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  Chromosome 6 - RH Maps - Single Contig
 

Chromosome 6 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033125 NT_033164 NT_033126 NT_033128 NT_033144 NT_033156 NT_033142 NT_033120
NT_033135 NT_033151 NT_033162 NT_033163 NT_033143 NT_033124 NT_033129 NT_033138
NT_033159 NT_026313 NT_033155 NT_033173 NT_033140 NT_033153 NT_023442 NT_033146
NT_033136 NT_033149 NT_033154 NT_033160 NT_033134 NT_029317 NT_007592 NT_033137
NT_033139 NT_033147 NT_033158 NT_033161 NT_033145 NT_033141 NT_033123 NT_033130
NT_033127 NT_033122 NT_033152 NT_033121 NT_033148 NT_033171 NT_033132 NT_033943
NT_033172 NT_033948 NT_033131 NT_033946 NT_007540 NT_023463 NT_007158 NT_029990
NT_023399 NT_033133 NT_007299 NT_019424 NT_007563 NT_033944 NT_033947 NT_030710
NT_025741 NT_027046 NT_023451 NT_029991 NT_007422 NT_007302 NT_007627 NT_007583


  NT_029991
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029991AC0271661697058281          
S/G/Y/R/B/O NT_029991AL6070681697138423RH372766611.71    1 AL607068
S/G/Y/R/B/O NT_029991AL6070681697143923RH161326612.08    1 AL607068
S/G/Y/R/B/O NT_029991AL6070681697147073RH654126611.71    1 AL607068
S/G/Y/R/B/O NT_029991AL3909551697352663          
S/G/Y/R/B/O NT_029991AL1173441698101283RH363026614.43    1 AL117344
S/G/Y/R/B/O NT_029991AL1173441698170203RH697806614.13    1 AL117344
S/G/Y/R/B/O NT_029991AL1173441698756313RH485  66590.00  1 AL117344
S/G/Y/R/B/O NT_029991AL1173441698931913RH704126614.13    1 AL117344
S/G/Y/R/B/O NT_029991AL4503281699403153          
S/G/Y/R/B/O NT_029991AL1335101700638971CHLC.GATA22G09    6828.801 AC010932, AL133510
S/G/Y/R/B/O NT_029991AL1335101700951661RH33404  66630.00  1 AC010932, AL133510
S/G/Y/R/B/O NT_029991AL1335101700955981RH605656616.37  6827.201 AL133510
S/G/Y/R/B/O NT_029991AL1335101700957521RH466116614.43    1 AL133510
S/G/Y/R/B/O NT_029991AL1335101700998911RH611376614.43  6826.001 AL133510
S/G/Y/R/B/O NT_029991AL1335101700999421RH466636614.03    1 AL133510
S/G/Y/R/B/O NT_029991AL1335101701324261RH427166614.23    1 AL133510
S/G/Y/R/B/O NT_029991AL3918631701887733WI-4986    6824.701 AC010932, AL391863
S/G/Y/R/B/O NT_029991AL3918631702031713RH364236614.13    1 AL160261, AL391863
S/G/Y/R/B/O NT_029991AL3918631702741573RH183426614.43    1 AL160261, AL391863
S/G/Y/R/B/O NT_029991AL3918631702756043RH158276614.43    1 AL160261, AL391863
S/G/Y/R/B/O NT_029991AL0356341703595153RH921746614.43    1 AL035634
S/G/Y/R/B/O NT_029991AL1393301703651633RH606206614.53  6826.001 AL139330
S/G/Y/R/B/O NT_029991AL1393301703669043RH751086615.72    1 AL139330
S/G/Y/R/B/O NT_029991AL1393301703816473RH376536615.72    1 AL139330
S/G/Y/R/B/O NT_029991AL1393301705203023RH756076611.91    1 AL139330
S/G/Y/R/B/O NT_029991AL1393301705209943RH408386614.33    1 AL139330
