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  Chromosome 6 - RH Maps - Single Contig
 

Chromosome 6 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033125 NT_033164 NT_033126 NT_033128 NT_033144 NT_033156 NT_033142 NT_033120
NT_033135 NT_033151 NT_033162 NT_033163 NT_033143 NT_033124 NT_033129 NT_033138
NT_033159 NT_026313 NT_033155 NT_033173 NT_033140 NT_033153 NT_023442 NT_033146
NT_033136 NT_033149 NT_033154 NT_033160 NT_033134 NT_029317 NT_007592 NT_033137
NT_033139 NT_033147 NT_033158 NT_033161 NT_033145 NT_033141 NT_033123 NT_033130
NT_033127 NT_033122 NT_033152 NT_033121 NT_033148 NT_033171 NT_033132 NT_033943
NT_033172 NT_033948 NT_033131 NT_033946 NT_007540 NT_023463 NT_007158 NT_029990
NT_023399 NT_033133 NT_007299 NT_019424 NT_007563 NT_033944 NT_033947 NT_030710
NT_025741 NT_027046 NT_023451 NT_029991 NT_007422 NT_007302 NT_007627 NT_007583


  NT_023451
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023451AL5839631620775853RH925026591.03    2AL078581, AL078581, AL583963
S/G/Y/R/B/O NT_023451AL3588521621377603          
S/G/Y/R/B/O NT_023451AL3553121621547771RH677226598.74    1 AL355312
S/G/Y/R/B/O NT_023451AL3553121621560541RH1024666589.78    1 AL355312
S/G/Y/R/B/O NT_023451AL3553121621952971RH374166598.53    1 AL355312
S/G/Y/R/B/O NT_023451AL3553121622326531RH753416598.53    1 AL355312
S/G/Y/R/B/O NT_023451AL3553121622411231RH408256598.53    1 AL355312
S/G/Y/R/B/O NT_023451AL3553121622491831RH105366598.53    1 AL355312
S/G/Y/R/B/O NT_023451AL3553121622505591RH160696598.53    1 AL355312
S/G/Y/R/B/O NT_023451AL3553121622725731RH611856598.7466289.006811.701 AL355312
S/G/Y/R/B/O NT_023451AL3553121622725791RH164666598.74    1 AL355312
S/G/Y/R/B/O NT_023451AL5838351623664953RH923296598.74    1 AL583835
S/G/Y/R/B/O NT_023451AL3554971623990683RH1034666598.74    2 AL355497, AL355497
S/G/Y/R/B/O NT_023451AL3554971624317393RH1034666598.74    2 AL355497, AL355497
S/G/Y/R/B/O NT_023451AL3554971624914023RH179496598.74    1 AL355497
S/G/Y/R/B/O NT_023451AL3554971624917723RH409396598.53    1 AL355497
S/G/Y/R/B/O NT_023451AL1388901625996363          
S/G/Y/R/B/O NT_023451AL0967081626098803RH374156598.74    1 AF407166, AL096708
S/G/Y/R/B/O NT_023451AL0967081626155623RH374136598.84    1 AF407166, AL096708
S/G/Y/R/B/O NT_023451AL0967081626793853RH182656598.74    1 AF407166, AL096708
S/G/Y/R/B/O NT_023451AL0967081626795763RH605826598.74  6811.701 AF407166, AL096708
S/G/Y/R/B/O NT_023451AL0967081626795783RH473246598.74    1 AF407166, AL096708
S/G/Y/R/B/O NT_023451AL0967081626804183RH157976594.98    1 AF407166, AL096708
S/G/Y/R/B/O NT_023451AL0967081626804333RH160756589.78    1 AF407166, AL096708
S/G/Y/R/B/O NT_023451AL0967081626804413RH183636598.53    1 AF407166, AL096708
S/G/Y/R/B/O NT_023451AL3575611627143623          
S/G/Y/R/B/O NT_023451AL0310101627929173RH374146598.74    1 AL031010
S/G/Y/R/B/O NT_023451AL0310101628198573RH362556598.74    1 AL031010
S/G/Y/R/B/O NT_023451AL0310101628298183RH479326589.30    1 AL031010
S/G/Y/R/B/O NT_023451AL0310101628347693RH669186598.53    1 AL031010
S/G/Y/R/B/O NT_023451AL4510611628846773          
S/G/Y/R/B/O NT_023451AL4503441630321323RH607126598.84  6814.401 AC024983, AL450344
