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  Chromosome 4 - RH Maps - Single Contig
 

Chromosome 4 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_026996 NT_006111 NT_022865 NT_006081 NT_033075 NT_029956 NT_006051 NT_033060
NT_033064 NT_006362 NT_006307 NT_006342 NT_029958 NT_016407 NT_033056 NT_030649
NT_006344 NT_023072 NT_033076 NT_006350 NT_006285 NT_006316 NT_023052 NT_006189
NT_022794 NT_006305 NT_022751 NT_022995 NT_033067 NT_006098 NT_029274 NT_033069
NT_016297 NT_022782 NT_033059 NT_006238 NT_022831 NT_022853 NT_022850 NT_022778
NT_022852 NT_033063 NT_022813 NT_022836 NT_022862 NT_006303 NT_030640 NT_033073
NT_006281 NT_006216 NT_033072 NT_022760 NT_006109 NT_006328 NT_022844 NT_030642
NT_006114 NT_030659 NT_006204 NT_033074 NT_023068 NT_006201 NT_006383 NT_006397
NT_033061 NT_033068 NT_006365 NT_028147 NT_028173 NT_006371 NT_025694 NT_031780
NT_016599 NT_031781 NT_016354 NT_033055 NT_033062 NT_033065 NT_006167 NT_006302
NT_022755 NT_022753 NT_022803 NT_022846 NT_022856 NT_022805 NT_022819 NT_022845
NT_006124 NT_022811 NT_006127 NT_006258 NT_016606 NT_029950 NT_028160 NT_029954
NT_022851 NT_022832 NT_015169 NT_006129 NT_022740 NT_029955 NT_022801 NT_022824
NT_006171 NT_022776 NT_022768 NT_006198 NT_006257 NT_022775 NT_006118 NT_022792
NT_006256 NT_006169 NT_022841 NT_033070 NT_022800 NT_033066 NT_033071 NT_028146
NT_029961 NT_025688


  NT_006383
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006383AC098674986576781          
S/G/Y/R/B/O NT_006383AP002022988322823RH33775  45668.00  1AC098674, AP002023, AC098674, AP002022, AP002023
S/G/Y/R/B/O NT_006383AP002022988323303RH171874489.89    1AC098674, AP002023, AC098674, AP002022, AP002023
S/G/Y/R/B/O NT_006383AP002022988332213RH929854489.89    1AC098674, AP002023, AC098674, AP002022, AP002023
S/G/Y/R/B/O NT_006383AP002023988834893WI-4262    4533.901AC098487, AC098487, AP002023
S/G/Y/R/B/O NT_006383AC098487989041853RH655814494.25    1 AC098487
S/G/Y/R/B/O NT_006383AC098487989893653RH414194494.25    1 AC098487, AP002019
S/G/Y/R/B/O NT_006383AF213884991448263WI-17940    4528.501AC021120, AC021120, AF213884
S/G/Y/R/B/O NT_006383AF213884991448263RH593984494.8445681.00  1AC021120, AC021120, AF213884
S/G/Y/R/B/O NT_006383AF213884991504463RH469164494.25    1AC021120, AC021120, AF213884
S/G/Y/R/B/O NT_006383AF213884991574873RH260024494.53    1AC021120, AC021120, AF213884, Z47735
S/G/Y/R/B/O NT_006383AF213884991587383WI-18502    4533.901AC021120, AC021120, AF213884, Z47735
S/G/Y/R/B/O NT_006383AF213884991587383RH593174494.2545684.00  1AC021120, AC021120, AF213884, Z47735
S/G/Y/R/B/O NT_006383AF213884991588063RH118974494.25    1AC021120, AC021120, AF213884, Z47735
S/G/Y/R/B/O NT_006383AF213884991724283SGC34730    4533.901AC021120, AC021120, AF213884
S/G/Y/R/B/O NT_006383AF213884991724283RH596084494.25    1AC021120, AC021120, AF213884
S/G/Y/R/B/O NT_006383AF213884991724863RH161944489.79    1AC021120, AC021120, AF213884
S/G/Y/R/B/O NT_006383AF213884991870693SGC44601    4533.901AC021120, AC021120, AF213884
S/G/Y/R/B/O NT_006383AF213884991870693RH595594494.25    1AC021120, AC021120, AF213884
S/G/Y/R/B/O NT_006383AF213884991872113WI-7764    4533.901AC021120, AC021120, AF213884
