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  Chromosome 4 - RH Maps - Single Contig
 

Chromosome 4 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_026996 NT_006111 NT_022865 NT_006081 NT_033075 NT_029956 NT_006051 NT_033060
NT_033064 NT_006362 NT_006307 NT_006342 NT_029958 NT_016407 NT_033056 NT_030649
NT_006344 NT_023072 NT_033076 NT_006350 NT_006285 NT_006316 NT_023052 NT_006189
NT_022794 NT_006305 NT_022751 NT_022995 NT_033067 NT_006098 NT_029274 NT_033069
NT_016297 NT_022782 NT_033059 NT_006238 NT_022831 NT_022853 NT_022850 NT_022778
NT_022852 NT_033063 NT_022813 NT_022836 NT_022862 NT_006303 NT_030640 NT_033073
NT_006281 NT_006216 NT_033072 NT_022760 NT_006109 NT_006328 NT_022844 NT_030642
NT_006114 NT_030659 NT_006204 NT_033074 NT_023068 NT_006201 NT_006383 NT_006397
NT_033061 NT_033068 NT_006365 NT_028147 NT_028173 NT_006371 NT_025694 NT_031780
NT_016599 NT_031781 NT_016354 NT_033055 NT_033062 NT_033065 NT_006167 NT_006302
NT_022755 NT_022753 NT_022803 NT_022846 NT_022856 NT_022805 NT_022819 NT_022845
NT_006124 NT_022811 NT_006127 NT_006258 NT_016606 NT_029950 NT_028160 NT_029954
NT_022851 NT_022832 NT_015169 NT_006129 NT_022740 NT_029955 NT_022801 NT_022824
NT_006171 NT_022776 NT_022768 NT_006198 NT_006257 NT_022775 NT_006118 NT_022792
NT_006256 NT_006169 NT_022841 NT_033070 NT_022800 NT_033066 NT_033071 NT_028146
NT_029961 NT_025688


  NT_006316
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006316AC021248263666941RH124004105.37    1AC058821, AC021248, AC058821, AC105145, AC110812
S/G/Y/R/B/O NT_006316AC021248263667331RH589354103.51  4132.501AC058821, AC021248, AC058821, AC105145, AC110812
S/G/Y/R/B/O NT_006316AC021248263667641RH8351  41529.00  1AC058821, AC021248, AC058821, AC105145, AC110812
S/G/Y/R/B/O NT_006316AC058821204738161          
S/G/Y/R/B/O NT_006316AC020706268152521RH594314105.66  4128.001 AC020706
S/G/Y/R/B/O NT_006316AC105290204852171          
S/G/Y/R/B/O NT_006316AC018967205792651RH104197480.07    2AC006840, AC006840, AC018967
S/G/Y/R/B/O NT_006316AC114736206377731          
S/G/Y/R/B/O NT_006316AC097457206629993          
S/G/Y/R/B/O NT_006316AC024595207838351          
S/G/Y/R/B/O NT_006316AC109362209482383          
S/G/Y/R/B/O NT_006316AC103562209762903D4S1267    492.201AC093658, AC093658, AC103562
S/G/Y/R/B/O NT_006316AC103562210690673D4S930    492.201AC093658, AC093658, AC103562
S/G/Y/R/B/O NT_006316AC024230211189683          
S/G/Y/R/B/O NT_006316AC110767212772373          
S/G/Y/R/B/O NT_006316AC114728213682151RH17395480.07    1 AC114728
S/G/Y/R/B/O NT_006316AC093658213759981          
S/G/Y/R/B/O NT_006316AC093898215001453WI-10819    489.601 AC007118, AC093898
S/G/Y/R/B/O NT_006316AC093898215477853CHLC.GATA90B10    490.501AC112245, AC093898, AC112245
S/G/Y/R/B/O NT_006316AC093898215513853D4S419    489.601AC112245, AC093898, AC112245
S/G/Y/R/B/O NT_006316AC093898215513853RH330  41150.00  1AC112245, AC093898, AC112245
S/G/Y/R/B/O NT_006316AC110074215993613WI-3049    489.601AC112245, AC110074, AC112245
S/G/Y/R/B/O NT_006316AC112245216124011          
S/G/Y/R/B/O NT_006316AC006840217410973RH104197480.07    2AC018967, AC006840, AC018967
S/G/Y/R/B/O NT_006316AC006840217900683RH15662480.07    1AC114736, AC006840, AC114736
S/G/Y/R/B/O NT_006316AC006840217900683RH29123  41157.00  1AC114736, AC006840, AC114736
S/G/Y/R/B/O NT_006316AC079755218327323          