S/G/Y/R/B/O NT_029991AL1359071705327643RH778476614.53    1 AL135907
S/G/Y/R/B/O NT_029991AL5907031706142603RH484016616.37    1 AC009814, AL590703
S/G/Y/R/B/O NT_029991AL1333471706209873RH1029556616.89    1 AC009814, AL133347
S/G/Y/R/B/O NT_029991AL1333471706210743RH611766616.27  6826.501 AC009814, AL133347
S/G/Y/R/B/O NT_029991AL1333471706912133RH487636616.37    1 AC009814, AL133347
S/G/Y/R/B/O NT_029991AL3601691707341193RH605436616.27  6826.501 AL360169
S/G/Y/R/B/O NT_029991AL3601691707341663RH466436616.37    1 AL360169
S/G/Y/R/B/O NT_029991AL3601691707819133RH605346616.37  6827.201 AL161721, AL360169
S/G/Y/R/B/O NT_029991AL3601691707898703RH364696616.89    1  
S/G/Y/R/B/O NT_029991AL3538001709218073RH363456616.27    1 AL353800
S/G/Y/R/B/O NT_029991AL3538001709293213RH408646616.27    1 AL353800
S/G/Y/R/B/O NT_029991AL3538001709301473RH488406616.37    1 AL353800
S/G/Y/R/B/O NT_029991AL5902421709354653          
S/G/Y/R/B/O NT_029991AL5910251710358053RH374236616.37    1 AL591025
S/G/Y/R/B/O NT_029991AL5910251710514903RH923866616.37    1 AL591025
S/G/Y/R/B/O NT_029991AL5910251710565773RH468456616.27    1 AL591025
S/G/Y/R/B/O NT_029991AL5910251710571183RH1208  66620.00  1 AL591025
S/G/Y/R/B/O NT_029991AL5910251710571333RH608906616.3766560.006827.201 AL591025
S/G/Y/R/B/O NT_029991AL5910251710573133RH126556616.27    1 AL591025
S/G/Y/R/B/O NT_029991AL5910251710586693RH668666616.27    1 AL591025
S/G/Y/R/B/O NT_029991AL5899311711867262RH462046619.63    1 AL589931
S/G/Y/R/B/O NT_029991AL5899311711878182RH608176621.6066551.006829.001 AL589931
S/G/Y/R/B/O NT_029991AL5899311711878332RH466016621.60    1 AL589931


  NT_029991 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029991AL5899311711885822RH13827  35081.00  1 AL589931
S/G/Y/R/B/O NT_029991AL5899311712074442RH913856619.71    1 AL589931
S/G/Y/R/B/O NT_029991AL6274221713320613RH992756621.65    1 AL627107, AL627422
S/G/Y/R/B/O NT_029991AL6274221713440013RH125486616.89    1 AL627422
S/G/Y/R/B/O NT_029991AL0355301713950923RH664906621.65    1 AL035530
S/G/Y/R/B/O NT_029991AL0355301714082143RH375806620.35    1 AL035530
S/G/Y/R/B/O NT_029991AL0355301714583943RH667766628.06    1 AC024402, AL035530
S/G/Y/R/B/O NT_029991AL3564171714948603          
S/G/Y/R/B/O NT_029991AL3554921716011873          
S/G/Y/R/B/O NT_029991AL5905511716701473RH375786621.65    1AC027166, AC024677, AC027166, AL590551
S/G/Y/R/B/O NT_029991AL5905511716939253RH675086616.27    1AC027166, AC024677, AC027166, AL590551
S/G/Y/R/B/O NT_029991AL5905511716939433RH783536621.65    1AC027166, AC024677, AC027166, AL590551
S/G/Y/R/B/O NT_029991AL3578321717598093          
S/G/Y/R/B/O NT_029991AL0786041719071673          
S/G/Y/R/B/O NT_029991AL5897251720237553          
S/G/Y/R/B/O NT_029991AL1359141721012953RH410256618.21    2AL392172, AL135914, AL392172, X65965