S/G/Y/R/B/O NT_023451AL4503441630321893RH164956598.74    1 AC024983, AL450344
S/G/Y/R/B/O NT_023451AL4503441630878453RH701176598.53    1 AC024983, AL450344
S/G/Y/R/B/O NT_023451AL4503441631240693RH374196598.74    1 AC024983, AL450344
S/G/Y/R/B/O NT_023451AL4503391631327063RH131696598.7466313.00  1 AL450339
S/G/Y/R/B/O NT_023451AL4503391631408903RH37859  66313.00  1 AL450339
S/G/Y/R/B/O NT_023451AL4503391631872343RH410076598.53    1 AL450339
S/G/Y/R/B/O NT_023451AL0350861632062383RH607156598.7466330.006811.701 AL035086
S/G/Y/R/B/O NT_023451AL0350861632063713RH162956598.53    1 AL035086
S/G/Y/R/B/O NT_023451AL0350861632063883RH676636598.53    1 AL035086
S/G/Y/R/B/O NT_023451AL0350861632340213WI-5215    6811.701 AL035086, AL359638
S/G/Y/R/B/O NT_023451AL0350861632719333RH373106602.80    1  
S/G/Y/R/B/O NT_023451AL0350861632721593RH1972  66340.00  1 AL359638
S/G/Y/R/B/O NT_023451AL0350861632736733RH1033996598.74    1 AL035086, AL359638
S/G/Y/R/B/O NT_023451AL0350861632737393RH609456598.74  6811.701 AL359638
S/G/Y/R/B/O NT_023451AL0350861633371103RH158236598.74    1AL049694, AL035086, AL049694, AL359638
S/G/Y/R/B/O NT_023451AL0496941633547673          
S/G/Y/R/B/O NT_023451AL1332601634568483WI-4992    6810.001 AL133260
S/G/Y/R/B/O NT_023451AL1332601635128833RH485166600.46    1 AL133260


  NT_023451 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023451AL1332601635301033RH935316600.46    1 AL133260
S/G/Y/R/B/O NT_023451AL1332601635324243RH611396600.46  6813.301 AL133260
S/G/Y/R/B/O NT_023451AL1387331635640563          
S/G/Y/R/B/O NT_023451AL4510721636295383          
S/G/Y/R/B/O NT_023451AL3565351636343513          
S/G/Y/R/B/O NT_023451AL0333921636942393RH32743  66356.00  1 AL033392
S/G/Y/R/B/O NT_023451AL0333921636944903RH158006600.46    1 AL033392
S/G/Y/R/B/O NT_023451AL0333921637026763CHLC.GATA2B06.465    6814.901 AL033392
S/G/Y/R/B/O NT_023451AL0333921637400783RH940926600.46    1 AL033392
S/G/Y/R/B/O NT_023451AL5904131637802913RH484606602.38    1 AC023201, AL590413
S/G/Y/R/B/O NT_023451AL5904131637866433RH408956600.27    1 AC023201, AL590413
S/G/Y/R/B/O NT_023451AL5904131637867803RH608556600.4666356.006813.301 AC023201, AL590413
S/G/Y/R/B/O NT_023451AL5904131637880933RH33396  66349.00  1 AC023201, AL590413
S/G/Y/R/B/O NT_023451AL5904131637880933RH607296589.58  6806.001 AC023201, AL590413
S/G/Y/R/B/O NT_023451AL5904131637885793RH609846600.4666356.006813.201 AC023201, AL590413
S/G/Y/R/B/O NT_023451AL5904131637945353RH365316600.46    1 AC023201, AL590413
S/G/Y/R/B/O NT_023451AL5905431639002223RH752136602.97    1 AC022899, AC023201, AL590543
S/G/Y/R/B/O NT_023451AL3594941640239523WI-4821    6814.901 AC022899, AC044828, AL359494
S/G/Y/R/B/O NT_023451AL3594941640502923RH659636600.16    1 AC022899, AC044828, AL359494
S/G/Y/R/B/O NT_023451AL0356951640691163          
S/G/Y/R/B/O NT_023451AL3563111641962233RH409226600.46    1 AL356311
S/G/Y/R/B/O NT_023451AL3563111642149603WI-4999    6804.901 AC058817, AL356311
S/G/Y/R/B/O NT_023451AL3563111642244003WI-5045    6813.301 AC058817, AL356311
S/G/Y/R/B/O NT_023451AL3563111642377083RH468676602.38    1 AL356311, X62462, X63118, X68051
