Home    Genome Browser    BLAT Search    Help
  Chromosome 4 - RH Maps - Single Contig
 

Chromosome 4 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_026996 NT_006111 NT_022865 NT_006081 NT_033075 NT_029956 NT_006051 NT_033060
NT_033064 NT_006362 NT_006307 NT_006342 NT_029958 NT_016407 NT_033056 NT_030649
NT_006344 NT_023072 NT_033076 NT_006350 NT_006285 NT_006316 NT_023052 NT_006189
NT_022794 NT_006305 NT_022751 NT_022995 NT_033067 NT_006098 NT_029274 NT_033069
NT_016297 NT_022782 NT_033059 NT_006238 NT_022831 NT_022853 NT_022850 NT_022778
NT_022852 NT_033063 NT_022813 NT_022836 NT_022862 NT_006303 NT_030640 NT_033073
NT_006281 NT_006216 NT_033072 NT_022760 NT_006109 NT_006328 NT_022844 NT_030642
NT_006114 NT_030659 NT_006204 NT_033074 NT_023068 NT_006201 NT_006383 NT_006397
NT_033061 NT_033068 NT_006365 NT_028147 NT_028173 NT_006371 NT_025694 NT_031780
NT_016599 NT_031781 NT_016354 NT_033055 NT_033062 NT_033065 NT_006167 NT_006302
NT_022755 NT_022753 NT_022803 NT_022846 NT_022856 NT_022805 NT_022819 NT_022845
NT_006124 NT_022811 NT_006127 NT_006258 NT_016606 NT_029950 NT_028160 NT_029954
NT_022851 NT_022832 NT_015169 NT_006129 NT_022740 NT_029955 NT_022801 NT_022824
NT_006171 NT_022776 NT_022768 NT_006198 NT_006257 NT_022775 NT_006118 NT_022792
NT_006256 NT_006169 NT_022841 NT_033070 NT_022800 NT_033066 NT_033071 NT_028146
NT_029961 NT_025688


  NT_006302
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006302AC0243531278906031          
S/G/Y/R/B/O NT_006302AC1136171278921001          
S/G/Y/R/B/O NT_006302AC0926611280388533RH165224541.37    1AC024353, AC024353, AC092661
S/G/Y/R/B/O NT_006302AC0926611280522973WI-4811    4588.701AC024353, AC024353, AC092661
S/G/Y/R/B/O NT_006302AC1095921281401843          
S/G/Y/R/B/O NT_006302AC1080561282244983          
S/G/Y/R/B/O NT_006302AC1082011284918513RH590514543.91  4592.201 AC108201
S/G/Y/R/B/O NT_006302AC1080271286597381          
S/G/Y/R/B/O NT_006302AC0138261286609511          
S/G/Y/R/B/O NT_006302AC1122271312648121RH38346  46725.004597.901 AC112227
S/G/Y/R/B/O NT_006302AC0938161287191243RH912284557.14    1 AC093816
S/G/Y/R/B/O NT_006302AC0938671288319023          
S/G/Y/R/B/O NT_006302AC0059611289419521          
S/G/Y/R/B/O NT_006302AC1052541290331893RH487524557.24    1AC018954, AC018954, AC105254
S/G/Y/R/B/O NT_006302AC1080411291472081RH939714556.41    1AC105254, AC105254, AC108041
S/G/Y/R/B/O NT_006302AC1080411291495661RH178534557.83    1AC105254, AC105254, AC108041
S/G/Y/R/B/O NT_006302AC1080411291515001RH453954556.41    1AC105254, AC105254, AC108041
S/G/Y/R/B/O NT_006302AC1080411291535691RH33795  46779.00  1 AC108041
S/G/Y/R/B/O NT_006302AC0189541291994141          
S/G/Y/R/B/O NT_006302AC1047951292036153          
S/G/Y/R/B/O NT_006302AC1040681292963663          
S/G/Y/R/B/O NT_006302AC0257411295051393RH413454556.41    1 AC025741
S/G/Y/R/B/O NT_006302AC0257411295552003GCT16C02    4601.101 AC025741
S/G/Y/R/B/O NT_006302AC0240941296698223RH649075524.56    3AC011404, AC108080, AJ239320, AC011404, AC024094, AC093651, AC108080, AJ239320
S/G/Y/R/B/O NT_006302AC0240941296915353RH59544551.60  4601.101 AC024094, AC093651
S/G/Y/R/B/O NT_006302AC0734751297236723          
S/G/Y/R/B/O NT_006302AC1046521298946773          
S/G/Y/R/B/O NT_006302AC0243501300249831          
S/G/Y/R/B/O NT_006302AC1100791301188241RH37965  46643.00  1AC024350, AC024350, AC110079
S/G/Y/R/B/O NT_006302AC1100791301191301RH589804544.84  4594.401AC024350, AC024350, AC110079
S/G/Y/R/B/O NT_006302AC1080301302132133RH1043214546.46    1 AC108030
S/G/Y/R/B/O NT_006302AC0967451303451913RH592104546.46  4597.701 AC096745
S/G/Y/R/B/O NT_006302AC0967451303778383RH489154546.46    1 AC096745
S/G/Y/R/B/O NT_006302AC0967451304269263RH8560  46631.00  1 AC096745
S/G/Y/R/B/O NT_006302AC0967451304271943RH487514546.17    1 AC096745
S/G/Y/R/B/O NT_006302AC0967451304276993RH8565  46647.00  1 AC096745
S/G/Y/R/B/O NT_006302AC0967451304285383RH8542  46638.00  1 AC096745
S/G/Y/R/B/O NT_006302AC0967451304294633RH412844546.39    1 AC096745
S/G/Y/R/B/O NT_006302AC0967451304294753RH419264546.17    1 AC096745
S/G/Y/R/B/O NT_006302AC0967451304304653RH803824556.73    1 AC096745
S/G/Y/R/B/O NT_006302AC0967451304314073RH14725  46647.00  1 AC096745
S/G/Y/R/B/O NT_006302AC0967451304315693RH171464556.93    1 AC096745
S/G/Y/R/B/O NT_006302AC0967451304324683RH594904546.3946633.004597.901 AC096745
S/G/Y/R/B/O NT_006302AC0967451304325843RH593524546.39  4597.901 AC096745
S/G/Y/R/B/O NT_006302AC0967451304326023RH255684546.39    1 AC096745
S/G/Y/R/B/O NT_006302AC0967451304331053RH590764546.1746638.004595.901 AC096745
S/G/Y/R/B/O NT_006302AC0967451304341403RH939974546.24    1 AC096745
S/G/Y/R/B/O NT_006302AC1070481304568003RH912504546.46    1AC108164, AC107048, AC108164
S/G/Y/R/B/O NT_006302AC1081641305821461RH8564  46647.00  1AC092656, AC092656, AC108164, AF267997
S/G/Y/R/B/O NT_006302AC1081641306230271RH151144556.93    1AC092656, AC092656, AC108164


