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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_021953
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_021953AC0256422209574491          
S/G/Y/R/B/O NT_021953AL5911792209631531          
S/G/Y/R/B/O NT_021953AC0927652209979321RH30712  18729.00  1 AL391061
S/G/Y/R/B/O NT_021953AL3600082210278743          
S/G/Y/R/B/O NT_021953AC1035902210514313RH14135  18589.00  2AC026071, AC026071, AC103590
S/G/Y/R/B/O NT_021953AC1035902210514323RH506811707.33  1849.002AC026071, AC026071, AC103590
S/G/Y/R/B/O NT_021953AC1035902210514363RH1218  18585.00  2AC026071, AC026071, AC103590
S/G/Y/R/B/O NT_021953AC1035902210515473RH708351707.33    2AC026071, AC026071, AC103590
S/G/Y/R/B/O NT_021953AC1035902211403783RH659861705.83    2AC026071, AC026071, AC103590
S/G/Y/R/B/O NT_021953AC1035902212305603RH644511705.9318761.001849.001AL445435, AC012440, AC103590, AL445435
S/G/Y/R/B/O NT_021953AC1035902212305933RH359831707.33    1AL445435, AC012440, AC103590, AL445435
S/G/Y/R/B/O NT_021953AC1035902212306503RH74511  18746.00  1AL445435, AC012440, AC103590, AL445435
S/G/Y/R/B/O NT_021953AC1035902212311233RH692831707.33    1AL445435, AC012440, AC103590, AL445435
S/G/Y/R/B/O NT_021953AC1035902212329563RH74525  18626.00  1AL445435, AC012440, AL445435
S/G/Y/R/B/O NT_021953AC1035902212333003RH161471707.33    1AL445435, AC012440, AC103590, AL445435
S/G/Y/R/B/O NT_021953AC1035902212333173TIGR-A005E47    1872.601AL445435, AC012440, AC103590, AL445435
S/G/Y/R/B/O NT_021953AC1035902212333173RH499101706.42    1AL445435, AC012440, AC103590, AL445435
S/G/Y/R/B/O NT_021953AC1035902212360273RH270491707.33    1AL445435, AC012440, AC103590, AL445435
S/G/Y/R/B/O NT_021953AL4454352212474143WI-22781    1865.701 AC012440, AL445435
S/G/Y/R/B/O NT_021953AL4454352212474143RH498521707.03    1 AC012440, AL445435
S/G/Y/R/B/O NT_021953AL4454352213050603RH1917  18604.00  1 AL445435
S/G/Y/R/B/O NT_021953AL4454352213224123RH711311707.33    1 AL445435
S/G/Y/R/B/O NT_021953AL4454352213314553RH703161707.33    1 AL445435
S/G/Y/R/B/O NT_021953AL4510812214466153RH492491707.23    1 AL451081
S/G/Y/R/B/O NT_021953AC0966442214882573AFMA152ZD1    1872.201 AC096644
S/G/Y/R/B/O NT_021953AC0966402216010431          
S/G/Y/R/B/O NT_021953AC0163142216098591          
S/G/Y/R/B/O NT_021953AL5924062217453653RH711291706.4218623.00  1 AC091574
S/G/Y/R/B/O NT_021953AL5924062217820253WI-12874    1874.301 AC025710, AC091566, AL592406
S/G/Y/R/B/O NT_021953AL5924062217820253RH710481706.31    1 AC025710, AC091566, AL592406
S/G/Y/R/B/O NT_021953AL5924062217820593RH14291  18631.00  1 AC025710, AC091566, AL592406
S/G/Y/R/B/O NT_021953AL5924062217821923RH254591706.33    1 AC025710, AC091566, AL592406
S/G/Y/R/B/O NT_021953AL3593532218288093          
S/G/Y/R/B/O NT_021953AL6067262218675323RH117891706.23    1 AL606726
S/G/Y/R/B/O NT_021953AL4454232218971913WI-20349    1867.001 AL445423
S/G/Y/R/B/O NT_021953AL4454232218971913RH500801706.31    1 AL445423
S/G/Y/R/B/O NT_021953AL4454232218973243RH167341707.33    1 AL445423
S/G/Y/R/B/O NT_021953AL4454232219118343RH711031706.4218635.00  1 AL445423
S/G/Y/R/B/O NT_021953AL4454232219118343RH711071707.3318635.00  1 AL445423
S/G/Y/R/B/O NT_021953AL4454232219678753SGC32821    1874.301AL356002, AF217621, AL356002, AL445423
S/G/Y/R/B/O NT_021953AL4454232219678753RH506501706.33    1AL356002, AF217621, AL356002, AL445423