S/G/Y/R/B/O NT_023451AL5909931642559993          
S/G/Y/R/B/O NT_023451AL0498211644423123RH131486600.46  6813.301 AL049821
S/G/Y/R/B/O NT_023451AL0498211644423123RH30584  66380.00  1 AL049821
S/G/Y/R/B/O NT_023451AL0785821645293173RH1843  66380.00  1 AL078582
S/G/Y/R/B/O NT_023451AL0785821645334073RH1036096600.46    1 AL078582, X62463
S/G/Y/R/B/O NT_023451AL0785821645521643RH13778  66380.00  1 AL078582
S/G/Y/R/B/O NT_023451AL0785821645521823RH106136603.28    1 AL078582
S/G/Y/R/B/O NT_023451AL0785821645522783RH367486604.11    1 AL078582
S/G/Y/R/B/O NT_023451AL0785821645846653RH487  66387.00  1 AL078582
S/G/Y/R/B/O NT_023451AL4504011645881843          
S/G/Y/R/B/O NT_023451AL1388321646437573RH918836600.46    1 AC024366, AL138832
S/G/Y/R/B/O NT_023451AL1388321647016333RH487776602.48    1 AC024366, AL138832, AL356480
S/G/Y/R/B/O NT_023451AL1388321647149813RH38198  66387.00  1 AC024366, AL138832
S/G/Y/R/B/O NT_023451AL1388321647150013RH660366602.48    1 AC024366, AL138832, AL356480
S/G/Y/R/B/O NT_023451AL3570811647410363RH611266600.46  6813.301 AL356480, AL357081
S/G/Y/R/B/O NT_023451AL3570811647410823RH459096600.46    1 AL356480, AL357081
S/G/Y/R/B/O NT_023451AL0495481648657323RH38112  66385.00  1 AC024370, AL049548
S/G/Y/R/B/O NT_023451AL0495481648838623RH409056602.38    1 AC024370, AL049548
S/G/Y/R/B/O NT_023451AL5915071648930193          
S/G/Y/R/B/O NT_023451AL5899631649086053          
S/G/Y/R/B/O NT_023451AL1360791649931703          
S/G/Y/R/B/O NT_023451AL3909601651541933RH766126605.44    1 AL358992, AL390960
S/G/Y/R/B/O NT_023451AL3909601651542523RH455526604.11    1 AL358992, AL390960
S/G/Y/R/B/O NT_023451AL3909601651545953RH698536605.64    1 AL358992, AL390960
S/G/Y/R/B/O NT_023451AL3909601651547453RH926016604.11    1 AL358992, AL390960
S/G/Y/R/B/O NT_023451AL1333561651898263RH691366606.23    1 AL133356, AL358992, M33027


  NT_023451 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023451AL1333561651898883RH466946604.11    1 AL133356, AL358992, M33027
S/G/Y/R/B/O NT_023451AL1333561651934673RH131316604.11  6816.501 AL133356
S/G/Y/R/B/O NT_023451AL1333561651934863RH1145  66409.00  1 AL133356, AL358992
S/G/Y/R/B/O NT_023451AL1601621651989363          
S/G/Y/R/B/O NT_023451AL1332691652826893RH375756604.11    1 AL133269, AL358992
S/G/Y/R/B/O NT_023451AL1332691653327773WI-5533    6816.501 AL133269, AL358992
S/G/Y/R/B/O NT_023451AL0802761654010333RH469156604.11    1 AL080276
S/G/Y/R/B/O NT_023451AL0802761654015523RH681136605.82    1 AL080276
S/G/Y/R/B/O NT_023451AL0802761654200223RH14737  66440.00  1 AL080276
S/G/Y/R/B/O NT_023451AL0802761654201333RH466846604.11    2 AL080276
S/G/Y/R/B/O NT_023451AL3567871654833753          
S/G/Y/R/B/O NT_023451AL3569631655280763          
S/G/Y/R/B/O NT_023451AL1219671656194453          
S/G/Y/R/B/O NT_023451AL5908671657112103          
S/G/Y/R/B/O NT_023451AL3581341657728313          
S/G/Y/R/B/O NT_023451AL1185171659233513D6S441    6816.501 AC023863
S/G/Y/R/B/O NT_023451AL3914261659938973          
S/G/Y/R/B/O NT_023451AL6039081660215333          
S/G/Y/R/B/O NT_023451AL3913761661124293          
S/G/Y/R/B/O NT_023451AL1388881662250333          
S/G/Y/R/B/O NT_023451AL1360941662470983          
