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  Chromosome 6 - RH Maps - Single Contig
 

Chromosome 6 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033125 NT_033164 NT_033126 NT_033128 NT_033144 NT_033156 NT_033142 NT_033120
NT_033135 NT_033151 NT_033162 NT_033163 NT_033143 NT_033124 NT_033129 NT_033138
NT_033159 NT_026313 NT_033155 NT_033173 NT_033140 NT_033153 NT_023442 NT_033146
NT_033136 NT_033149 NT_033154 NT_033160 NT_033134 NT_029317 NT_007592 NT_033137
NT_033139 NT_033147 NT_033158 NT_033161 NT_033145 NT_033141 NT_033123 NT_033130
NT_033127 NT_033122 NT_033152 NT_033121 NT_033148 NT_033171 NT_033132 NT_033943
NT_033172 NT_033948 NT_033131 NT_033946 NT_007540 NT_023463 NT_007158 NT_029990
NT_023399 NT_033133 NT_007299 NT_019424 NT_007563 NT_033944 NT_033947 NT_030710
NT_025741 NT_027046 NT_023451 NT_029991 NT_007422 NT_007302 NT_007627 NT_007583


  NT_019424
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_019424AC0682361075676571          
S/G/Y/R/B/O NT_019424AC0157601076213211          
S/G/Y/R/B/O NT_019424AC0801751077349822          
S/G/Y/R/B/O NT_019424AC0215951078809691          
S/G/Y/R/B/O NT_019424AL6718841078923463          
S/G/Y/R/B/O NT_019424AL6070771079976183          
S/G/Y/R/B/O NT_019424AL3907891081710843          
S/G/Y/R/B/O NT_019424AL0343481082964213          
S/G/Y/R/B/O NT_019424AL1391081084168353          
S/G/Y/R/B/O NT_019424AL5124471084472793          
S/G/Y/R/B/O NT_019424AL5124061085492653          
S/G/Y/R/B/O NT_019424AL4996261086294123          
S/G/Y/R/B/O NT_019424AL0213671087385203RH654486427.27    1 AL021367
S/G/Y/R/B/O NT_019424AL0213671087440143CHLC.GATA27C07    6632.701 AL021367
S/G/Y/R/B/O NT_019424AL0213671087740853WI-4329    6642.801 AL021367
S/G/Y/R/B/O NT_019424AL5904041088122193          
S/G/Y/R/B/O NT_019424AL1327761089365233RH707496427.11    1 AL132776
S/G/Y/R/B/O NT_019424AL1327761089366683RH788516428.71    1 AL132776
S/G/Y/R/B/O NT_019424AL1327761089980143RH926826427.75    1AC048370, AC048370, AL132776
S/G/Y/R/B/O NT_019424AL3551431090118743          
S/G/Y/R/B/O NT_019424AL0333791090743543          
S/G/Y/R/B/O NT_019424AL1599851092712143RH1021316415.80    3AC002076, AC013452, AC036102, AC002076, AC013452, AC036102, AC084370, AL159985, AL162577
S/G/Y/R/B/O NT_019424AL1599851092726293RH409726430.50    1 AL159985, AL162577
S/G/Y/R/B/O NT_019424AL0333751092964353          
S/G/Y/R/B/O NT_019424AL3569581094471243          
S/G/Y/R/B/O NT_019424AL0236561094964103RH374426431.20    1 AL023656
S/G/Y/R/B/O NT_019424AL0236561095212773RH640066431.20  6629.201 AL023656
S/G/Y/R/B/O NT_019424AL0236561095221503RH409546431.10    1 AL023656
S/G/Y/R/B/O NT_019424AL5904841096347703RH1024236431.20    1 AL590484
S/G/Y/R/B/O NT_019424AL5904841096425713RH943676434.35    1 AL590484
S/G/Y/R/B/O NT_019424AL3536791096512793          
S/G/Y/R/B/O NT_019424Z847191097653083CHLC.GATA5C03.939    6634.901 AC021806, Z84719
S/G/Y/R/B/O NT_019424AL3588731098752003          
S/G/Y/R/B/O NT_019424AL5962081099662293          
S/G/Y/R/B/O NT_019424AL0803161100902753RH466406430.19    1 AL080316
S/G/Y/R/B/O NT_019424AL0803161100903433RH607866430.68  6630.801 AL080316
S/G/Y/R/B/O NT_019424AL0803161100945983RH606226436.57  6629.401 AL080316
S/G/Y/R/B/O NT_019424AL0803161100955673RH985856456.96    1 AL080316
S/G/Y/R/B/O NT_019424AL3571241101821623          
