Home    Genome Browser    BLAT Search    Help
  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_021979
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_021979AC104456929468381RH108821258.10    1 AC104456
S/G/Y/R/B/O NT_021979AC104456929474501RH674611257.88    1 AC104456
S/G/Y/R/B/O NT_021979AC104456929474581RH646011263.79    1 AC104456
S/G/Y/R/B/O NT_021979AC104456929498031RH647981258.52    1 AC104456
S/G/Y/R/B/O NT_021979AC104456936008681RH30682  14467.00  1 AC104456
S/G/Y/R/B/O NT_021979AC104332929780773          
S/G/Y/R/B/O NT_021979AL133332930772363RH505261265.65  1269.101AC104332, AC004662, AC104332, AL133332
S/G/Y/R/B/O NT_021979AL133332931058083RH272028400.14    2AC024371, AC084697, AC104332, AC004662, AC024371, AC084697, AC104332, AL133332, AL354792
S/G/Y/R/B/O NT_021979AL133332931171213RH492061261.25    1AC104332, AC004662, AC104332, AL133332
S/G/Y/R/B/O NT_021979AL133332931654173WI-5213    1265.201 AC004662, AL133332
S/G/Y/R/B/O NT_021979AL162740932062613RH505521262.86  1272.101 AL162740
S/G/Y/R/B/O NT_021979AL162740932132893RH109251257.67    1 AL162740
S/G/Y/R/B/O NT_021979AL162740932133703RH664401261.25    1 AL162740
S/G/Y/R/B/O NT_021979AL162740932148293RH169031257.88    1 AL162740
S/G/Y/R/B/O NT_021979AL162740932359403RH1032471259.64    1 AL162740
S/G/Y/R/B/O NT_021979AL162740932735293RH697631258.10    1 AL162740
S/G/Y/R/B/O NT_021979AL449283932780043          
S/G/Y/R/B/O NT_021979AC093577933289243          
S/G/Y/R/B/O NT_021979AL117354934550943RH123441262.95    1AC093577, AC093577, AL117354, AL512269
S/G/Y/R/B/O NT_021979AL117354934947503RH363791263.18    1AC093577, AC093577, AL117354, AL512269
S/G/Y/R/B/O NT_021979AL117354935106123RH645851263.27    1AL355822, AL117354, AL355822, AL512269
S/G/Y/R/B/O NT_021979AL117354935113113RH185301258.10    1 AL117354, AL512269
S/G/Y/R/B/O NT_021979AL117354935244883RH501891262.86  1272.101AL355822, AL117354, AL355822, AL512269
S/G/Y/R/B/O NT_021979AL117354935244933RH1286  14485.00  1AL355822, AL117354, AL355822, AL512269
S/G/Y/R/B/O NT_021979AL117354935245813RH645041264.00    1AL355822, AL117354, AL355822, AL512269
S/G/Y/R/B/O NT_021979AL117354935246843RH1364  14481.00  1AL355822, AL117354, AL355822, AL512269
S/G/Y/R/B/O NT_021979AL117354935269483RH661801268.47    1AL355822, AL117354, AL355822, AL512269
S/G/Y/R/B/O NT_021979AL117354935288633RH166851258.10    1AL355822, AL117354, AL355822, AL512269
S/G/Y/R/B/O NT_021979AL117354935288633RH684021258.10    1AL355822, AL117354, AL355822, AL512269
S/G/Y/R/B/O NT_021979AL355822935393761          
S/G/Y/R/B/O NT_021979AC095037936298161RH647261259.64    1AL451010, AC095037, AL451010
S/G/Y/R/B/O NT_021979AC095037936301231RH1030751259.64    1AL451010, AC095037, AL451010
S/G/Y/R/B/O NT_021979AC095037936557421RH699671258.10    1AL451010, AC095037, AL451010
S/G/Y/R/B/O NT_021979AC095037936601791RH642901263.6714447.001272.701 AC095037
S/G/Y/R/B/O NT_021979AL451010937698601RH655261259.43    1AC095037, AC095037, AL451010
S/G/Y/R/B/O NT_021979AL663109938131873          
S/G/Y/R/B/O NT_021979AC023066938295931RH126821258.71    1AC104836, AC023066, AC104836
S/G/Y/R/B/O NT_021979AC023066939156831RH690241258.71    1 AC023066
S/G/Y/R/B/O NT_021979AC104836938580131RH497501260.85  1262.801AC023066, AC023066, AC104836
