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  Chromosome 4 - RH Maps - Single Contig
 

Chromosome 4 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_026996 NT_006111 NT_022865 NT_006081 NT_033075 NT_029956 NT_006051 NT_033060
NT_033064 NT_006362 NT_006307 NT_006342 NT_029958 NT_016407 NT_033056 NT_030649
NT_006344 NT_023072 NT_033076 NT_006350 NT_006285 NT_006316 NT_023052 NT_006189
NT_022794 NT_006305 NT_022751 NT_022995 NT_033067 NT_006098 NT_029274 NT_033069
NT_016297 NT_022782 NT_033059 NT_006238 NT_022831 NT_022853 NT_022850 NT_022778
NT_022852 NT_033063 NT_022813 NT_022836 NT_022862 NT_006303 NT_030640 NT_033073
NT_006281 NT_006216 NT_033072 NT_022760 NT_006109 NT_006328 NT_022844 NT_030642
NT_006114 NT_030659 NT_006204 NT_033074 NT_023068 NT_006201 NT_006383 NT_006397
NT_033061 NT_033068 NT_006365 NT_028147 NT_028173 NT_006371 NT_025694 NT_031780
NT_016599 NT_031781 NT_016354 NT_033055 NT_033062 NT_033065 NT_006167 NT_006302
NT_022755 NT_022753 NT_022803 NT_022846 NT_022856 NT_022805 NT_022819 NT_022845
NT_006124 NT_022811 NT_006127 NT_006258 NT_016606 NT_029950 NT_028160 NT_029954
NT_022851 NT_022832 NT_015169 NT_006129 NT_022740 NT_029955 NT_022801 NT_022824
NT_006171 NT_022776 NT_022768 NT_006198 NT_006257 NT_022775 NT_006118 NT_022792
NT_006256 NT_006169 NT_022841 NT_033070 NT_022800 NT_033066 NT_033071 NT_028146
NT_029961 NT_025688


  NT_006127
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006127AC0341181458885291          
S/G/Y/R/B/O NT_006127AC0995491459090303RH33791  47866.00  1 AC099549
S/G/Y/R/B/O NT_006127AC0995491459150463RH469824617.38    1 AC099549
S/G/Y/R/B/O NT_006127AC0976581460472373RH450724621.62    1AC034118, AC104685, AC034118, AC097658, AC104685
S/G/Y/R/B/O NT_006127AC1046851461195111RH267304618.60    2AC069544, AL158168, AC021271, AC069544, AC104685, AL158168
S/G/Y/R/B/O NT_006127AC1046851461255231RH128012557.48    2AC104064, AC116310, AC104064, AC104685, AC116310
S/G/Y/R/B/O NT_006127AC1046851461628441RH414274621.62    1 AC104685
S/G/Y/R/B/O NT_006127AC1046851461629841RH470054618.80    1 AC104685
S/G/Y/R/B/O NT_006127AC1046851461645111RH126514621.62    1 AC104685
S/G/Y/R/B/O NT_006127AC1046851461653941RH184174622.65    1 AC104685
S/G/Y/R/B/O NT_006127AC1046851461668901RH103994622.24    1 AC104685
S/G/Y/R/B/O NT_006127AC1046851461677601RH414054622.65    1 AC104685
S/G/Y/R/B/O NT_006127AC1046851462001331RH1032614622.24    1 AC104685
S/G/Y/R/B/O NT_006127AC0993961462202063          
S/G/Y/R/B/O NT_006127AC0259611464347341RH800774620.41    1 AC025961
S/G/Y/R/B/O NT_006127AC0259611464354251RH798454623.59    1 AC025961
S/G/Y/R/B/O NT_006127AC0259611464357481RH702424618.70    1 AC025961
S/G/Y/R/B/O NT_006127AC0259611465429931RH262134620.11    1AC018535, AC018535, AC025961
S/G/Y/R/B/O NT_006127AC1107621462658951RH13899  47923.00  1AC107223, AC107223, AC110762
S/G/Y/R/B/O NT_006127AC1107621462751591RH667224618.60    2 More than 15
S/G/Y/R/B/O NT_006127AC1107621462760771RH110504621.62    2 More than 15