S/G/Y/R/B/O NT_006383AF213884991872113RH591834494.2545684.00  1AC021120, AC021120, AF213884
S/G/Y/R/B/O NT_006383AC021120992021763RH360114489.79    1AF224669, AC021120, AF224669
S/G/Y/R/B/O NT_006383AC021120992211843RH286674494.25    1AF224669, AC021120, AF224669
S/G/Y/R/B/O NT_006383AF224669993058943RH1062620209.07    2AC018797, AL034422, AC018797, AC024629, AF224669, AL034422, AP002018
S/G/Y/R/B/O NT_006383AF224669993810423RH413094489.89    1AC018797, AC018797, AC024629, AF224669, AP002018
S/G/Y/R/B/O NT_006383AF224669993810443RH809654496.89    1AC018797, AC018797, AC024629, AF224669, AP002018
S/G/Y/R/B/O NT_006383AF224669993852853RH456414494.84    1 AC024629, AF224669, AP002018
S/G/Y/R/B/O NT_006383AF224669994207413RH779604494.25    1AC018797, AC018797, AC080124, AF224669
S/G/Y/R/B/O NT_006383AF224669994588043SGC38381    4533.902AC018797, AC018797, AC080124, AF224669, AP001860
S/G/Y/R/B/O NT_006383AF224669994588043RH591624494.25    2AC018797, AC018797, AC080124, AF224669, AP001860
S/G/Y/R/B/O NT_006383AF224669994591793RH595164496.79  4539.603AC018797, AC018797, AC080124, AF224669, AP001860
S/G/Y/R/B/O NT_006383AC018797994626963          
S/G/Y/R/B/O NT_006383AC083826994650483          
S/G/Y/R/B/O NT_006383AC097485995932593WI-18304    4526.801 AC097485
S/G/Y/R/B/O NT_006383AC097485995932593RH590744494.74    1 AC097485
S/G/Y/R/B/O NT_006383AC097485995966123RH919014494.25    1 AC097485
S/G/Y/R/B/O NT_006383AC097485995971893WI-13405    4533.901 AC097485
S/G/Y/R/B/O NT_006383AC097485995971893RH590424494.25    1 AC097485
S/G/Y/R/B/O NT_006383AC097485996486683RH919164494.25    2 AC009271, AC097485
S/G/Y/R/B/O NT_006383AC097485996505003RH809394497.74    2 AC097485
S/G/Y/R/B/O NT_006383AC097485996567323RH413824489.89    1 AC097485
S/G/Y/R/B/O NT_006383AC079919996770453WI-6987    4533.901 AC079919, AC084074
S/G/Y/R/B/O NT_006383AC079919996770453RH594804494.2549287.00  1 AC079919, AC084074
S/G/Y/R/B/O NT_006383AC079919996771333RH414474489.89    1 AC079919, AC084074
S/G/Y/R/B/O NT_006383AC079919997537083RH413104489.89    1 AC079919
S/G/Y/R/B/O NT_006383AC096671998392913          
S/G/Y/R/B/O NT_006383AC113609999786951RH782004495.85    2AC067792, AC067792
S/G/Y/R/B/O NT_006383AC0677921013847421RH782004495.85    2 AC067792
S/G/Y/R/B/O NT_006383AC104693999957371          
S/G/Y/R/B/O NT_006383AC0950621001349353RH921474494.74    1AC104693, AC023853, AC095062, AC104693


  NT_006383 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006383AP0020751002594573RH30874  45692.00  1 AP002075
S/G/Y/R/B/O NT_006383AC1099281003120773          
S/G/Y/R/B/O NT_006383AC0936941003352643          
S/G/Y/R/B/O NT_006383AC0842771004918303          
S/G/Y/R/B/O NT_006383AC0838511006425351          
S/G/Y/R/B/O NT_006383AC0916011007562221          
S/G/Y/R/B/O NT_006383AC0137851008022291          
S/G/Y/R/B/O NT_006383AC0936531008200331          
S/G/Y/R/B/O NT_006383AC0936871008389261          
S/G/Y/R/B/O NT_006383AP0018161008601353RH413534492.11    1AC013785, AC091601, AC093653, AC013785, AC091601, AC093653, AP001963
S/G/Y/R/B/O NT_006383AP0018161008602713RH989344494.25    1AC013785, AC091601, AC093653, AC093687, AC013785, AC091601, AC093653, AC093687, AP001816, AP001963