S/G/Y/R/B/O NT_021979AC104836938580141RH120831258.71    1AC023066, AC023066, AC104836
S/G/Y/R/B/O NT_021979AL139421940304243RH31586  14489.00  1AL355822, AL355822
S/G/Y/R/B/O NT_021979AL137159941280043RH992071263.67    1 AL137159
S/G/Y/R/B/O NT_021979AL137159941621843RH457171259.43    1AC095034, AC009719, AC095034, AL137159
S/G/Y/R/B/O NT_021979AL137159941639423RH809191264.50    1AC095034, AC009719, AC095034, AL137159
S/G/Y/R/B/O NT_021979AL137159941639853RH418841263.67    1AC095034, AC009719, AC095034, AL137159
S/G/Y/R/B/O NT_021979AC095034941950673          
S/G/Y/R/B/O NT_021979AL512651942270803          
S/G/Y/R/B/O NT_021979AL109613943480233RH645931267.01    1 AC022939, AL109613
S/G/Y/R/B/O NT_021979AL109613943482863RH756911265.35    1AL359820, AC022939, AL109613, AL359820
S/G/Y/R/B/O NT_021979AL109613943498203RH498311265.65  1270.801AL359820, AC022939, AL109613, AL359820


  NT_021979 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_021979AL109613943574463RH118261264.40    1AL359820, AC022939, AL109613, AL359820
S/G/Y/R/B/O NT_021979AL109613943575533RH106251267.77    1AL359820, AC022939, AL109613, AL359820
S/G/Y/R/B/O NT_021979AL109613943767893RH456641264.30    1AC055786, AL359820, AC055786, AL109613, AL359820
S/G/Y/R/B/O NT_021979AL109613943779013RH646111264.40    1AC055786, AL359820, AC055786, AL109613, AL359820
S/G/Y/R/B/O NT_021979AL109613943779193RH646091257.67    1AC055786, AL359820, AC055786, AL109613, AL359820
S/G/Y/R/B/O NT_021979AL109613943919393RH644041266.69  1272.101 AL109613
S/G/Y/R/B/O NT_021979AL109613943970813RH642671264.30  1272.101AC055786, AL359820, AC055786, AL109613, AL359820
S/G/Y/R/B/O NT_021979AL109613943992333RH498271258.0214533.001272.801AC055786, AC055786, AL109613
S/G/Y/R/B/O NT_021979AL109613943993563RH182301264.40    1AC055786, AL359820, AC055786, AL109613, AL359820
S/G/Y/R/B/O NT_021979AL109613944106283RH684821257.67    1AL359820, AL109613, AL359820
S/G/Y/R/B/O NT_021979AC055786944677611          
S/G/Y/R/B/O NT_021979AL359820944732421          
S/G/Y/R/B/O NT_021979AL512488945248633          
S/G/Y/R/B/O NT_021979AL049796945594883RH488831264.30    1 AL049796
S/G/Y/R/B/O NT_021979AL049796946325293RH643621265.14  1272.101 AL049796
S/G/Y/R/B/O NT_021979AL049796946671653RH637871264.4014548.00  1 AL049796
S/G/Y/R/B/O NT_021979AL049796946673633RH690461266.47    1 AL049796
S/G/Y/R/B/O NT_021979AL117351947418813WI-3099    1267.401 AL117351
S/G/Y/R/B/O NT_021979AC105278947620431          
S/G/Y/R/B/O NT_021979AC093579947836193RH507351265.97  1272.301AC105278, AC093579, AC105278
S/G/Y/R/B/O NT_021979AC093579947836193RH14631  14548.00  1AC105278, AC093579, AC105278
S/G/Y/R/B/O NT_021979AC093579947976353RH642921267.4414552.001273.401AC105278, AC093579, AC105278
S/G/Y/R/B/O NT_021979AC093579948239293RH642951267.3314577.001272.301AC105278, AC093579, AC105278
S/G/Y/R/B/O NT_021979AC093579949234803RH927841267.23    1 AC093579
S/G/Y/R/B/O NT_021979AC093579949264823RH800761268.20    1 AC093579
S/G/Y/R/B/O NT_021979AL162735949513043RH479711268.30    1 AL162735
S/G/Y/R/B/O NT_021979AL162735949517033RH106471266.07    1 AL162735
S/G/Y/R/B/O NT_021979AL162735949526113RH646711265.97    1 AL162735
S/G/Y/R/B/O NT_021979AL162735949526653RH646461265.97    1 AL162735