S/G/Y/R/B/O NT_019424AL5902391103021013          
S/G/Y/R/B/O NT_019424AL5911021104293173          
S/G/Y/R/B/O NT_019424AL5907271105094293RH473416434.25    1 AL590727
S/G/Y/R/B/O NT_019424AL5907271105131883RH609576434.25  6628.601 AC023995, AL590727
S/G/Y/R/B/O NT_019424AL5907271105134293RH466456434.35    1 AC023995, AL590727
S/G/Y/R/B/O NT_019424AL5897401105989312          
S/G/Y/R/B/O NT_019424AL6070711107866943          
S/G/Y/R/B/O NT_019424Z844821108567003          
S/G/Y/R/B/O NT_019424AL5903951109402903          
S/G/Y/R/B/O NT_019424AL5898261110949373          
S/G/Y/R/B/O NT_019424AL0223951112177713WI-19206    6635.801 AL022395, L37868


  NT_019424 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_019424AL0223951112177713RH608886457.66    1 AL022395, L37868
S/G/Y/R/B/O NT_019424AL0223951112188223RH122976434.25    1 AL022395
S/G/Y/R/B/O NT_019424AL0223951112200773WI-22176    6649.001 AL022395
S/G/Y/R/B/O NT_019424AL0223951112204083RH930096431.10    1 AL022395
S/G/Y/R/B/O NT_019424AL0223951112503923RH1035246434.25    1 AL022395
S/G/Y/R/B/O NT_019424AL0223951112550913RH933246431.10    1 AL022395
S/G/Y/R/B/O NT_019424AL0223951112555273RH610556431.71  6634.901 AL022395
S/G/Y/R/B/O NT_019424AL0223951112562163RH924656459.02    1 AL022395
S/G/Y/R/B/O NT_019424AL0223951112566743RH685186434.25    1 AL022395
S/G/Y/R/B/O NT_019424AL0223951113063113RH452186434.25    1 AL022395
S/G/Y/R/B/O NT_019424AL0223951113222033RH42902  64593.00  1 AL022395
S/G/Y/R/B/O NT_019424AL0786031113397163          
S/G/Y/R/B/O NT_019424AL5900221114899713          
S/G/Y/R/B/O NT_019424AL5918031115569493RH942796457.14    1 AL591803
S/G/Y/R/B/O NT_019424AL5918031115570233RH809394497.74    2AC097485, AC097485
S/G/Y/R/B/O NT_019424AL5918031115589693RH919164494.25    2AC097485, AC009271, AC097485
S/G/Y/R/B/O NT_019424AL5918031116067023RH421016434.2564600.00  1 AL591803
S/G/Y/R/B/O NT_019424AL0343711116558023RH255146434.15    1 AL034371
S/G/Y/R/B/O NT_019424AL0343711116617273RH266836436.28    1 AL034371
S/G/Y/R/B/O NT_019424AL0343711116622403RH607266434.45  6629.001 AL034371
S/G/Y/R/B/O NT_019424AL5135501117511723RH929846434.25    1 AL513550
S/G/Y/R/B/O NT_019424AL5135501117827493RH8003  64621.00  1 AL513550
S/G/Y/R/B/O NT_019424AL5135501117827563RH467846459.02    1 AL513550
S/G/Y/R/B/O NT_019424AL5135501117898313RH463686459.02    1 AL513550
S/G/Y/R/B/O NT_019424AL5135501117933783RH467226459.12    1  
S/G/Y/R/B/O NT_019424AL5135501118142823RH184556434.25    1 AL513550
S/G/Y/R/B/O NT_019424AL5135501118158093RH161176434.25    1 AL513550
S/G/Y/R/B/O NT_019424AL5135501118169123RH928896434.25    1 AL513550
S/G/Y/R/B/O NT_019424AL5135501118614643RH37916  64583.00  1 AL513550
S/G/Y/R/B/O NT_019424AL1377841119196753RH1043976434.35    1 AL137784
S/G/Y/R/B/O NT_019424AL1377841119241253RH33208  64578.00  1 AL137784, AL357622
S/G/Y/R/B/O NT_019424AL1377841119241363RH779196431.10    1 AL137784, AL357622
S/G/Y/R/B/O NT_019424AL1377841119242393RH783386434.25    1 AL137784, AL357622
S/G/Y/R/B/O NT_019424AL1377841119248903RH177366434.25    1 AL137784, AL357622
S/G/Y/R/B/O NT_019424AL1377841119460563RH637086459.08    1 AC025216, AL137784, AL357622
S/G/Y/R/B/O NT_019424AL0350871119914663          
S/G/Y/R/B/O NT_019424AL3909591121113163          
S/G/Y/R/B/O NT_019424AL5907251122164553          
S/G/Y/R/B/O NT_019424AL6039091123943423          
