Chromosome 4 - RH Maps - Single Contig

Chromosome 4 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_026996	NT_006111	NT_022865	NT_006081	NT_033075	NT_029956	NT_006051	NT_033060
NT_033064	NT_006362	NT_006307	NT_006342	NT_029958	NT_016407	NT_033056	NT_030649
NT_006344	NT_023072	NT_033076	NT_006350	NT_006285	NT_006316	NT_023052	NT_006189
NT_022794	NT_006305	NT_022751	NT_022995	NT_033067	NT_006098	NT_029274	NT_033069
NT_016297	NT_022782	NT_033059	NT_006238	NT_022831	NT_022853	NT_022850	NT_022778
NT_022852	NT_033063	NT_022813	NT_022836	NT_022862	NT_006303	NT_030640	NT_033073
NT_006281	NT_006216	NT_033072	NT_022760	NT_006109	NT_006328	NT_022844	NT_030642
NT_006114	NT_030659	NT_006204	NT_033074	NT_023068	NT_006201	NT_006383	NT_006397
NT_033061	NT_033068	NT_006365	NT_028147	NT_028173	NT_006371	NT_025694	NT_031780
NT_016599	NT_031781	NT_016354	NT_033055	NT_033062	NT_033065	NT_006167	NT_006302
NT_022755	NT_022753	NT_022803	NT_022846	NT_022856	NT_022805	NT_022819	NT_022845
NT_006124	NT_022811	NT_006127	NT_006258	NT_016606	NT_029950	NT_028160	NT_029954
NT_022851	NT_022832	NT_015169	NT_006129	NT_022740	NT_029955	NT_022801	NT_022824
NT_006171	NT_022776	NT_022768	NT_006198	NT_006257	NT_022775	NT_006118	NT_022792
NT_006256	NT_006169	NT_022841	NT_033070	NT_022800	NT_033066	NT_033071	NT_028146
NT_029961	NT_025688

NT_006171

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_006171	AC068366	167415265	1
S/G/Y/R/B/O	NT_006171	AC104793	167475226	3	RH35825	4	647.52					1	AC068366,	AC068366, AC104793
S/G/Y/R/B/O	NT_006171	AC104793	167475318	3	RH26334	4	647.52					1	AC068366,	AC068366, AC104793
S/G/Y/R/B/O	NT_006171	AC104793	167511164	3	WI-5113					4	705.50	1	AC068366,	AC068366, AC104793
S/G/Y/R/B/O	NT_006171	AC079227	167691387	3	RH258			4	8776.00			1		AC079227
S/G/Y/R/B/O	NT_006171	AC079227	167691387	3	RH74462	4	646.19					1		AC079227
S/G/Y/R/B/O	NT_006171	AC084281	167810481	3	RH59560	4	648.62	4	8776.00	4	710.40	1		AC084281
S/G/Y/R/B/O	NT_006171	AC084281	167810585	3	RH67404	4	647.62					1		AC084281
S/G/Y/R/B/O	NT_006171	AC084281	167843305	3	CHLC.GATA4C05.172					4	708.40	1		AC084281
S/G/Y/R/B/O	NT_006171	AC084281	167843305	3	CHLC.GATA4C06					4	709.90	1		AC084281
S/G/Y/R/B/O	NT_006171	AC084281	167857986	3	CHLC.GATA5B09.935					4	713.10	1		AC084281
S/G/Y/R/B/O	NT_006171	AC105251	167863748	3
S/G/Y/R/B/O	NT_006171	AC096717	167906719	3
S/G/Y/R/B/O	NT_006171	AC023136	168148597	3	RH98482	4	647.58					1		AC023136
S/G/Y/R/B/O	NT_006171	AC108163	168197339	3
S/G/Y/R/B/O	NT_006171	AC108162	168290643	1
S/G/Y/R/B/O	NT_006171	AC105284	168474267	1
