Chromosome 4 - RH Maps - Single Contig

Chromosome 4 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_026996	NT_006111	NT_022865	NT_006081	NT_033075	NT_029956	NT_006051	NT_033060
NT_033064	NT_006362	NT_006307	NT_006342	NT_029958	NT_016407	NT_033056	NT_030649
NT_006344	NT_023072	NT_033076	NT_006350	NT_006285	NT_006316	NT_023052	NT_006189
NT_022794	NT_006305	NT_022751	NT_022995	NT_033067	NT_006098	NT_029274	NT_033069
NT_016297	NT_022782	NT_033059	NT_006238	NT_022831	NT_022853	NT_022850	NT_022778
NT_022852	NT_033063	NT_022813	NT_022836	NT_022862	NT_006303	NT_030640	NT_033073
NT_006281	NT_006216	NT_033072	NT_022760	NT_006109	NT_006328	NT_022844	NT_030642
NT_006114	NT_030659	NT_006204	NT_033074	NT_023068	NT_006201	NT_006383	NT_006397
NT_033061	NT_033068	NT_006365	NT_028147	NT_028173	NT_006371	NT_025694	NT_031780
NT_016599	NT_031781	NT_016354	NT_033055	NT_033062	NT_033065	NT_006167	NT_006302
NT_022755	NT_022753	NT_022803	NT_022846	NT_022856	NT_022805	NT_022819	NT_022845
NT_006124	NT_022811	NT_006127	NT_006258	NT_016606	NT_029950	NT_028160	NT_029954
NT_022851	NT_022832	NT_015169	NT_006129	NT_022740	NT_029955	NT_022801	NT_022824
NT_006171	NT_022776	NT_022768	NT_006198	NT_006257	NT_022775	NT_006118	NT_022792
NT_006256	NT_006169	NT_022841	NT_033070	NT_022800	NT_033066	NT_033071	NT_028146
NT_029961	NT_025688

NT_006216

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_006216	AC093851	73227393	1	RH59395	4	422.68			4	471.20	1		AC023765, AC093851
S/G/Y/R/B/O	NT_006216	AC093851	73269922	1	RH69152	4	422.46					1		AC023765, AC093851
S/G/Y/R/B/O	NT_006216	AC093851	73422024	1	AFM088YF7					4	464.00	1	AC096713,	AC096713
S/G/Y/R/B/O	NT_006216	AC019005	73429751	1	RH28973			4	3983.00			1	AC096713,	AC096713
S/G/Y/R/B/O	NT_006216	AC022863	73213716	1
S/G/Y/R/B/O	NT_006216	AC096713	73536870	3	RH76812			4	3993.00			1		AC096713
S/G/Y/R/B/O	NT_006216	AC110783	73560453	3
S/G/Y/R/B/O	NT_006216	AC079230	73581934	3
S/G/Y/R/B/O	NT_006216	AC110006	73743479	2
S/G/Y/R/B/O	NT_006216	AC019089	73756972	3
S/G/Y/R/B/O	NT_006216	AC024722	73991588	3	RH68432	4	422.24					1		AC024722, AC073514, AP002823, L10641
S/G/Y/R/B/O	NT_006216	AC024722	73992447	3	RH32969			4	3996.00	4	477.30	1		AC024722, AC073514, AP002823, L10641, S67526
S/G/Y/R/B/O	NT_006216	AC024722	73992447	3	RH59219	4	422.68					1		AC024722, AC073514, AP002823, L10641, S67526
S/G/Y/R/B/O	NT_006216	AC024722	74002472	3	RH59423	4	423.01	4	3993.00	4	475.60	1		AC024722, AC073514, AP002823, L10641
S/G/Y/R/B/O	NT_006216	AC024722	74017455	3	RH74666			4	3993.00			1		AC024722, AC073514, AP002823, L10641
S/G/Y/R/B/O	NT_006216	AC024722	74023365	3	RH11072	4	419.29					1		AC024722, AC073514, AP002823, L10641
S/G/Y/R/B/O	NT_006216	AC068721	74050062	3
S/G/Y/R/B/O	NT_006216	AC106898	74225344	1
S/G/Y/R/B/O	NT_006216	AC106051	74393007	1
S/G/Y/R/B/O	NT_006216	AC095056	74520068	3	RH59189	4	425.31	4	4002.00	4	478.30	1	AC106051,	AC095056, AC106051
S/G/Y/R/B/O	NT_006216	AC095056	74520349	3	RH77874	4	444.58					1	AC106051,	AC095056, AC106051
S/G/Y/R/B/O	NT_006216	AC095056	74522109	3	RH27215	4	423.97					1	AC106051,	AC095056, AC106051