S/G/Y/R/B/O NT_006316AC098862220172033          
S/G/Y/R/B/O NT_006316AC096718221381723          
S/G/Y/R/B/O NT_006316AC108011223029071RH47792485.73    1 AC108011, AL136447
S/G/Y/R/B/O NT_006316AC108011223171031WI-4000    497.901 AC108011
S/G/Y/R/B/O NT_006316AC108011223766741RH102649485.73    1 AC108011
S/G/Y/R/B/O NT_006316AC092577224240823RH59235485.73  497.901AC108011, AC046194, AC092577, AC108011
S/G/Y/R/B/O NT_006316AC092577224240823RH38410  41209.00  1AC108011, AC046194, AC092577, AC108011
S/G/Y/R/B/O NT_006316AC021118226020703RH41403487.77    1 AC021118
S/G/Y/R/B/O NT_006316AC021118226032313RH68057488.65    1 AC021118
S/G/Y/R/B/O NT_006316AC021118226036863RH45762485.73    1 AC021118
S/G/Y/R/B/O NT_006316AC104065226960973RH8355  41228.00  1 AC104065
S/G/Y/R/B/O NT_006316AC104065227114383RH93232487.63    1 AC104065
S/G/Y/R/B/O NT_006316AC104065227172593RH80089485.53    1 AC104065
S/G/Y/R/B/O NT_006316AC097505227359603RH92764488.65    1 AC007762, AC097505
S/G/Y/R/B/O NT_006316AC097505227479543RH343  41243.00  1 AC007762
S/G/Y/R/B/O NT_006316AC097505228965233D4S456    4104.101 AC097505
S/G/Y/R/B/O NT_006316AC109636229630843RH17396487.93    1 AC109636
S/G/Y/R/B/O NT_006316AC109636229705323RH59449487.03  497.901 AC116641
S/G/Y/R/B/O NT_006316AC109636229705323RH38421  41264.00  1 AC116641
S/G/Y/R/B/O NT_006316AC108161230254321RH28551487.56    2AC096719, AC110616, AC096719, AC108161, AC110616
S/G/Y/R/B/O NT_006316AC093735232115263RH48551484.30    1 AC093735, AC110298
S/G/Y/R/B/O NT_006316AC093735232673113RH59232487.46  499.601 AC093735, AC110298
S/G/Y/R/B/O NT_006316AC093735232714503RH59512488.49  4103.401 AC093735, AC110298, M88565


  NT_006316 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006316AC093735232716783RH9795488.95    1 AC093735, AC110298, M88565
S/G/Y/R/B/O NT_006316AC093735232721143RH14213  41371.00  1 AC093735, AC110298, M88565
S/G/Y/R/B/O NT_006316AC093814233611513RH92906488.39    1 AC093814
S/G/Y/R/B/O NT_006316AC098583234388643          
S/G/Y/R/B/O NT_006316AC093917235737053RH59307489.11  4101.501AC093626, AC022258, AC093626, AC093917
S/G/Y/R/B/O NT_006316AC093917235758723RH93679489.01    1AC093626, AC022258, AC093626, AC093917
S/G/Y/R/B/O NT_006316AC093917237031973RH59455489.1141389.004101.701AC016782, AC068250, AC016782, AC068250, AC093917
S/G/Y/R/B/O NT_006316AC093917237517893D4S336    4108.301AC016782, AC016782, AC093917
S/G/Y/R/B/O NT_006316AC016782237795091RH30862  41389.00  1 AC016782
S/G/Y/R/B/O NT_006316AC093626238227771          
S/G/Y/R/B/O NT_006316AC097512239141503D4S968    499.601 AC097512
S/G/Y/R/B/O NT_006316AC097512239694023RH65453488.34    1 AC097512
S/G/Y/R/B/O NT_006316AC114912240403531          
S/G/Y/R/B/O NT_006316AC092440241945143D4S972    4104.101AC114912, AC006295, AC092440, AC114912
S/G/Y/R/B/O NT_006316AC098676242966063          
S/G/Y/R/B/O NT_006316AC006052243165323          
S/G/Y/R/B/O NT_006316AC093607245812053WI-5645    4100.101 AC044905, AC093607
S/G/Y/R/B/O NT_006316AC093607246030463RH331  41438.00  1 AC093607
S/G/Y/R/B/O NT_006316AC097508246226183          
S/G/Y/R/B/O NT_006316AC092834247307793RH103156485.73    1 AC020746, AC092834
S/G/Y/R/B/O NT_006316AC092834247308763RH75695488.95    1 AC020746, AC092834
S/G/Y/R/B/O NT_006316AC092834247405763RH93032488.34    1 AC020746, AC092834, AF108205
S/G/Y/R/B/O NT_006316AC108071248728493          
