Chromosome 4 - RH Maps - Single Contig

Chromosome 4 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_026996	NT_006111	NT_022865	NT_006081	NT_033075	NT_029956	NT_006051	NT_033060
NT_033064	NT_006362	NT_006307	NT_006342	NT_029958	NT_016407	NT_033056	NT_030649
NT_006344	NT_023072	NT_033076	NT_006350	NT_006285	NT_006316	NT_023052	NT_006189
NT_022794	NT_006305	NT_022751	NT_022995	NT_033067	NT_006098	NT_029274	NT_033069
NT_016297	NT_022782	NT_033059	NT_006238	NT_022831	NT_022853	NT_022850	NT_022778
NT_022852	NT_033063	NT_022813	NT_022836	NT_022862	NT_006303	NT_030640	NT_033073
NT_006281	NT_006216	NT_033072	NT_022760	NT_006109	NT_006328	NT_022844	NT_030642
NT_006114	NT_030659	NT_006204	NT_033074	NT_023068	NT_006201	NT_006383	NT_006397
NT_033061	NT_033068	NT_006365	NT_028147	NT_028173	NT_006371	NT_025694	NT_031780
NT_016599	NT_031781	NT_016354	NT_033055	NT_033062	NT_033065	NT_006167	NT_006302
NT_022755	NT_022753	NT_022803	NT_022846	NT_022856	NT_022805	NT_022819	NT_022845
NT_006124	NT_022811	NT_006127	NT_006258	NT_016606	NT_029950	NT_028160	NT_029954
NT_022851	NT_022832	NT_015169	NT_006129	NT_022740	NT_029955	NT_022801	NT_022824
NT_006171	NT_022776	NT_022768	NT_006198	NT_006257	NT_022775	NT_006118	NT_022792
NT_006256	NT_006169	NT_022841	NT_033070	NT_022800	NT_033066	NT_033071	NT_028146
NT_029961	NT_025688