S/G/Y/R/B/O	NT_006216	AC093790	74652885	3
S/G/Y/R/B/O	NT_006216	AC104814	74803244	3
S/G/Y/R/B/O	NT_006216	AC110082	74908998	3
S/G/Y/R/B/O	NT_006216	AC096728	74979380	3
S/G/Y/R/B/O	NT_006216	AC093839	75060076	3
S/G/Y/R/B/O	NT_006216	AC095053	75293664	3	RH41390	4	423.69					1		AC095053
S/G/Y/R/B/O	NT_006216	AC105757	75331013	3	RH59269	4	424.42			4	478.90	1		AC105757
S/G/Y/R/B/O	NT_006216	AC105757	75331018	3	RH35831	4	450.27					1
S/G/Y/R/B/O	NT_006216	AC053527	75350483	3	RH65990	4	450.27					1
S/G/Y/R/B/O	NT_006216	AC053527	75431896	3	SGC38257					4	479.50	1		AC053527
S/G/Y/R/B/O	NT_006216	AC053527	75431896	3	RH59579	4	450.06					1		AC053527
S/G/Y/R/B/O	NT_006216	AC053527	75470374	3	WI-3669					4	482.40	1		AC053527, AP002857
S/G/Y/R/B/O	NT_006216	AC053527	75488253	3	RH59186	4	426.83	4	4040.00	4	480.10	1		AC053527, AP002857
S/G/Y/R/B/O	NT_006216	AC053527	75488254	3	WI-11060					4	482.10	1		AC053527, AP002857
S/G/Y/R/B/O	NT_006216	AC053527	75488254	3	RH59578	4	450.01					1		AC053527, AP002857
S/G/Y/R/B/O	NT_006216	AC053527	75490517	3	RH59567	4	427.79			4	480.90	1		AC053527, AP002857
S/G/Y/R/B/O	NT_006216	AC053527	75501525	3	RH103984	4	450.06					1		AC053527, AP002857
S/G/Y/R/B/O	NT_006216	AC053527	75502357	3	RH38459			4	4056.00			1		AC053527, AP002857
S/G/Y/R/B/O	NT_006216	AC108157	75656400	3	RH11066	4	426.08					1		AC008076, AC108157, AP002825, AP002911, M12523
S/G/Y/R/B/O	NT_006216	AC108157	75660054	3	RH59218	4	426.94	4	4086.00	4	482.90	1		AC008076, AC108157, AP002825, AP002911, M12523
S/G/Y/R/B/O	NT_006216	AC108157	75660214	3	RH25594	4	423.24					1		AC008076, AC108157, AP002825, AP002911, M12523
S/G/Y/R/B/O	NT_006216	AC108157	75694254	3	RH76186	4	424.02					1		AC008076, AC108157, AP002825, M16110
S/G/Y/R/B/O	NT_006216	AC108157	75694594	3	RH1842			4	4106.00			1		AC008076, AC108157, AP002825, M16110
S/G/Y/R/B/O	NT_006216	AC108157	75728961	3	RH16430	4	424.58					1		AC008076, AC108157, AP002825, U51243
S/G/Y/R/B/O	NT_006216	AC108157	75739012	3	RH41322	4	425.86					1	AC110752,	AC008076, AC108157, AC110752, AP002825, U51243
S/G/Y/R/B/O	NT_006216	AC110752	75742684	3	RH94242	4	425.53					1		AC008076, AC110752, AP002825, U51243
S/G/Y/R/B/O	NT_006216	AC074250	75772936	3	RH41407	4	425.46					1		AC074250, AP002825
S/G/Y/R/B/O	NT_006216	AC074250	75910891	3	WI-9780					4	483.30	2	AL136327,	AC074250, AL136327

NT_006216 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_006216	AC112518	75944817	3	WI-5565					4	482.20	2	AL136327,	AC112518, AL136327
S/G/Y/R/B/O	NT_006216	AC112518	75981528	3	RH11083	14	252.33					2	AL136327,	AC112518, AF385628, AL133124, AL136327, M28130
S/G/Y/R/B/O	NT_006216	AC112518	75982380	3	RH12888	4	423.46					2	AL136327,	AC112518, AF385628, AL133124, AL136327, M28130
S/G/Y/R/B/O	NT_006216	AC108029	76076624	3	RH70711	4	426.64					1		AC108029, AL133124
S/G/Y/R/B/O	NT_006216	AC092438	76093089	3	RH8997			4	4086.00			1		AC092438, AL133124
S/G/Y/R/B/O	NT_006216	AC092438	76109752	3	RH76601	4	450.27					1		AC010784, AC092438, AL133124
S/G/Y/R/B/O	NT_006216	AC092438	76109877	3	RH17698	4	425.86					2	AC093677,	AC010784, AC013573, AC092438, AC093677, AL133124, AP001194