S/G/Y/R/B/O NT_006316AC006229250402343AFMA071ZE9    4100.101 AC006229
S/G/Y/R/B/O NT_006316AC108076251819843RH15661491.2641461.00  1 AC108076
S/G/Y/R/B/O NT_006316AC092846253604873D4S860    4101.601AC108028, AC005769, AC027482, AC092846, AC108028
S/G/Y/R/B/O NT_006316AC108028255205061WI-3401    4101.601AC115110, AC108028, AC115110
S/G/Y/R/B/O NT_006316AC115110254274961RH102347489.15    1AC108028, AC108028, AC115110
S/G/Y/R/B/O NT_006316AC114777256429471RH45901495.83    1AC006390, AC006390, AC114777
S/G/Y/R/B/O NT_006316AC006390256972173RH74450497.87    1AC114777, AC006390, AC114777
S/G/Y/R/B/O NT_006316AC006390256972173RH312  41498.00  1AC114777, AC006390, AC114777
S/G/Y/R/B/O NT_006316AC006390257514963RH102359495.86    1AC073829, AC006390, AC073829, U10116
S/G/Y/R/B/O NT_006316AC006390257539403RH80574493.69    1AC073829, AC006390, AC073829
S/G/Y/R/B/O NT_006316AC006390257539883RH102387495.86    1AC073829, AC006390, AC073829
S/G/Y/R/B/O NT_006316AC006390257544683RH103641495.86    1AC073829, AC006390, AC073829
S/G/Y/R/B/O NT_006316AC006390257560533RH78080495.86    1  
S/G/Y/R/B/O NT_006316AC073829258196341          
S/G/Y/R/B/O NT_006316AC113614258795801          
S/G/Y/R/B/O NT_006316AC007073259507513RH18349499.69    1AC113614, AC007073, AC113614
S/G/Y/R/B/O NT_006316AC007073259558153RH15553497.57    1AC113614, AC007073, AC113614
S/G/Y/R/B/O NT_006316AC007073260522723RH591214100.40  4131.501AC104662, AC007073, AC104662
S/G/Y/R/B/O NT_006316AC007073260522723RH684774101.12    1AC104662, AC007073, AC104662
S/G/Y/R/B/O NT_006316AC007073260686063RH46210495.96    1AC104662, AC007073, AC104662
S/G/Y/R/B/O NT_006316AC104662261725931RH1029904101.55    3 AC044900, AC104662
S/G/Y/R/B/O NT_006316AC108218262272113RH1021284101.55    2 AC044900
S/G/Y/R/B/O NT_006316AC108218263181183RH414084102.78    2AC021248, AC058821, AC021248, AC044900, AC058821, AC105145, AC108218, AC110812
S/G/Y/R/B/O NT_006316AC092436266757623RH158324104.09    1 AC006393, AC092436
S/G/Y/R/B/O NT_006316AC092436266758263RH167754105.99    1 AC006393, AC092436
S/G/Y/R/B/O NT_006316AC092436266766943RH481034104.27    1 AC006393
S/G/Y/R/B/O NT_006316AC093660267274811          


  NT_006316 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006316AC006839267285351          
S/G/Y/R/B/O NT_006316AC097714269618893D4S1021    4123.901AC006839, AC093660, AC006839, AC093660, AC097714
S/G/Y/R/B/O NT_006316AC111003272712241D4S863    4128.301AC110779, AC110779, AC111003
S/G/Y/R/B/O NT_006316AC110779270840651          
S/G/Y/R/B/O NT_006316AC097109271040881AFMB355YA5    4130.601AC111003, AC097109, AC111003
S/G/Y/R/B/O NT_006316AC084735271943091          
S/G/Y/R/B/O NT_006316AC093637273294153D4S858    4134.301AC084735, AC006391, AC084735, AC093637
S/G/Y/R/B/O NT_006316AC093637273294173RH593914105.66  4134.201 AC006391, AC093637
S/G/Y/R/B/O NT_006316AC093637273299303RH593414107.48  4129.001AC084735, AC006391, AC084735, AC093637
S/G/Y/R/B/O NT_006316AC093637273306153RH414154108.43    1 AC006391, AC093637
S/G/Y/R/B/O NT_006316AC093637273308633RH593774106.93  4134.401 AC006391, AC093637
S/G/Y/R/B/O NT_006316AC093637273311073RH483994105.66    1 AC006391, AC093637, L08904
S/G/Y/R/B/O NT_006316AC093637273342903RH483954105.66    1AC084735, AC006391, AC084735, AC093637, AL357494, L08904
S/G/Y/R/B/O NT_006316AC093637273815423RH14077  41585.00  1AC084735, AC006391, AC084735, AC092446, AC093637, D85606