S/G/Y/R/B/O NT_021979AL162735949528073RH646571267.23    1 AL162735
S/G/Y/R/B/O NT_021979AL162735949532273RH480731268.41    1 AL162735
S/G/Y/R/B/O NT_021979AL162735949561973RH502211266.5014572.001273.401 AL162735
S/G/Y/R/B/O NT_021979AL162735949772473RH766071267.98    1 AL162735
S/G/Y/R/B/O NT_021979AL162735949774113RH674261265.97    1 AL162735
S/G/Y/R/B/O NT_021979AC097059951130413RH756811268.05    1AL356604, AC097059, AL356604
S/G/Y/R/B/O NT_021979AC097059951233563RH21611267.44  1276.801 AC097059
S/G/Y/R/B/O NT_021979AC097059951233563RH244  14561.00  1 AC097059
S/G/Y/R/B/O NT_021979AL356604952534351RH701921266.07    1 AL139157, AL356604
S/G/Y/R/B/O NT_021979AL138758952998993RH117221266.25    1AC093117, AL356604, AC093117, AL138758, AL139157, AL356604, AL390314
S/G/Y/R/B/O NT_021979AL138758953005403RH285531266.18    1AC093117, AL356604, AC093117, AL138758, AL139157, AL356604
S/G/Y/R/B/O NT_021979AL138758953006723RH8833  14593.00  1AC093117, AL356604, AC093117, AL138758, AL139157, AL356604
S/G/Y/R/B/O NT_021979AL138758953111113RH689611266.29    1AC093117, AL356604, AC093117, AL138758, AL139157, AL356604, AL390314, J02846
S/G/Y/R/B/O NT_021979AL138758953117443RH642961265.97  1272.301AC093117, AC093117, AL390314, J02846
S/G/Y/R/B/O NT_021979AC093117953988703RH983701267.12    1 AC093117, AL390314
S/G/Y/R/B/O NT_021979AC093117954080923RH639111269.06  1272.201 AC093117, AL390314
S/G/Y/R/B/O NT_021979AC093117954553543RH1044091269.01    1 AC025122, AC093117, AL390314
S/G/Y/R/B/O NT_021979AL391555954975423          
S/G/Y/R/B/O NT_021979AC093429955621053RH153531269.93    1 AC025122, AC093429
S/G/Y/R/B/O NT_021979AC093429955767563RH648021270.3714610.00  1 AC093429
S/G/Y/R/B/O NT_021979AC093429956793613RH643371270.37  1281.601AL359554, AC093429, AL157708, AL359554


  NT_021979 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_021979AC093429956799663RH647531272.21    1AL359554, AC093429, AL157708, AL359554
S/G/Y/R/B/O NT_021979AL359554957110983RH184181271.78    1AC105942, AC105942, AL359554
S/G/Y/R/B/O NT_021979AL359554957126633RH124481272.96    1AC105942, AC105942, AL157708, AL359554
S/G/Y/R/B/O NT_021979AL359554957127723RH668881269.93    1AC105942, AC105942, AL157708, AL359554
S/G/Y/R/B/O NT_021979AL359554957127873RH501741270.37  1281.501AC105942, AC105942, AL157708, AL359554
S/G/Y/R/B/O NT_021979AC105942957282941          
S/G/Y/R/B/O NT_021979AC113934958407631          
S/G/Y/R/B/O NT_021979AC095033958480031          
S/G/Y/R/B/O NT_021979AC099787959400561RH660341273.17    1AC113934, AC068766, AC099787, AC113934
S/G/Y/R/B/O NT_021979AC099787960785311RH461851274.18    1AC060770, AC060770, AC099787
S/G/Y/R/B/O NT_021979AC060770960571881          
S/G/Y/R/B/O NT_021979AC091608961481113RH9085  14675.00  1AC060770, AC024432, AC060770, AC091608
S/G/Y/R/B/O NT_021979AL592205962405793          
S/G/Y/R/B/O NT_021979AL357952963664033          
S/G/Y/R/B/O NT_021979AL357150964233453RH664751270.59    1 AC025489, AC025706, AL357150
S/G/Y/R/B/O NT_021979AL139347965970373          
S/G/Y/R/B/O NT_021979AL390919966690473          
S/G/Y/R/B/O NT_021979AL136325966713053          
S/G/Y/R/B/O NT_021979AC092393967541773          
S/G/Y/R/B/O NT_021979AC022661968447021          