S/G/Y/R/B/O NT_029991AL1359141721030823RH609696622.0666664.006830.601 AL135914, X65965
S/G/Y/R/B/O NT_029991AL1359141721032773RH164626619.81    1 AL135914, S77127, X65965
S/G/Y/R/B/O NT_029991AL1359141721042103RH372326622.0666671.00  1 AL135914, S77127, X65965
S/G/Y/R/B/O NT_029991AL1359141721538323RH453516619.81    1 AL135914
S/G/Y/R/B/O NT_029991AL1359141721704443RH607276622.06  6831.102AL158050, AL135914, AL158050
S/G/Y/R/B/O NT_029991AL1359141721753483RH453466622.06    1 AL135914
S/G/Y/R/B/O NT_029991AL1359141721778753RH451416622.06    1 AL135914
S/G/Y/R/B/O NT_029991AL1359141721944173RH38165  66671.00  1 AL135914
S/G/Y/R/B/O NT_029991AL1359141721944313RH934776622.06    1 AL135914
S/G/Y/R/B/O NT_029991AL1359141722008773RH373586622.0666671.00  1 AL135914
S/G/Y/R/B/O NT_029991AL1359141722010573RH33682  121096.00  2 AL135914
S/G/Y/R/B/O NT_029991AL1390451722201423RH1030156622.06    1 AL139045
S/G/Y/R/B/O NT_029991AL1390451722778063RH376156618.3166671.00  1 AL139045
S/G/Y/R/B/O NT_029991AL0356911723297433RH176606620.83    1 AL035691
S/G/Y/R/B/O NT_029991AL0356911723299363RH934916618.31    1 AL035691
S/G/Y/R/B/O NT_029991AL3536251725271553RH606326624.28  6831.901AC022322, AC022322, AF069333, AF348209, AL353625
S/G/Y/R/B/O NT_029991AL3536251725272873RH157986624.28    1AC022322, AC022322, AF069333, AF348209, AL353625, AL645523
S/G/Y/R/B/O NT_029991AL3536251725821723RH926086624.28    1AC022322, AL645733, AC022322, AL353625, AL645523, AL645733
S/G/Y/R/B/O NT_029991AL6457331725833083          
S/G/Y/R/B/O NT_029991AL1625821726759533WI-5094    6838.901AC022322, AC024253, AC022322, AC024253, AL162582, AL645523
S/G/Y/R/B/O NT_029991AL3555061727023683          
S/G/Y/R/B/O NT_029991AL5910691728738252RH263056624.28    1 AC040893, AL591069
S/G/Y/R/B/O NT_029991AL5910691728746592RH651196624.28    1 AC040893, AL591069, AL645523
S/G/Y/R/B/O NT_029991AL5910691728755772RH157896624.28    2AC010893, AL109933, AC010893, AC040893, AL109933, AL591069, AL645523
S/G/Y/R/B/O NT_029991AL5910691728756232RH410316620.83    3AL596089, AL596089, AL645523
S/G/Y/R/B/O NT_029991AC0223221729363801          
S/G/Y/R/B/O NT_029991AC0341361729377251          
S/G/Y/R/B/O NT_029991AC0242531729409661          
S/G/Y/R/B/O NT_029991 - RH1043096620.63    1AL512410, AC026098, AL512410
S/G/Y/R/B/O NT_029991 - RH32072  66640.00  1AL049820, AL049820
S/G/Y/R/B/O NT_029991 - RH358706624.28    0AC022322, AL353625, AC022322, AF069333, AF348209, AL353625
S/G/Y/R/B/O NT_029991 - RH8655  66626.00  1AL050337, AL050337, AL158138, AL445424
S/G/Y/R/B/O NT_029991 - RH363806616.37    0  
S/G/Y/R/B/O NT_029991 - RH408486620.52    0  


  NT_029991 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029991 - RH409786620.56    0  
S/G/Y/R/B/O NT_029991 - RH410276616.27    0  
S/G/Y/R/B/O NT_029991 - RH465076621.65    0  
S/G/Y/R/B/O NT_029991 - RH928716616.89    0