S/G/Y/R/B/O	NT_006216	AC097709	76219813	3	RH70505	4	425.14					1		AC010784, AC046188, AC097709, AF349466
S/G/Y/R/B/O	NT_006216	AC097709	76226932	3	RH28777			4	4132.00			1		AC010784, AC046188, AC097709, AF349466
S/G/Y/R/B/O	NT_006216	AC097709	76234764	3	RH48261	4	425.75					1		AC010784, AC046188, AC097709, AF349466
S/G/Y/R/B/O	NT_006216	AC097709	76235767	3	RH47001	4	424.42					1		AC010784, AC046188, AC097709, AF349466, U12709
S/G/Y/R/B/O	NT_006216	AC097709	76237132	3	RH11139	4	427.71					1		AC010784, AC046188, AC097709, AF349466, L37036, U12709
S/G/Y/R/B/O	NT_006216	AC097709	76275563	3	RH33584			4	4145.00	4	482.10	1		AC010784, AC046188, AC097709
S/G/Y/R/B/O	NT_006216	AC097709	76275563	3	RH59562	4	450.06					1		AC010784, AC046188, AC097709
S/G/Y/R/B/O	NT_006216	AC097709	76275888	3	RH41326	4	450.01					1		AC010784, AC046188, AC097709
S/G/Y/R/B/O	NT_006216	AC097709	76276103	3	RH76214	4	450.06					1		AC010784, AC046188, AC097709
S/G/Y/R/B/O	NT_006216	AC097709	76293061	3	RH78903	4	427.79					1		AC010784, AC013573, AC097709
S/G/Y/R/B/O	NT_006216	AC097709	76293079	3	RH41317	4	425.42					1		AC010784, AC013573, AC046188, AC097709, AP001194
S/G/Y/R/B/O	NT_006216	AC093677	76336007	3	RH59106	4	424.58			4	479.80	1		AC013573, AC093677, AP001194
S/G/Y/R/B/O	NT_006216	AC093677	76336072	3	RH66505	4	424.53					1		AC013573, AC093677, AP001194
S/G/Y/R/B/O	NT_006216	AC093677	76336187	3	RH17698	4	425.86					2	AC092438,	AC010784, AC013573, AC092438, AC093677, AL133124, AP001194
S/G/Y/R/B/O	NT_006216	AC093677	76337567	3	RH69945	4	425.68					1		AC013573, AC093677
S/G/Y/R/B/O	NT_006216	AC093677	76408566	3	RH104258	4	450.06					1		AC013573, AC093677, AP001194
S/G/Y/R/B/O	NT_006216	AC093677	76421532	3	RH101940	4	427.79					1		AC013573, AC093677, AP001194
S/G/Y/R/B/O	NT_006216	AC097470	76461488	3
S/G/Y/R/B/O	NT_006216	AC021180	76625328	1	RH69483	4	427.28					1		AC021180
S/G/Y/R/B/O	NT_006216	AC021180	76685452	1	RH11086	4	215.40					1		AC021180
S/G/Y/R/B/O	NT_006216	AC021180	76687841	1	RH11034	4	429.39					1		AC021180
S/G/Y/R/B/O	NT_006216	AC021180	76693721	1	RH8725			4	4162.00			1		AC021180
S/G/Y/R/B/O	NT_006216	AC096858	76742130	3
S/G/Y/R/B/O	NT_006216		-		RH11071	4	426.08					0	AC108157,	AC008076, AC108157, AP002825, M16110
S/G/Y/R/B/O	NT_006216		-		WI-16095					4	476.60	1	AC079880,	AC023667, AC079880
S/G/Y/R/B/O	NT_006216		-		RH11150	4	428.44					1	AL049829, AL049829, AL132855,	AL049829, AL049829, AL132855, M25162, Z20656
S/G/Y/R/B/O	NT_006216		-		RH17684	4	426.53					0	AC097709,	AC010784, AC046188, AC097709, AF349466
S/G/Y/R/B/O	NT_006216		-		RH17901	4	428.96					0
S/G/Y/R/B/O	NT_006216		-		RH41444	4	425.42					0
S/G/Y/R/B/O	NT_006216		-		RH59185	4	425.21			4	477.10	0	AC095053,	AC095053
S/G/Y/R/B/O	NT_006216		-		TIGR-A005E33					4	477.10	1	AC079880,	AC079880
S/G/Y/R/B/O	NT_006216		-		D4S409					4	477.70	1	AC025934, AC104806,	AC025934, AC104806
S/G/Y/R/B/O	NT_006216		-		RH59401	4	423.07			4	480.60	1	AC079880,	AC007506, AC023667, AC079880
S/G/Y/R/B/O	NT_006216		-		RH75991	4	426.60					0
S/G/Y/R/B/O	NT_006216		-		RH91468	4	423.24					0