Chromosome 6 - RH Maps - Single Contig

Chromosome 6 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033125	NT_033164	NT_033126	NT_033128	NT_033144	NT_033156	NT_033142	NT_033120
NT_033135	NT_033151	NT_033162	NT_033163	NT_033143	NT_033124	NT_033129	NT_033138
NT_033159	NT_026313	NT_033155	NT_033173	NT_033140	NT_033153	NT_023442	NT_033146
NT_033136	NT_033149	NT_033154	NT_033160	NT_033134	NT_029317	NT_007592	NT_033137
NT_033139	NT_033147	NT_033158	NT_033161	NT_033145	NT_033141	NT_033123	NT_033130
NT_033127	NT_033122	NT_033152	NT_033121	NT_033148	NT_033171	NT_033132	NT_033943
NT_033172	NT_033948	NT_033131	NT_033946	NT_007540	NT_023463	NT_007158	NT_029990
NT_023399	NT_033133	NT_007299	NT_019424	NT_007563	NT_033944	NT_033947	NT_030710
NT_025741	NT_027046	NT_023451	NT_029991	NT_007422	NT_007302	NT_007627	NT_007583

NT_027046

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_027046	AL359252	161175022	3	RH60628	6	594.98			6	809.40	1		AC023089, AL359252
S/G/Y/R/B/O	NT_027046	AL359252	161175272	3	RH46094	6	594.98					1		AC023089, AL359252
S/G/Y/R/B/O	NT_027046	AL359252	161249446	3	RH37608	6	594.98	6	6248.00			1		AC023089, AL359252
S/G/Y/R/B/O	NT_027046	AL589705	161309291	3
S/G/Y/R/B/O	NT_027046	AL590485	161323106	3
S/G/Y/R/B/O	NT_027046	AL357992	161409540	3	RH92645	6	594.87					1		AL357992
S/G/Y/R/B/O	NT_027046	AL357992	161459040	3	RH9870	6	595.53					1		AL357992
S/G/Y/R/B/O	NT_027046	AL603766	161488416	3
S/G/Y/R/B/O	NT_027046	AL031056	161627353	3	RH94320	6	596.81					1		AC016733, AL031056
S/G/Y/R/B/O	NT_027046	AL031056	161640415	3	RH37652	6	596.91					1		AC016733, AL031056
S/G/Y/R/B/O	NT_027046	AL138727	161693286	3
S/G/Y/R/B/O	NT_027046	AL139103	161761210	3	RH75311	6	598.74					1		AL139103
S/G/Y/R/B/O	NT_027046	AL031133	161777222	3	RH68634	6	596.91					1		AL031133
S/G/Y/R/B/O	NT_027046	AL031133	161792214	3	RH64007	6	596.91					1		AL031133
S/G/Y/R/B/O	NT_027046	AL031133	161792214	3	SGC32740					6	806.50	1		AL031133
S/G/Y/R/B/O	NT_027046	AL031133	161792706	3	RH16083	6	591.03					1		AL031133
S/G/Y/R/B/O	NT_027046	AL031133	161792971	3	RH75674	6	602.87					1		AL031133
S/G/Y/R/B/O	NT_027046	AL031133	161793402	3	RH60928	6	598.74			6	813.40	1		AL031133
S/G/Y/R/B/O	NT_027046	AL031133	161793452	3	RH17819	6	596.91					1		AL031133
S/G/Y/R/B/O	NT_027046	AL031133	161793517	3	RH66149	6	596.81					1		AL031133
S/G/Y/R/B/O	NT_027046	AL031133	161832341	3	WI-5061					6	812.20	1		AL031133
S/G/Y/R/B/O	NT_027046	AL357619	161876990	3
S/G/Y/R/B/O	NT_027046	AL078581	161945940	3	RH92502	6	591.03					2	AL583963,	AL078581, AL583963
S/G/Y/R/B/O	NT_027046	AL078581	161973013	3	RH27155	6	597.01					1		AL078581
S/G/Y/R/B/O	NT_027046	AL078581	161973524	3	RH46571	6	596.81					1		AL078581
S/G/Y/R/B/O	NT_027046	AL078581	161976368	3	RH61025	6	596.81			6	810.40	1	AL031228,	AB022537, AC040962, AL031228, AL078581, AL662820, AL662827, AL713971
S/G/Y/R/B/O	NT_027046	AL078581	161977126	3	RH63988	6	596.81	6	6272.00	6	810.40	1		AL078581
S/G/Y/R/B/O	NT_027046		-		RH15858	6	596.81					0
S/G/Y/R/B/O	NT_027046		-		RH40996	6	596.91					0
S/G/Y/R/B/O	NT_027046		-		RH40997	6	596.91					0
S/G/Y/R/B/O	NT_027046		-		RH46515	6	594.87					0
S/G/Y/R/B/O	NT_027046		-		RH46830	6	596.81					0
S/G/Y/R/B/O	NT_027046		-		RH70360	6	596.81					0