S/G/Y/R/B/O	NT_006171	AC114770	168560688	1	RH59054	4	650.75			4	713.10	1	AC105284,	AC079960, AC105284, AC114770
S/G/Y/R/B/O	NT_006171	AC097487	168575022	1
S/G/Y/R/B/O	NT_006171	AC107055	168739542	3	WI-4847					4	721.00	1	AC097487,	AC097487, AC107055
S/G/Y/R/B/O	NT_006171	AC093874	168881320	3
S/G/Y/R/B/O	NT_006171	AC097507	169082299	3	D4S1566					4	719.00	1		AC097507
S/G/Y/R/B/O	NT_006171	AC097502	171502749	1	RH12735	4	659.31					1		AC097502
S/G/Y/R/B/O	NT_006171	AC097502	171502837	1	RH25711	4	656.17					1
S/G/Y/R/B/O	NT_006171	AC097379	169239007	3
S/G/Y/R/B/O	NT_006171	AC005150	169474138	3	RH103724	4	653.40					1		AC005150
S/G/Y/R/B/O	NT_006171	AC021134	169491589	3
S/G/Y/R/B/O	NT_006171	AC111192	169625281	1
S/G/Y/R/B/O	NT_006171	AC084752	169741442	3
S/G/Y/R/B/O	NT_006171	AC022272	169860574	3	RH59230	4	655.65			4	716.30	1		AC022272
S/G/Y/R/B/O	NT_006171	AC022272	169874959	3	RH8340			4	8814.00			1		AC022272
S/G/Y/R/B/O	NT_006171	AC022272	169900198	3	RH59527	4	655.65			4	716.30	1		AC022272
S/G/Y/R/B/O	NT_006171	AC079238	170057044	3	RH13948			4	8821.00			1		AC079238, AC114976, X99269
S/G/Y/R/B/O	NT_006171	AC079238	170058605	3	RH11051	4	650.95					1		AC079238, X99269
S/G/Y/R/B/O	NT_006171	AC079238	170064666	3	RH68994	4	653.40					1		AC079238, AC114976
S/G/Y/R/B/O	NT_006171	AC115113	170096106	3
S/G/Y/R/B/O	NT_006171	AC093788	170251804	3	RH101955	4	652.78					1		AC093788
S/G/Y/R/B/O	NT_006171	AC093788	170252281	3	RH98823	4	655.65					1		AC093788
S/G/Y/R/B/O	NT_006171	AC093788	170256775	3	RH59321	4	655.45			4	716.40	1		AC093788
S/G/Y/R/B/O	NT_006171	AC093788	170256782	3	RH59009	4	654.82			4	714.70	1		AC093788
S/G/Y/R/B/O	NT_006171	AC093788	170256922	3	RH36810	4	654.82					1		AC093788
S/G/Y/R/B/O	NT_006171	AC093788	170256973	3	RH93599	4	655.65					1		AC093788
S/G/Y/R/B/O	NT_006171	AC093788	170259175	3	RH59255	4	655.65	4	8849.00	4	717.10	1		AC093788
S/G/Y/R/B/O	NT_006171	AC093788	170260708	3	RH26737	4	663.77					1		AC093788
S/G/Y/R/B/O	NT_006171	AC093788	170263762	3	WI-3428					4	706.90	1		AC093788
S/G/Y/R/B/O	NT_006171	AC098867	170372817	3	RH36916	4	656.48					1		AC098867
S/G/Y/R/B/O	NT_006171	AC092631	170421857	1
S/G/Y/R/B/O	NT_006171	AC112247	170647669	1	RH28437	4	661.85					1		AC112247
S/G/Y/R/B/O	NT_006171	AC079232	170693901	3
S/G/Y/R/B/O	NT_006171	AC105250	170893398	3	GCT16B04					4	718.30	1		AC105250

NT_006171 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_006171	AC105250	170929075	3	RH80847	12	213.98					2	AC089987,	AC089987, AC105250
S/G/Y/R/B/O	NT_006171	AC079240	170931631	3
S/G/Y/R/B/O	NT_006171	AC096563	171132478	3
