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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_004441
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004441AC0265671457391591          
S/G/Y/R/B/O NT_004441AL1625961458433573RH180181552.04    1 AF085346, AL162596, U23404
S/G/Y/R/B/O NT_004441AL1625961458466283RH807991538.95    1 AL162596, M13903
S/G/Y/R/B/O NT_004441AL3568671458839693RH680551552.04    1 AL356867
S/G/Y/R/B/O NT_004441AL3568671458840503RH1031911541.31    1 AL356867
S/G/Y/R/B/O NT_004441AL3568671459205743RH179111553.58    1 AL356867
S/G/Y/R/B/O NT_004441AL3568671459676333RH176711553.58    1 AL356867, M84757
S/G/Y/R/B/O NT_004441AL3568671459676933WI-7842    1648.901 AL356867, M84757
S/G/Y/R/B/O NT_004441AL3568671459676933RH496621545.37    1 AL356867, M84757
S/G/Y/R/B/O NT_004441AL3568671459750113RH176731553.58    5AC026567, AC026567, AC026567, AC026567, AC026567, AL139417, AL139417, AC026567, AC026567, AC026567, AC026567, AC026567, AL139417, AL139417, AL356867, AL356867, AL356867
S/G/Y/R/B/O NT_004441AL3568671459751473RH713511553.58    5AC026567, AC026567, AC026567, AC026567, AC026567, AC026567, AL139417, AL139417, AL139417, AL157405, AC026567, AC026567, AC026567, AC026567, AC026567, AC026567, AL139417, AL139417, AL139417, AL157405, AL356867, AL356867, AL356867, X53064
S/G/Y/R/B/O NT_004441AL3568671459914003RH176731553.58    5AC026567, AC026567, AC026567, AC026567, AC026567, AL139417, AL139417, AC026567, AC026567, AC026567, AC026567, AC026567, AL139417, AL139417, AL356867, AL356867, AL356867
S/G/Y/R/B/O NT_004441AL3568671459915363RH713511553.58    5AC026567, AC026567, AC026567, AC026567, AC026567, AC026567, AL139417, AL139417, AL139417, AL157405, AC026567, AC026567, AC026567, AC026567, AC026567, AC026567, AL139417, AL139417, AL139417, AL157405, AL356867, AL356867, AL356867, X53064
S/G/Y/R/B/O NT_004441AL3568671459925873RH181041545.88    1AC026567, AC026567, AC026567, AC026567, AL356867, X53064
S/G/Y/R/B/O NT_004441AL1394171460055043RH176731553.58    5AC026567, AC026567, AC026567, AC026567, AC026567, AL356867, AL356867, AL356867, AC026567, AC026567, AC026567, AC026567, AC026567, AL139417, AL139417, AL356867, AL356867, AL356867
S/G/Y/R/B/O NT_004441AL1394171460056403RH713511553.58    5AC026567, AC026567, AC026567, AC026567, AC026567, AC026567, AL157405, AL356867, AL356867, AL356867, AC026567, AC026567, AC026567, AC026567, AC026567, AC026567, AL139417, AL139417, AL139417, AL157405, AL356867, AL356867, AL356867, X53064
S/G/Y/R/B/O NT_004441AL1394171460282123RH642991552.19    1AC026567, AC026567, AL139417
S/G/Y/R/B/O NT_004441AL1394171460282123SGC35293    1638.001AC026567, AC026567, AL139417
S/G/Y/R/B/O NT_004441AL1394171460285523RH713511553.58    5AC026567, AC026567, AC026567, AC026567, AC026567, AC026567, AL157405, AL356867, AL356867, AL356867, AC026567, AC026567, AC026567, AC026567, AC026567, AC026567, AL139417, AL139417, AL139417, AL157405, AL356867, AL356867, AL356867, X53064
S/G/Y/R/B/O NT_004441AL1394171460473983RH176731553.58    5AC026567, AC026567, AC026567, AC026567, AC026567, AL356867, AL356867, AL356867, AC026567, AC026567, AC026567, AC026567, AC026567, AL139417, AL139417, AL356867, AL356867, AL356867
S/G/Y/R/B/O NT_004441AL1574051460751953SGC35405    1647.001AC026567, AC026567, AL157405
S/G/Y/R/B/O NT_004441AL1574051460751953RH643001552.04    1AC026567, AC026567, AL157405
S/G/Y/R/B/O NT_004441AL1574051460753743RH176731553.58    5AC026567, AC026567, AC026567, AC026567, AC026567, AL139417, AL139417, AL356867, AL356867, AL356867, AC026567, AC026567, AC026567, AC026567, AC026567, AL139417, AL139417, AL356867, AL356867, AL356867