S/G/Y/R/B/O NT_021979AL139018968559121WI-9944    1264.402AL138780, AL138780, AL139018
S/G/Y/R/B/O NT_021979AL139018968742101RH492021277.96    2AC022661, AC023879, AC022661, AC023879
S/G/Y/R/B/O NT_021979AC023879968978691          
S/G/Y/R/B/O NT_021979AC092802969376463RH1032491269.60    1 AC092802, AL356152
S/G/Y/R/B/O NT_021979AC092802970042803RH1019761269.33    1AC095033, AC092802, AC095033, AL356152
S/G/Y/R/B/O NT_021979AC092802970045133RH461111270.37    1 AC092802, AL356152
S/G/Y/R/B/O NT_021979AC092802970068763RH14625  14626.00  1AC095033, AC092802, AC095033, AL356152
S/G/Y/R/B/O NT_021979AC092802970070263RH781821270.31    1AC095033, AC092802, AC095033, AL356152
S/G/Y/R/B/O NT_021979AC092802970551093RH505281270.80  1282.101AL139014, AC092802, AL139014, AL356152
S/G/Y/R/B/O NT_021979AC092802970564103RH689371270.04    1AL139014, AC092802, AL139014, AL356152
S/G/Y/R/B/O NT_021979AL139014970979643          
S/G/Y/R/B/O NT_021979AL445218971489983          
S/G/Y/R/B/O NT_021979AL109756971931013          
S/G/Y/R/B/O NT_021979AL356479973274443RH503821273.96    1 AL356479
S/G/Y/R/B/O NT_021979AL356479973274443WI-13482    1291.901 AL356479
S/G/Y/R/B/O NT_021979AC096538974325341          
S/G/Y/R/B/O NT_021979AL604048975121673          
S/G/Y/R/B/O NT_021979AL138780976065633WI-9944    1264.402AL139018, AL138780, AL139018
S/G/Y/R/B/O NT_021979AL138780976248603RH492021277.96    2AC022661, AC023879, AC022661, AC023879
S/G/Y/R/B/O NT_021979AL604047976876023WI-5391    1286.401 AL604047
S/G/Y/R/B/O NT_021979AL390121978494963RH921721277.86    1AC099566, AC004137, AC099566
S/G/Y/R/B/O NT_021979AC099566978617111          
S/G/Y/R/B/O NT_021979AC021191978909251          
S/G/Y/R/B/O NT_021979AC092812978957773          
S/G/Y/R/B/O NT_021979AL683887980566801          
S/G/Y/R/B/O NT_021979 - RH1045501259.64    0  
S/G/Y/R/B/O NT_021979 - RH1227  14474.00  1AL049569, AC026021, AL049569
S/G/Y/R/B/O NT_021979 - CHLC.ATA2E04    1262.101AL162263, AL162263, AL590555
S/G/Y/R/B/O NT_021979 - RH250981263.37    1AC099334, AC099334
S/G/Y/R/B/O NT_021979 - RH13823  14442.00  1AC099334, AC099334


  NT_021979 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_021979 - RH251341270.59    2AC020645, AC097313, AL139425, AC020645, AC097313, AL139425
S/G/Y/R/B/O NT_021979 - RH271961270.85    0AL161744, AL161744
S/G/Y/R/B/O NT_021979 - RH638191259.64  1262.100  
S/G/Y/R/B/O NT_021979 - RH644421261.4514452.001262.201AC099334, AC099334
S/G/Y/R/B/O NT_021979 - RH32459  14602.00  1AL049569, AC026021, AL049569
S/G/Y/R/B/O NT_021979 - WI-5166    1263.100  
S/G/Y/R/B/O NT_021979 - RH33158  14428.00  1AL390195, AL357633, AL390195
S/G/Y/R/B/O NT_021979 - RH37885  14437.00  1AC021075, AC027623, AC034169, AL355871, AL714022, AC021075, AC027623, AC034169, AL355871, AL512381, AL714022
S/G/Y/R/B/O NT_021979 - RH507011265.25  1263.401AC024195, AL162263, AC024195, AL162263, AL590555
S/G/Y/R/B/O NT_021979 - RH666471265.14    0  
S/G/Y/R/B/O NT_021979 - WI-5518    1270.801AL627442, AC022907, AL627442
S/G/Y/R/B/O NT_021979 - RH689931257.67    1AC099334, AC099334
S/G/Y/R/B/O NT_021979 - RH752181270.31    1AL590110, AC022907, AL590110
S/G/Y/R/B/O NT_021979 - RH808891269.16    1AL356457, AL356457, AL449064
S/G/Y/R/B/O NT_021979 - RH916801266.07    0AC104456, AC104456