S/G/Y/R/B/O NT_023451AL3598501664036653          
S/G/Y/R/B/O NT_023451AL1364441664371013          
S/G/Y/R/B/O NT_023451AL1327741665490713RH373576605.8266437.00  1 AC027439, AL132774
S/G/Y/R/B/O NT_023451AL1327741665862353RH607766605.61  6816.501 AC027439, AL132774
S/G/Y/R/B/O NT_023451AL1327741665862353RH468016604.11    1 AC027439, AL132774
S/G/Y/R/B/O NT_023451AL1327741665892733RH610886606.02  6816.501 AC027439, AC073982, AL132774
S/G/Y/R/B/O NT_023451AL1327741665893993RH466296604.11    1 AC027439, AC073982, AL132774
S/G/Y/R/B/O NT_023451AL4452201666313163          
S/G/Y/R/B/O NT_023451AL0333761667526713RH488  66443.00  1 AC073982
S/G/Y/R/B/O NT_023451AL5904011668211163          
S/G/Y/R/B/O NT_023451AL3570751668297713RH698596605.82    1 AL357075
S/G/Y/R/B/O NT_023451AL3570751668357893RH916216604.11    1 AL357075
S/G/Y/R/B/O NT_023451AL3570751668413463RH359246605.82    1 AL357075
S/G/Y/R/B/O NT_023451AL3570751668972033RH32862  66454.00  1 AL357075
S/G/Y/R/B/O NT_023451AL5914191670034493          
S/G/Y/R/B/O NT_023451AL6271081670862443GCT16F02    6816.501AL591499, AC068982, AL590707, AL591499, AL627108
S/G/Y/R/B/O NT_023451AL5914991671780943RH131496605.82    1 AL590707, AL591499
S/G/Y/R/B/O NT_023451AL5914991671780943RH33794  66450.00  1 AL590707, AL591499
S/G/Y/R/B/O NT_023451AL1369761671983783RH160826604.11    1 AL136976
S/G/Y/R/B/O NT_023451AL1219521672619103RH461426604.11    1 AL121952
S/G/Y/R/B/O NT_023451AL1219521672656253RH610136604.1166457.006816.501 AL121952
S/G/Y/R/B/O NT_023451AL1219521672707833RH926346604.11    1 AL121952
S/G/Y/R/B/O NT_023451AL1219521672721513RH605866602.69  6814.801 AL121952
S/G/Y/R/B/O NT_023451AL1219521672723083RH466386604.11    1 AL121952
S/G/Y/R/B/O NT_023451AL1219521673389373RH611786602.38  6813.201 AL121952
S/G/Y/R/B/O NT_023451AL1219521673390023RH663206604.11    1 AL121952
S/G/Y/R/B/O NT_023451AL1219521673548823RH131586605.82  6816.501 AL121952
S/G/Y/R/B/O NT_023451AL1219521673548823RH30599  66464.00  1 AL121952
S/G/Y/R/B/O NT_023451AL1362281674054143RH376046606.2366508.00  1 AL136228


  NT_023451 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023451AL5902841674497173          
S/G/Y/R/B/O NT_023451AL3553431675415463RH30985  66499.00  1 AC023567, AL355343
S/G/Y/R/B/O NT_023451AL5962021676828973RH284696605.92    1 AL353173, AL596202
S/G/Y/R/B/O NT_023451AL5962021676877713RH920666607.94    1AL139101, AL139101, AL353173, AL596202
S/G/Y/R/B/O NT_023451AL5962021676880603RH157966606.23    1AL139101, AL139101, AL353173
S/G/Y/R/B/O NT_023451AL5962021676881123RH256236606.23    1AL139101, AL139101, AL353173
S/G/Y/R/B/O NT_023451AL1391011676923683RH657756604.11    1 AL139101, AL353173
S/G/Y/R/B/O NT_023451AL1391011677415873RH158686606.23    1 AL139101, AL353173, AL355359
S/G/Y/R/B/O NT_023451AL0317731678616433RH424386607.94  6818.001 AL355359
S/G/Y/R/B/O NT_023451AL0317731678617183RH493  66492.00  1 AL031773, AL355359
S/G/Y/R/B/O NT_023451AL1334741679001403WI-9856    6818.001 AL133474
S/G/Y/R/B/O NT_023451AL5916031679951083          
S/G/Y/R/B/O NT_023451AL5124101681026942RH1043096620.63    1 AC026098, AL512410
S/G/Y/R/B/O NT_023451AL5125101682868113RH426386610.37    1 AL512510