S/G/Y/R/B/O NT_006316AC093637273817593RH413194107.98    1AC084735, AC006391, AC084735, AC092446, AC093637
S/G/Y/R/B/O NT_006316AC093807274235533RH38309  41595.00  1 AC006391
S/G/Y/R/B/O NT_006316AC093807275345813RH173934108.43    1 AC007426, AC093807
S/G/Y/R/B/O NT_006316AC107390276550363RH593354107.53  4135.801 AC107390
S/G/Y/R/B/O NT_006316AC107390276594603RH932244107.42    1 AC107390
S/G/Y/R/B/O NT_006316AC106047276833023          
S/G/Y/R/B/O NT_006316AC006928279022203WI-4086    4139.101 AC006928
S/G/Y/R/B/O NT_006316AC006928279233073RH591524110.63  4139.101 AC006928
S/G/Y/R/B/O NT_006316AC006928279233583RH184124113.17    1 AC006928
S/G/Y/R/B/O NT_006316AC006928279233943RH414224111.69    1 AC006928
S/G/Y/R/B/O NT_006316AC006928279251683RH33722  41607.00  1 AC006928
S/G/Y/R/B/O NT_006316AC111195280246921          
S/G/Y/R/B/O NT_006316AC024132280922793D4S1022    4139.101AC111195, AC024132, AC079968, AC111195
S/G/Y/R/B/O NT_006316AC024132281565193CHLC.ATA27C07    4139.201 AC024132
S/G/Y/R/B/O NT_006316AC006568282180343RH257537484.53    2AC003086, AC003086, AC006568, AC092792
S/G/Y/R/B/O NT_006316AC093845283744863          
S/G/Y/R/B/O NT_006316AC097380285109513RH156594118.0841628.00  1 AC020628, AC097380
S/G/Y/R/B/O NT_006316AC093854285398633          
S/G/Y/R/B/O NT_006316AC093753287055263          
S/G/Y/R/B/O NT_006316AC007106289309293WI-6120    4142.101 AC007106
S/G/Y/R/B/O NT_006316AC098863289800983          
S/G/Y/R/B/O NT_006316AC108012290673591          
S/G/Y/R/B/O NT_006316AC093791292436483WI-10874    4143.801 AC093791
S/G/Y/R/B/O NT_006316AC109588292787413          
S/G/Y/R/B/O NT_006316AC097480293361823          
S/G/Y/R/B/O NT_006316AC091602295031763          
S/G/Y/R/B/O NT_006316AC096566296388413          
S/G/Y/R/B/O NT_006316AC111004297386723RH594284112.31  4143.801 AC111004
S/G/Y/R/B/O NT_006316AC111004297386723RH33439  41770.00  1 AC111004
S/G/Y/R/B/O NT_006316 - RH102495495.86    0AC114777, AC114777
S/G/Y/R/B/O NT_006316 - D4S1593    499.001AC009568, AC110296, AC009568, AC110296
S/G/Y/R/B/O NT_006316 - RH1044044108.98    1AC098595, AC016893, AC098595
S/G/Y/R/B/O NT_006316 - WI-18093    4100.101AC096576, AC096576
S/G/Y/R/B/O NT_006316 - RH11937495.96    0  
S/G/Y/R/B/O NT_006316 - WI-20656    4101.401AC096576, AC021536, AC096576
S/G/Y/R/B/O NT_006316 - RH12353493.28    1AC113606, AC113606


  NT_006316 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006316 - WI-6508    4103.401AC110612, AC021536, AC110612
S/G/Y/R/B/O NT_006316 - RH26822484.43    0  
S/G/Y/R/B/O NT_006316 - WI-21155    4103.601AC110612, AC021536, AC110612
S/G/Y/R/B/O NT_006316 - RH27172485.73    0AC104065, AC007762, AC104065
S/G/Y/R/B/O NT_006316 - SGC30526    4104.001AC021339, AC096576, AC021339, AC096576
S/G/Y/R/B/O NT_006316 - RH412704105.66    0  
S/G/Y/R/B/O NT_006316 - CHLC.GATA121A02    4143.800  
S/G/Y/R/B/O NT_006316 - RH41291489.76    1AC021339, AC096576, AC021339, AC096576
S/G/Y/R/B/O NT_006316 - RH413214105.66    0  
S/G/Y/R/B/O NT_006316 - RH484954110.63    1AC098595, AC016893, AC098595
S/G/Y/R/B/O NT_006316 - RH596074108.98    1AC026262, AC107394, AC026262, AC107394
S/G/Y/R/B/O NT_006316 - RH808984108.87    0AC097716, AC110766, AC097716, AC110766
S/G/Y/R/B/O NT_006316 - RH926054110.63    1AC026262, AC107394, AC026262, AC107394
S/G/Y/R/B/O NT_006316 - RH9952492.87    1 AC021536