S/G/Y/R/B/O NT_004441AL1574051460754023RH176751553.58    1AC026567, AC026567, AC026567, AC026567, AL157405
S/G/Y/R/B/O NT_004441AL1574051460755103RH713511553.58    5AC026567, AC026567, AC026567, AC026567, AC026567, AC026567, AL139417, AL139417, AL139417, AL356867, AL356867, AL356867, AC026567, AC026567, AC026567, AC026567, AC026567, AC026567, AL139417, AL139417, AL139417, AL157405, AL356867, AL356867, AL356867, X53064
S/G/Y/R/B/O NT_004441AL1574051460763943RH175981553.58    1AC026567, AC026567, AL157405
S/G/Y/R/B/O NT_004441AL1574051460847423RH929271553.58    1AC026567, AC026567, AL157405
S/G/Y/R/B/O NT_004441AL1616361461541682RH803701543.93    1 AL161636
S/G/Y/R/B/O NT_004441AL1616361461977292RH177221545.88    1 AL161636, AL606502, M94077
S/G/Y/R/B/O NT_004441AL5917041462966273RH638681541.63    1 AC011666, AF237581, AF237582, AL591704, AL606502
S/G/Y/R/B/O NT_004441AL5917041463095193RH643051552.71  1652.101 AC011666, AL591704, AL606502, D83657
S/G/Y/R/B/O NT_004441AL5917041463258243RH682211554.27    1 AL591704, AL606502, M21005
S/G/Y/R/B/O NT_004441AL5917041463259383RH115521552.71    1 AL591704, AL606502, M21005
S/G/Y/R/B/O NT_004441AL1574041464022983          
S/G/Y/R/B/O NT_004441AL1622581464695763RH713371555.98    2AL592150, AL162258, AL592150, J02763
S/G/Y/R/B/O NT_004441AL1622581464699683RH110471552.50    2AL592150, AL162258, AL592150, J02763
S/G/Y/R/B/O NT_004441AL1622581464729773RH749111554.06    2AL592150, AL162258, AL592150, J02763
S/G/Y/R/B/O NT_004441AL1622581464794103RH702491555.98    2AL592150, AL162258, AL592150
S/G/Y/R/B/O NT_004441AL1622581464831263RH710911552.71    1 AL162258, Z18950
S/G/Y/R/B/O NT_004441AL1622581465103243RH915541555.98    2AL592150, AL713889, AL162258, AL592150, AL713889
S/G/Y/R/B/O NT_004441AL1622581465158313RH759691558.00    2AL592150, AL713889, AL162258, AL592150, AL713889
S/G/Y/R/B/O NT_004441AL1622581465294563RH498481552.61    2AL592150, AL713889, AL162258, AL592150, AL713889
S/G/Y/R/B/O NT_004441AL1622581465294563WI-21724    1672.902AL592150, AL713889, AL162258, AL592150, AL713889
S/G/Y/R/B/O NT_004441AL1622581465295493RH358471555.98    2AL592150, AL713889, AL162258, AL592150, AL713889
S/G/Y/R/B/O NT_004441AL1622581465300013RH780451552.50    2AL592150, AL713889, AL162258, AL592150, AL713889
S/G/Y/R/B/O NT_004441AL1622581465300613RH766571538.71    2AL592150, AL713889, AL162258, AL592150, AL713889
S/G/Y/R/B/O NT_004441 - RH1020781553.55    1AL138795, AL138795
S/G/Y/R/B/O NT_004441 - RH1045701553.76    0  
S/G/Y/R/B/O NT_004441 - RH108481553.34    1AC018785, AL591493, AC018785, AL591493, X57985
S/G/Y/R/B/O NT_004441 - RH114771552.65    0AL162258, AL162258, Z18950, Z33457


  NT_004441 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004441 - RH127781553.76    0AL592424, AL592111, AL592424
S/G/Y/R/B/O NT_004441 - RH128501552.71    1AC018785, AL591493, AC018785, AL591493
S/G/Y/R/B/O NT_004441 - RH163711553.55    1AL138795, AC026050, AL138795, AL359875, AL359883, AL365403
S/G/Y/R/B/O NT_004441 - RH170811553.55    1AL358073, AC022243, AL358073
S/G/Y/R/B/O NT_004441 - RH183681553.44    0AL591493, AL591493
S/G/Y/R/B/O NT_004441 - RH270501553.48    1AL358073, AL590487, AC022064, AC022243, AL358073, AL358353, AL590487
S/G/Y/R/B/O NT_004441 - RH462161552.61    0  
S/G/Y/R/B/O NT_004441 - RH500001552.50    0  
S/G/Y/R/B/O NT_004441 - RH502521553.34    1AC018785, AL591493, AC018785, AL591493, X57985
S/G/Y/R/B/O NT_004441 - RH646151552.71    0  
S/G/Y/R/B/O NT_004441 - RH690221553.48    1AL591493, AL591493
S/G/Y/R/B/O NT_004441 - RH694331553.55    1AL358073, AL358073, AL358353
S/G/Y/R/B/O NT_004441 - RH704161553.55    1AL138795, AL138795, AL365403
S/G/Y/R/B/O NT_004441 - RH925761553.58    0