S/G/Y/R/B/O NT_021953AL4454232220441933RH492831707.33    1 AL445423, AL603862
S/G/Y/R/B/O NT_021953AL3560022220492021          
S/G/Y/R/B/O NT_021953AL4454662220608443          
S/G/Y/R/B/O NT_021953AL3598332222248863          
S/G/Y/R/B/O NT_021953AL4454702224323493RH485771711.41    1AL662928, AL445470, AL662928
S/G/Y/R/B/O NT_021953AL6629282224330123          
S/G/Y/R/B/O NT_021953AL3600132226125823RH1041371710.17    1 AL360013
S/G/Y/R/B/O NT_021953AL3600132226824913RH492581710.27    1 AL360013
S/G/Y/R/B/O NT_021953AL3567882227133213          


  NT_021953 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_021953AL5909662227585353RH695681708.93    1 AL590966
S/G/Y/R/B/O NT_021953AL5909662227587673RH458901710.27    1 AL590966
S/G/Y/R/B/O NT_021953AL5909662227591173RH710621711.98  1902.401 AL590966
S/G/Y/R/B/O NT_021953AL5924832229001513          
S/G/Y/R/B/O NT_021953AC0155952231205591          
S/G/Y/R/B/O NT_021953AL6064932231284163          
S/G/Y/R/B/O NT_021953AL3561082231370253          
S/G/Y/R/B/O NT_021953AL1581712233381003WI-3259    1873.301 AL158171
S/G/Y/R/B/O NT_021953AL5133632233463723          
S/G/Y/R/B/O NT_021953AL5133142234538453          
S/G/Y/R/B/O NT_021953AL5921482235708663RH41761  18724.00  1 AL592148
S/G/Y/R/B/O NT_021953AL5921482235708723RH789131710.87    1 AL592148
S/G/Y/R/B/O NT_021953AL5921482236022243RH938911710.87    1 AC026068, AL590088, AL592148
S/G/Y/R/B/O NT_021953AL5921482236780463RH122511711.41    1 AC026068, AL590088, AL592148
S/G/Y/R/B/O NT_021953AL5921482236786823RH162141709.86    1 AC026068, AL590088, AL592148
S/G/Y/R/B/O NT_021953AL5921482236787623RH501491710.17  1897.101 AC026068, AL590088, AL592148
S/G/Y/R/B/O NT_021953AL5921482236796353RH459241711.02    1 AC026068, AL590088, AL592148
S/G/Y/R/B/O NT_021953AL5921482236801913WI-6232    1869.501 AC026068, AL590088
S/G/Y/R/B/O NT_021953AL5921482236801913RH639221710.24    1 AC026068, AL590088
S/G/Y/R/B/O NT_021953AL5921482236802483RH170911710.87    1 AC026068, AL590088, AL592148
S/G/Y/R/B/O NT_021953AL5921482236802623RH369531710.45    1 AC026068, AL590088, AL592148
S/G/Y/R/B/O NT_021953AL3921722237236553RH750681711.20    1 AL392172
S/G/Y/R/B/O NT_021953AL3921722237437613RH1021211709.86    1 AL392172
S/G/Y/R/B/O NT_021953AL3921722237472243WI-19703    1873.501 AL392172
S/G/Y/R/B/O NT_021953AL3921722237472243RH502551711.20    1 AL392172
S/G/Y/R/B/O NT_021953AL3921722237472453RH937621710.87    1 AL392172
S/G/Y/R/B/O NT_021953AL3921722237473233RH800181712.26    1 AL392172
S/G/Y/R/B/O NT_021953AL3921722237548383RH410256618.21    2AL135914, AL135914, AL392172, X65965
S/G/Y/R/B/O NT_021953AL3921722237806953D1S469    1890.101 AL392172
S/G/Y/R/B/O NT_021953AL3921722238494753RH127971710.87    1 AL392172
S/G/Y/R/B/O NT_021953AL3921722238495223RH264851710.87    1 AL392172
S/G/Y/R/B/O NT_021953AL5135442238959193          
S/G/Y/R/B/O NT_021953AC0931522240181723RH983281710.87    1AC021194, AC021194, AC093152
S/G/Y/R/B/O NT_021953AC0211942240587361          
S/G/Y/R/B/O NT_021953 - WI-18957    1877.901AL591895, AC058782, AF253417, AL591895, U06661
S/G/Y/R/B/O NT_021953 - SGC30224    1880.501AL365444, AC026277, AL359982, AL365444
S/G/Y/R/B/O NT_021953 - WI-4355    1880.800  
S/G/Y/R/B/O NT_021953 - AFM324XH5    1881.801AC021778, AC025060, AC021778, AC025060, AL513528, AL591380