S/G/Y/R/B/O NT_006127AC1107621462781171RH662064618.60    3AC093890, AC107223, AC109812, AC093890, AC107223, AC109812, AC110762
S/G/Y/R/B/O NT_006127AC1107621462808221RH991794621.62    1AC107223, AC107223, AC110762
S/G/Y/R/B/O NT_006127AC1107621462849581RH590944621.8247953.00  1AC093890, AC107223, AC109812, AC016359, AC093890, AC107223, AC109812, AC110762
S/G/Y/R/B/O NT_006127AC1107621462849581SGC33884    4674.101AC093890, AC107223, AC109812, AC016359, AC093890, AC107223, AC109812, AC110762
S/G/Y/R/B/O NT_006127AC1107621462850851RH711774618.80    3AC093890, AC093890, AC107223, AC109812, AC109812, AC016359, AC093890, AC093890, AC107223, AC109812, AC109812
S/G/Y/R/B/O NT_006127AC1107621462859031RH1031094622.55    3AC093890, AC093890, AC107223, AC109812, AC109812, AC016359, AC093890, AC093890, AC107223, AC109812, AC109812, AC110762
S/G/Y/R/B/O NT_006127AC1107621462943671RH696264622.52    1AC107223, AC016359, AC107223, AC110762
S/G/Y/R/B/O NT_006127AC1107621462972261RH110614622.52    3AC093890, AC093890, AC107223, AC109812, AC016359, AC093890, AC093890, AC107223, AC109812, AC110762
S/G/Y/R/B/O NT_006127AC1072231463124451          
S/G/Y/R/B/O NT_006127AC0185351464992141          
S/G/Y/R/B/O NT_006127AC1040901465826293          
S/G/Y/R/B/O NT_006127AC1098121466863621RH469724620.11    2 AC016359, AC016359, AC109812, AC109812
S/G/Y/R/B/O NT_006127AC1098121466975011WI-5722    4672.702AC093890, AC016359, AC016359, AC093890, AC109812, AC109812
S/G/Y/R/B/O NT_006127AC1098121467185031RH453474618.70    2AC093890, AC016359, AC093890, AC109812
S/G/Y/R/B/O NT_006127AC1098121467229251RH589984618.8047935.00  1 AC016359, AC109812
S/G/Y/R/B/O NT_006127AC1098121467229251D4S3137    4672.701 AC016359, AC109812
S/G/Y/R/B/O NT_006127AC1098121467245521RH8028  47935.00  1 AC016359, AC109812
S/G/Y/R/B/O NT_006127AC1098121467270291RH110504621.62    2 More than 15
S/G/Y/R/B/O NT_006127AC1098121467278581RH110784621.72    2AC093890, AC016359, AC093890, AC109812, AF090739, AJ309709, AJ309710, AJ309711, AJ309712, M60708, M60709, M60710, M81079
S/G/Y/R/B/O NT_006127AC1098121467290641RH662064618.60    3AC093890, AC107223, AC110762, AC093890, AC107223, AC109812, AC110762
S/G/Y/R/B/O NT_006127AC1098121467356401RH711774618.80    3AC093890, AC093890, AC107223, AC016359, AC093890, AC093890, AC107223, AC109812, AC109812
S/G/Y/R/B/O NT_006127AC1098121467364451RH1031094622.55    3AC093890, AC093890, AC107223, AC110762, AC016359, AC093890, AC093890, AC107223, AC109812, AC109812, AC110762
S/G/Y/R/B/O NT_006127AC1098121467531071RH110614622.52    3AC093890, AC093890, AC107223, AC110762, AC016359, AC093890, AC093890, AC107223, AC109812, AC110762
S/G/Y/R/B/O NT_006127AC1098121468074111RH469724620.11    2 AC016359, AC016359, AC109812, AC109812
S/G/Y/R/B/O NT_006127AC1098121468184761WI-5722    4672.702AC093890, AC016359, AC016359, AC093890, AC109812, AC109812
S/G/Y/R/B/O NT_006127AC0938901468392833RH453474618.70    2AC109812, AC016359, AC093890, AC109812
S/G/Y/R/B/O NT_006127AC0938901468468653RH667224618.60    2 More than 15