S/G/Y/R/B/O NT_023451AL5838611683591943          
S/G/Y/R/B/O NT_023451AL5896931685563301AFMA103YA5    6821.401 AC018421, AL589693
S/G/Y/R/B/O NT_023451AL5124541685927533          
S/G/Y/R/B/O NT_023451AL5132641686923693          
S/G/Y/R/B/O NT_023451AL5126581687822843          
S/G/Y/R/B/O NT_023451AL1580331689552873          
S/G/Y/R/B/O NT_023451AL3552971690839633RH30986  66523.00  1 AL355297
S/G/Y/R/B/O NT_023451AL3552971692133183RH606376610.27  6820.301 AC058792, AL355297
S/G/Y/R/B/O NT_023451AL3552971692134513RH466516610.27    1 AC058792, AL355297
S/G/Y/R/B/O NT_023451AL1625781692356363RH687436607.84    1 AC058792, AL162578
S/G/Y/R/B/O NT_023451AL1625781692356753RH639836610.2766536.006821.401 AC058792, AL162578
S/G/Y/R/B/O NT_023451AL1625781692824493SGC36816    6820.301 AC024408, AC058792, AL162578
S/G/Y/R/B/O NT_023451AL1625781693490693RH460346610.37    1 AC024408, AC058792, AL162578
S/G/Y/R/B/O NT_023451AL1625781693836243RH605516610.37  6821.501 AC024408, AL162578
S/G/Y/R/B/O NT_023451AL1625781693836323RH468246610.16    1 AC024408, AL162578
S/G/Y/R/B/O NT_023451AL1360911694074103          
S/G/Y/R/B/O NT_023451AL0498201694437693RH687986610.37    1 AL049820
S/G/Y/R/B/O NT_023451AL0498201694447653RH637266610.16    1 AL049820
S/G/Y/R/B/O NT_023451AL0498201694571463RH609196604.62  6819.701 AL049820
S/G/Y/R/B/O NT_023451AL0498201694571463RH32072  66640.00  1 AL049820
S/G/Y/R/B/O NT_023451AL0498201694571793RH468586610.16    1 AL049820
S/G/Y/R/B/O NT_023451AL0498201695178733RH612256612.08  6823.101 AL049820
S/G/Y/R/B/O NT_023451AL0498201695299443RH686946610.37    1 AL049820
S/G/Y/R/B/O NT_023451AL0498201696002753RH639746612.08  6823.101 AL049820
S/G/Y/R/B/O NT_023451AL0498201696003613RH673516611.91    1 AL049820
S/G/Y/R/B/O NT_023451AL0498201696023233RH689466612.08    1 AL049820
S/G/Y/R/B/O NT_023451AL5915451696392513RH409936611.91    1 AL591545
S/G/Y/R/B/O NT_023451AL5915451696393133RH408286611.91    1 AL591545
S/G/Y/R/B/O NT_023451AC0217451696502701          
S/G/Y/R/B/O NT_023451 - RH1021966602.38    0  
S/G/Y/R/B/O NT_023451 - RH14033  66460.00  1AL023584, AF153836, AL023584, M60119
S/G/Y/R/B/O NT_023451 - RH161726610.27    0AC004584, AC090096, AC103590, AL121759, AL162578, AL445435, AL513331, AL592166, AL606516, AC004584, AC012440, AC016519, AC024408, AC090096, AC103590, AL121759, AL162578, AL355801, AL445435, AL513331, AL592166, AL606516, AL611928
S/G/Y/R/B/O NT_023451 - RH14489  66460.00  1AL033522, AL033522, AL355489
S/G/Y/R/B/O NT_023451 - RH409166600.46    0AL133260, AL133260
S/G/Y/R/B/O NT_023451 - RH32750  66384.00  1AL049844, AL049844
S/G/Y/R/B/O NT_023451 - RH450226611.71    0  


  NT_023451 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023451 - RH33055  66352.00  1AL031320, AC009472, AL031320
S/G/Y/R/B/O NT_023451 - RH473856611.71    0  
S/G/Y/R/B/O NT_023451 - RH37893  66369.00  1AL360007, AL360007
S/G/Y/R/B/O NT_023451 - RH477116604.05    0  
S/G/Y/R/B/O NT_023451 - RH38104  66352.00  1 AC009472
S/G/Y/R/B/O NT_023451 - RH701336610.16    0  
S/G/Y/R/B/O NT_023451 - RH38282  66352.00  1AL024474, AL024474
S/G/Y/R/B/O NT_023451 - RH918956602.48    0AL357081, AL357081