S/G/Y/R/B/O NT_006383AP0018161009167563RH29126  45632.00  1 AP001816
S/G/Y/R/B/O NT_006383AP0019391009513653RH488104494.25    1AC013785, AC093653, AC093687, AP001816, AC013785, AC093653, AC093687, AP001816, AP001939, AP002017
S/G/Y/R/B/O NT_006383AP0019391009620253RH666464494.53    1AC013785, AC093653, AC093687, AP001816, AC013785, AC093653, AC093687, AP001816, AP001939, AP002017
S/G/Y/R/B/O NT_006383AC0926711010449023          
S/G/Y/R/B/O NT_006383AP0018701011771873WI-18296    4527.301AC090417, AC092671, AC090417, AC092671, AP001870, AP001965
S/G/Y/R/B/O NT_006383AP0018701011771873RH592204489.17    1AC090417, AC092671, AC090417, AC092671, AP001870, AP001965
S/G/Y/R/B/O NT_006383AP0018701011831533RH758364496.83    1AC090417, AC092671, AC090417, AC092671, AP001870, AP001965
S/G/Y/R/B/O NT_006383AP0018701011831553WI-18743    4534.001AC090417, AC092671, AC090417, AC092671, AP001870, AP001965
S/G/Y/R/B/O NT_006383AP0018701011831553RH593764494.02    1AC090417, AC092671, AC090417, AC092671, AP001870, AP001965
S/G/Y/R/B/O NT_006383AP0018701011837013WI-16419    4527.201AC090417, AC092671, AC090417, AC092671, AP001870, AP001965
S/G/Y/R/B/O NT_006383AP0018701011837013RH591844494.64    1AC090417, AC092671, AC090417, AC092671, AP001870, AP001965
S/G/Y/R/B/O NT_006383AP0018701011850393WI-20975    4534.001AC090417, AC092671, AC090417, AC092671, AP001870, AP001965
S/G/Y/R/B/O NT_006383AP0018701011850393RH592434494.02    1AC090417, AC092671, AC090417, AC092671, AP001870, AP001965
S/G/Y/R/B/O NT_006383AP0018701011853243RH474274494.02    1AC090417, AC092671, AC090417, AC092671, AP001870, AP001965
S/G/Y/R/B/O NT_006383AP0019641012794833          
S/G/Y/R/B/O NT_006383AC0258521013742221          
S/G/Y/R/B/O NT_006383AC0904171013745841          
S/G/Y/R/B/O NT_006383AC0097941013757631          
S/G/Y/R/B/O NT_006383AP0019381013949561          
S/G/Y/R/B/O NT_006383AC1093461014154381          
S/G/Y/R/B/O NT_006383AC1054601015541133WI-18877    4535.501 AC105460, AC112244, AL133554, AP002739, AP002741, X65176
S/G/Y/R/B/O NT_006383AC1054601015541133RH595924495.85    1 AC105460, AC112244, AL133554, AP002739, AP002741, X65176
S/G/Y/R/B/O NT_006383AC1054601016287193WI-4481    4535.501 AC105460, AC112244, AP002739, AP002741
S/G/Y/R/B/O NT_006383AC0040651016807493AFMA070TH5    4537.001 AC004065, AC112244
S/G/Y/R/B/O NT_006383AC0040651016838423RH708654497.63    1 AC004065, AC112244, X65172
S/G/Y/R/B/O NT_006383AC0040471017966213          
S/G/Y/R/B/O NT_006383AC0743491019025723          
S/G/Y/R/B/O NT_006383AC0986781020232283          
S/G/Y/R/B/O NT_006383AC0740881021150403RH655984498.90    1 AC074088
S/G/Y/R/B/O NT_006383AC0040521021818683          
S/G/Y/R/B/O NT_006383AC1147581023363641          
S/G/Y/R/B/O NT_006383 - WI-20346    4525.900AL080250, AF134406, AL080250
S/G/Y/R/B/O NT_006383 - WI-17058    4526.001AC022570, AC023177, AC097656, AC022570, AC023177, AC097656, AC098584
S/G/Y/R/B/O NT_006383 - CHLC.GATA25A01    4527.901AC093776, AC016078, AC093776, AP002742
S/G/Y/R/B/O NT_006383 - CHLC.GATA82D12    4532.800  
S/G/Y/R/B/O NT_006383 - WI-16371    4532.801AC097459, AC097459
S/G/Y/R/B/O NT_006383 - D4S421    4534.001AC105763, AC105763