S/G/Y/R/B/O	NT_006171	AC068548	171255956	3	WI-5361					4	718.30	1		AC068548
S/G/Y/R/B/O	NT_006171	AC074198	171280897	3
S/G/Y/R/B/O	NT_006171	AC104620	171461075	1
S/G/Y/R/B/O	NT_006171	AC080079	171628661	3
S/G/Y/R/B/O	NT_006171	AC093842	171844227	3	RH30885			4	8895.00			1		AC093842
S/G/Y/R/B/O	NT_006171	AC012504	171880726	3	RH59600	4	661.02	4	8902.00	4	719.30	1		AC012504
S/G/Y/R/B/O	NT_006171	AC012504	171880786	3	RH67321	4	660.82					1		AC012504
S/G/Y/R/B/O	NT_006171	AC012504	171880943	3	RH71421	4	657.80					1		AC012504
S/G/Y/R/B/O	NT_006171	AC012504	171880985	3	RH11130	4	655.65					1		AC012504
S/G/Y/R/B/O	NT_006171	AC012504	171881010	3	RH41295	4	657.80					1		AC012504
S/G/Y/R/B/O	NT_006171	AC012504	171973383	3	RH33081			12	567.00	2	147.70	2	AC011742,	AC011742
S/G/Y/R/B/O	NT_006171	AC012504	172035868	3	RH32715			4	8902.00			1		AC012504
S/G/Y/R/B/O	NT_006171	AC012504	172035912	3	RH26433	4	662.02					1		AC012504
S/G/Y/R/B/O	NT_006171	AC012504	172042443	3	RH28494	4	661.95					1		AC012504
S/G/Y/R/B/O	NT_006171	AC107059	172056088	3
S/G/Y/R/B/O	NT_006171	AC055120	172101161	3	RH35735	X	113.43					4	AC023001, AC107059, AC107391, AC110373, Z73986,	AC023001, AC055120, AC107059, AC107391, AC110373, AL672207, X78211, X78713, X78714, Z73986
S/G/Y/R/B/O	NT_006171	AC055120	172118902	3	RH65465	4	543.80					3	AC107391, AC110373,	AC055120, AC107391, AC110373
S/G/Y/R/B/O	NT_006171	AC108465	172300259	1	RH59231	4	655.29	4	8898.00	4	717.80	1		AC108465
S/G/Y/R/B/O	NT_006171	AC106872	172408766	3	RH103332	4	657.90					2	AC023772, AC108465,	AC023772, AC106872, AC106872, AC108465
S/G/Y/R/B/O	NT_006171	AC023772	172463552	3	RH103332	4	657.90					2	AC106872, AC106872, AC108465,	AC023772, AC106872, AC106872, AC108465
S/G/Y/R/B/O	NT_006171	AC023772	172523385	3	RH59420	4	656.66	4	8902.00	4	717.10	1	AC104620,	AC023772, AC104620
S/G/Y/R/B/O	NT_006171		-		RH12318	4	654.14					0
S/G/Y/R/B/O	NT_006171		-		RH2103			4	8662.00			1	AC107219,	AC107219, D63861
S/G/Y/R/B/O	NT_006171		-		AFM349XC1					4	711.50	1	AC079617,	AC079617
S/G/Y/R/B/O	NT_006171		-		RH41274	4	655.65					0
S/G/Y/R/B/O	NT_006171		-		RH46548	4	654.20					0	AC079227,	AC079227
S/G/Y/R/B/O	NT_006171		-		RH6054	4	659.31					1	AC107074,	AC107074
S/G/Y/R/B/O	NT_006171		-		RH32961			4	8657.00	4	711.50	1	AC107219,	AC107219
S/G/Y/R/B/O	NT_006171		-		RH38387			4	8670.00			1	AC105383,	AC105383
S/G/Y/R/B/O	NT_006171		-		WI-10831					4	711.50	1	AC097466,	AC097466
S/G/Y/R/B/O	NT_006171		-		RH38398			4	8670.00			2	AC009993, AC012233, AC110420,	AC009993, AC012233, AC099646, AC110420
S/G/Y/R/B/O	NT_006171		-		RH8578			4	8675.00			1	AC109823,	AC015874, AC022175, AC109823