S/G/Y/R/B/O NT_019424AL5907321123958433          
S/G/Y/R/B/O NT_019424AL0802851124891043RH375936439.46    1 AL080285
S/G/Y/R/B/O NT_019424AL0802851125377413CHLC.GATA44.108    6671.201 AL080285
S/G/Y/R/B/O NT_019424AL5838221126356383          
S/G/Y/R/B/O NT_019424AL1219481127621523          
S/G/Y/R/B/O NT_019424Z860621128897823RH679706439.67    1 AC026619, Z86062
S/G/Y/R/B/O NT_019424Z860621128903043RH610306452.01  6671.401 AC026619, Z86062
S/G/Y/R/B/O NT_019424Z860621128903753RH651826450.34    1 AC026619, Z86062
S/G/Y/R/B/O NT_019424Z860621129020233RH372226452.40  6655.701 AC026619, Z86062
S/G/Y/R/B/O NT_019424Z860621129020333RH99596439.67    1 AC026619, Z86062
S/G/Y/R/B/O NT_019424AL5132071129589113          


  NT_019424 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_019424AL1219651129702933          
S/G/Y/R/B/O NT_019424AL5915851130832153          
S/G/Y/R/B/O NT_019424AL3561221131231083          
S/G/Y/R/B/O NT_019424AL1333381131939633          
S/G/Y/R/B/O NT_019424AL1617201133141773          
S/G/Y/R/B/O NT_019424AL1099341133913173RH654396442.36    1 AL109934, AL356434
S/G/Y/R/B/O NT_019424AL4504271134357723          
S/G/Y/R/B/O NT_019424AL1604041135045153          
S/G/Y/R/B/O NT_019424AL3652761135640143D6S468    6673.701 AL365276
S/G/Y/R/B/O NT_019424AL3652761135640143RH501  64662.00  1 AL365276
S/G/Y/R/B/O NT_019424AP0025281137785423RH604996450.76  6666.401 AB041511, AC013311, AL356861, AP002528
S/G/Y/R/B/O NT_019424AP0025281137802353RH161296445.39    1 AB041511, AC013311, AL356861, AP002528
S/G/Y/R/B/O NT_019424AP0025281138346963RH921636452.52    1 AB041511, AB041731, AC013311, AL356861, AL357058, AP002528
S/G/Y/R/B/O NT_019424AP0025291140568203D6S449    6674.901 AB042031, AL356438, AP002529
S/G/Y/R/B/O NT_019424AP0025291140568203RH954  64679.00  1 AB042031, AL356438, AP002529
S/G/Y/R/B/O NT_019424AP0025291141011093RH606916449.92  6670.001 AB042031, AL139104, AP002529
S/G/Y/R/B/O NT_019424AP0025291141012723RH466286451.35    1 AB042031, AL139104, AP002529
S/G/Y/R/B/O NT_019424AP0025301142934853RH65366447.02  6674.901 AL359174
S/G/Y/R/B/O NT_019424AP0025301142934853RH759  64716.00  1 AL359174
S/G/Y/R/B/O NT_019424AP0025301143696843RH131616444.99    1 AB042030, AL355532, AP002530
S/G/Y/R/B/O NT_019424AP0025301143696843RH30576  64709.00  1 AB042030, AL355532, AP002530
S/G/Y/R/B/O NT_019424AP0025301144513693RH408416446.92    1 AB041340, AL355532, AP002530
S/G/Y/R/B/O NT_019424AP0025311145107133          
S/G/Y/R/B/O NT_019424AL5922981146801873AFMA084ZE9    6677.201 AL592298
S/G/Y/R/B/O NT_019424AL3571391147142913          
S/G/Y/R/B/O NT_019424AL3575061148407133          
S/G/Y/R/B/O NT_019424 - RH126856431.20    0  
S/G/Y/R/B/O NT_019424 - D6S424    6638.301 AC025601
S/G/Y/R/B/O NT_019424 - RH374296427.75    0AC068236, AC068236
S/G/Y/R/B/O NT_019424 - WI-6133    6638.300  
S/G/Y/R/B/O NT_019424 - RH410556439.67    0AL080285, AC002402, AL080285
S/G/Y/R/B/O NT_019424 - WI-3031    6648.901AL121964, AC025387, AL121964, AL161435
S/G/Y/R/B/O NT_019424 - RH985096427.32    0  
S/G/Y/R/B/O NT_019424 - CHLC.GATA6B06.192    6661.001AL591076, AL591076
S/G/Y/R/B/O NT_019424 - SGC30691    6661.201AL024507, AC068232, AL024507
S/G/Y/R/B/O NT_019424 - WI-4519    6662.101AL357315, AL357315
S/G/Y/R/B/O NT_019424 - WI-17036    6662.401AL390074, AC021808, AC025397, AL390074