105783          
S/G/Y/R/B/O NT_032979AL451000227232683RP_L11_1    182.701 AF101385, AL451000
S/G/Y/R/B/O NT_032979AL451000227232683RH49599182.90    1 AF101385, AL451000
S/G/Y/R/B/O NT_032979AL451000227302053RH42827  11434.00  1 AL451000
S/G/Y/R/B/O NT_032979AL031295227334513RH79984183.50    1 AL031295
S/G/Y/R/B/O NT_032979AL031295227801803RH64735185.21    1 AL031295
S/G/Y/R/B/O NT_032979AL031295227822333RH65778183.60    1AL590728, AL031295, AL590728
S/G/Y/R/B/O NT_032979AL031295227847813RH48114185.21    1AL590728, AL031295, AL590728
S/G/Y/R/B/O NT_032979AL031295227901673RH69057183.60    1AL590728, AL031295, AL590728
S/G/Y/R/B/O NT_032979AL031295227901813SGC35583    184.201AL590728, AL031295, AL590728
S/G/Y/R/B/O NT_032979AL031295227901813RH50114183.60    1AL590728, AL031295, AL590728
S/G/Y/R/B/O NT_032979AL031295227905443SGC33880    184.201AL590728, AL031295, AL590728
S/G/Y/R/B/O NT_032979AL031295227905443RH50444183.60    1AL590728, AL031295, AL590728
S/G/Y/R/B/O NT_032979AL031295227912203RH75040182.39    1AL590728, AL031295, AL590728
S/G/Y/R/B/O NT_032979AL031295227915113RH93681182.39    1AL590728, AL031295, AL590728
S/G/Y/R/B/O NT_032979AL031295227924503RH77977182.39    1AL590728, AL031295, AL590728
S/G/Y/R/B/O NT_032979AL031295228185003RH70728182.39    1AL590728, AL031295, AL590728
S/G/Y/R/B/O NT_032979AL031295228262113RH67948182.39    1AL590728, AF022382, AL031295, AL590728
S/G/Y/R/B/O NT_032979AL031295228325293RH1922  11303.00  1AL590728, AL031295, AL590728


  NT_032979 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_032979AL031295228325293RH64773182.90    1AL590728, AL031295, AL590728
S/G/Y/R/B/O NT_032979AL031295228325513RH68992182.90    1 AL031295
S/G/Y/R/B/O NT_032979AL031295228327003RH9053  11391.00  1AL590728, AL031295, AL590728
S/G/Y/R/B/O NT_032979AL590609229954832RH672761397.38    1 AL590609
S/G/Y/R/B/O NT_032979AL590609229968502RH115641397.43    1 AL590609
S/G/Y/R/B/O NT_032979AL590609230001272RH200192067.70    2AC090439, AC090439, AL590609, AY048592
S/G/Y/R/B/O NT_032979AL590609230002392RH1351  11372.00  2AC090439, AC090439, AL590609, AY048592
S/G/Y/R/B/O NT_032979AL590609230002942RH26834183.60    3AC090439, AL031679, AC090439, AL031679, AL590609, AY048592
S/G/Y/R/B/O NT_032979AL590609230192012RH11123182.39    1 AL590609
S/G/Y/R/B/O NT_032979 - RH101999181.79    0  
S/G/Y/R/B/O NT_032979 - RH2012  11419.00  1AL035704, AC067727, AL035704, AL157403
S/G/Y/R/B/O NT_032979 - RP_L36    184.200  
S/G/Y/R/B/O NT_032979 - RH11830182.39    0  
S/G/Y/R/B/O NT_032979 - RH30659  11410.00  1AL035703, AC025929, AL035703
S/G/Y/R/B/O NT_032979 - RH12869181.29    0AL158086, AL611946, AC013611, AC025929, AL158086, AL611946
S/G/Y/R/B/O NT_032979 - RH30660  11346.00  1AL034582, AL034582
S/G/Y/R/B/O NT_032979 - RH36334182.39    0  
S/G/Y/R/B/O NT_032979 - RH31555  11423.00  1AL035704, AL035704, AL157403
S/G/Y/R/B/O NT_032979 - RH65742181.89    1AC017067, AL662924, AC017067, AL356116, AL662924
S/G/Y/R/B/O NT_032979 - RH32078  11421.00  1AL031005, AF018034, AL031005
S/G/Y/R/B/O NT_032979 - RH80648180.44    0  
S/G/Y/R/B/O NT_032979 - RH33033  11432.00  1AC068311, AL031428, AC068311, AL031428