S/G/Y/R/B/O NT_006127AC0938901468486183RH110784621.72    2AC109812, AC016359, AC093890, AC109812, AF090739, AJ309709, AJ309710, AJ309711, AJ309712, M60708, M60709, M60710, M81079
S/G/Y/R/B/O NT_006127AC0938901468498303RH662064618.60    3AC107223, AC109812, AC110762, AC093890, AC107223, AC109812, AC110762


  NT_006127 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006127AC0938901468517193RH684374622.52    1 AC093890
S/G/Y/R/B/O NT_006127AC0938901468539173RH711774618.80    3AC107223, AC109812, AC109812, AC016359, AC093890, AC093890, AC107223, AC109812, AC109812
S/G/Y/R/B/O NT_006127AC0938901468547223RH1031094622.55    3AC107223, AC109812, AC109812, AC110762, AC016359, AC093890, AC093890, AC107223, AC109812, AC109812, AC110762
S/G/Y/R/B/O NT_006127AC0938901468668983RH110614622.52    3AC107223, AC109812, AC110762, AC016359, AC093890, AC093890, AC107223, AC109812, AC110762
S/G/Y/R/B/O NT_006127AC1110011470704931RH744604620.11    1AC112232, AC027460, AC111001, AC112232
S/G/Y/R/B/O NT_006127AC1110011470704931RH41721  47923.00  1AC112232, AC027460, AC111001, AC112232
S/G/Y/R/B/O NT_006127AC1122321470723271          
S/G/Y/R/B/O NT_006127AC1068711471346133          
S/G/Y/R/B/O NT_006127AC0985881473134013RH661324621.82    1AC051645, AC024423, AC051645, AC098588
S/G/Y/R/B/O NT_006127AC0985881473297723RH483734618.80    1AC025019, AC051645, AC024423, AC025019, AC051645, AC098588
S/G/Y/R/B/O NT_006127AC0985881473587233RH594474620.11    1AC025019, AC025019, AC098588
S/G/Y/R/B/O NT_006127AC0985881473587233WI-15195    4672.701AC025019, AC025019, AC098588
S/G/Y/R/B/O NT_006127AC0985881473773083RH704474620.11    1AC025019, AC025019, AC098588
S/G/Y/R/B/O NT_006127AC0516451475067811          
S/G/Y/R/B/O NT_006127AC0250191475083921          
S/G/Y/R/B/O NT_006127 - RH1020004616.66    1AC096733, AC096733
S/G/Y/R/B/O NT_006127 - RH14728  47818.00  1AC023350, AC024364, AC108060, AC023350, AC024364, AC108060
S/G/Y/R/B/O NT_006127 - RH1025174616.97    1AC097476, AC108077, AC025879, AC097476, AC108077
S/G/Y/R/B/O NT_006127 - RH76813  47661.00  1AC048378, AC048378
S/G/Y/R/B/O NT_006127 - RH1036674622.03    0  
S/G/Y/R/B/O NT_006127 - RH309  47728.00  1AC097475, AC097475
S/G/Y/R/B/O NT_006127 - RH152694616.14    1AC097504, AC097504
S/G/Y/R/B/O NT_006127 - RH318  47743.00  1AC097504, AC097504
S/G/Y/R/B/O NT_006127 - RH183554622.24    0  
S/G/Y/R/B/O NT_006127 - RH336  47698.00  1AC025490, AC108019, AC025490, AC108019
S/G/Y/R/B/O NT_006127 - RH412884621.62    0  
S/G/Y/R/B/O NT_006127 - RH905  47854.00  1AC024198, AC024198
S/G/Y/R/B/O NT_006127 - RH413134615.93    1AC096733, AC096733
S/G/Y/R/B/O NT_006127 - RH413344615.87    1AC107220, AC011940, AC107220
S/G/Y/R/B/O NT_006127 - RH413384615.93    1AC096733, AC096733
S/G/Y/R/B/O NT_006127 - RH413634617.07    1AC108077, AC025879, AC108077
S/G/Y/R/B/O NT_006127 - RH413674621.93    1AC104596, AC104596, AC116175
S/G/Y/R/B/O NT_006127 - RH666854617.07    1AC024364, AC108060, AC024364, AC108060