NT_028147

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_028147	AC023886	113977730	3
S/G/Y/R/B/O	NT_028147	AC004049	114163602	3	RH93129	4	519.77					1		AC004049, AC079846
S/G/Y/R/B/O	NT_028147	AC004049	114168895	3	RH59236	4	528.64			4	577.40	1		AC004049, AC079846
S/G/Y/R/B/O	NT_028147	AC004049	114168959	3	RH46001	4	528.23					1		AC004049, AC079846
S/G/Y/R/B/O	NT_028147	AC004049	114175275	3	RH93680	4	528.12					1		AC004049, AC079846
S/G/Y/R/B/O	NT_028147	AC004049	114273021	3	RH98332	4	529.82					1		AC004049
S/G/Y/R/B/O	NT_028147	AC004049	114299604	3	RH25007	5	583.96					2	AC008450, AC008453,	AC004049, AC008450, AC008453, AC010309
S/G/Y/R/B/O	NT_028147	AC109347	114343924	3	RH59479	4	527.50	4	6403.00	4	574.50	1		AC069028, AC109347
S/G/Y/R/B/O	NT_028147	AC109347	114343926	3	RH8897			4	6403.00	4	574.60	1		AC069028, AC109347
S/G/Y/R/B/O	NT_028147	AC109347	114343926	3	RH59566	4	528.12					1		AC069028, AC109347
S/G/Y/R/B/O	NT_028147	AC109347	114344032	3	RH25582	4	528.33					1		AC069028, AC109347
S/G/Y/R/B/O	NT_028147	AC109347	114345291	3	RH18385	4	519.67					1		AC069028, AC109347
S/G/Y/R/B/O	NT_028147	AC109347	114427765	3	RH33764			4	6403.00			1		AC069028, AC109347
S/G/Y/R/B/O	NT_028147	AC093663	114435492	3
S/G/Y/R/B/O	NT_028147	AC004704	114607237	3
S/G/Y/R/B/O	NT_028147	AC027480	114738553	1
S/G/Y/R/B/O	NT_028147	AC005509	114811777	3	RH29125			4	6272.00			1		AC005509
S/G/Y/R/B/O	NT_028147	AC005509	114827607	3	D4S2350					4	568.40	1		AC005509
S/G/Y/R/B/O	NT_028147	AC005509	114868548	3	CHLC.GATA62A12					4	566.70	1		AC005509
S/G/Y/R/B/O	NT_028147	AC004050	114911454	3	RH1847			4	6279.00			1		AC004050
S/G/Y/R/B/O	NT_028147	AC004050	114914467	3	RH93097	4	506.65					1		AC004050
S/G/Y/R/B/O	NT_028147	AC004050	114945853	3	RH58975	4	515.71			4	562.80	1		AC004050
S/G/Y/R/B/O	NT_028147	AC004050	114945853	3	RH10122	4	515.71	4	6279.00			1		AC004050
S/G/Y/R/B/O	NT_028147	AC004050	114949381	3	RH41369	4	506.65					1		AC004050
S/G/Y/R/B/O	NT_028147	AC004050	114949953	3	WI-16944					4	568.40	1		AC004050
S/G/Y/R/B/O	NT_028147	AC004050	114949953	3	RH38406			4	6277.00			1		AC004050
S/G/Y/R/B/O	NT_028147	AC004050	114949953	3	RH59123	4	506.65					1		AC004050
S/G/Y/R/B/O	NT_028147	AC004050	115012029	3	RH76406	4	508.95					1		AC004050
S/G/Y/R/B/O	NT_028147	AC093770	115044460	3	RH76153	4	506.65					1	AC108145,	AC093770, AC108145, AP002080
S/G/Y/R/B/O	NT_028147	AC093770	115046415	3	RH59347	4	515.71	4	6279.00	4	558.70	1	AC108145,	AC093770, AC108145, AP002080
S/G/Y/R/B/O	NT_028147	AC093770	115046444	3	RH10092	4	515.71					1	AC108145,	AC093770, AC108145, AP002080
S/G/Y/R/B/O	NT_028147	AC093770	115065024	3	RH47998	4	523.34					1	AC108145, AC108145,	AC093770, AC108145, AC108145, AP002080
S/G/Y/R/B/O	NT_028147	AC093770	115097565	3	RH59093	4	528.02			4	577.80	1	AC108145,	AC093770, AC108145, AP002080
S/G/Y/R/B/O	NT_028147	AC093770	115097611	3	RH16427	4	506.65					1	AC108145,	AC093770, AC108145, AP002080
S/G/Y/R/B/O	NT_028147	AC108145	115153037	1
S/G/Y/R/B/O	NT_028147	AC080036	115162051	1
S/G/Y/R/B/O	NT_028147	AC005187	115247286	3	RH42703	4	517.55	4	6279.00			1		AC005187
S/G/Y/R/B/O	NT_028147	AC098798	115387054	1	RH44836	10	380.97					5	AC002992, AC004617, AC023670, AC037447,	AC002992, AC004617, AC023670, AC037447, AC073131, AC108717
S/G/Y/R/B/O	NT_028147	AC017068	115462016	3	RH17615	4	520.70					1		AC017068
S/G/Y/R/B/O	NT_028147	AC084298	115619603	3
S/G/Y/R/B/O	NT_028147	AC024198	115697353	3	D4S406					4	571.70	1		AC024198
S/G/Y/R/B/O	NT_028147	AC024198	115697353	3	RH905			4	7854.00			1		AC024198
S/G/Y/R/B/O	NT_028147	AC004062	115838750	3
S/G/Y/R/B/O	NT_028147	AC096761	116111354	3	CHLC.GATA4C04.520					4	570.00	1	AC024334,	AC024334, AC096761
S/G/Y/R/B/O	NT_028147	AC097498	116260931	3	RH6067	4	523.84			4	572.00	1		AC034113, AC097498
S/G/Y/R/B/O	NT_028147	AC080088	116263905	3
S/G/Y/R/B/O	NT_028147	AC093584	116331364	3
S/G/Y/R/B/O	NT_028147	AC083795	116431261	3
S/G/Y/R/B/O	NT_028147	AC093760	116614632	3
S/G/Y/R/B/O	NT_028147	AC021615	116653970	1

NT_028147 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_028147	AC023244	116752538	1
S/G/Y/R/B/O	NT_028147	AC024334	116765437	1
S/G/Y/R/B/O	NT_028147		-		RH102859	4	523.34			1	AC004067,	AC004067
S/G/Y/R/B/O	NT_028147		-		RH11096	4	520.49			1	AC004057,	AC004057
S/G/Y/R/B/O	NT_028147		-		RH25104	4	524.04			1	AC036148, AC105314,	AC036148, AC105314
S/G/Y/R/B/O	NT_028147		-		RH41411	4	519.67			1	AC004168, AC107386,	AC004168, AC107386
S/G/Y/R/B/O	NT_028147		-		RH59096	4	523.94			0
S/G/Y/R/B/O	NT_028147		-		RH59199	4	526.17	4	567.60	1	AC004067,	AC004067
S/G/Y/R/B/O	NT_028147		-		WI-18054			4	568.40	1	AC004067, AP002020,	AC004067, AP002020
S/G/Y/R/B/O	NT_028147		-		RH59241	4	521.38	4	572.80	0	AC027472, AC036148, AC105314,	AC027472, AC036148, AC105314
S/G/Y/R/B/O	NT_028147		-		RH67757	4	519.60			1	AC004168, AC107386,	AC004168, AC107386
S/G/Y/R/B/O	NT_028147		-		RH80469	4	526.90			1	AC004067,	AC004067