  NT_006302 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006302AC1081641306333091RH456624546.39    1AC092656, AC008077, AC092656, AC108164
S/G/Y/R/B/O NT_006302AC1081641306592261RH593564546.3946699.004597.701AC092656, AC092656, AC108164
S/G/Y/R/B/O NT_006302AC1081641306594731RH165784545.92    1AC092656, AC092656, AC108164
S/G/Y/R/B/O NT_006302AC0926561306903341RH990904546.39    1 AC092656
S/G/Y/R/B/O NT_006302AC0926561306912381RH451254546.39    1 AC092656
S/G/Y/R/B/O NT_006302AC0926561306931551RH123614545.32    1 AC092656
S/G/Y/R/B/O NT_006302AC0926561306937951RH162694546.39    1 AC092656
S/G/Y/R/B/O NT_006302AC0926561306945051RH595474556.62  4597.901 AC092656
S/G/Y/R/B/O NT_006302AC0926561307047201RH659624546.39    1 AC092656
S/G/Y/R/B/O NT_006302AC0926561307147981RH592904546.46  4597.701 AC092656, M18079
S/G/Y/R/B/O NT_006302AC0926561307155771RH74668  46693.00  1 AC092656, M18079
S/G/Y/R/B/O NT_006302AC1103731312809501RH654654543.80    3AC055120, AC107391, AC055120, AC107391, AC110373
S/G/Y/R/B/O NT_006302AC1103731312991001RH35735X113.43    4AC023001, AC055120, AC107059, AC107391, Z73986, AC023001, AC055120, AC107059, AC107391, AC110373, AL672207, X78211, X78713, X78714, Z73986
S/G/Y/R/B/O NT_006302AC1088661309078523WI-5774    4601.201AC080170, AC080170, AC108866
S/G/Y/R/B/O NT_006302AC0801701309165771          
S/G/Y/R/B/O NT_006302AC0252371309193941          
S/G/Y/R/B/O NT_006302AC0971731310238583RH809744548.24    1AC025237, AB056160, AC025237, AC097173
S/G/Y/R/B/O NT_006302AC0971731310268533RH757544546.13    1AC025237, AC025237, AC097173
S/G/Y/R/B/O NT_006302AC0971731310276833RH695054555.58    1AC025237, AC025237, AC097173
S/G/Y/R/B/O NT_006302AC0971731310514573WI-10839    4599.201AC025237, AC025237, AC097173
S/G/Y/R/B/O NT_006302AC1152241310609951          
S/G/Y/R/B/O NT_006302AC0937521313868003RH992014546.39    2AC107391, AC110373, AC093752, AC107391, AC110373
S/G/Y/R/B/O NT_006302AC0937521314005283RH592224546.35  4596.601 AC093752
S/G/Y/R/B/O NT_006302AC0937521314006473RH170034546.35    1 AC093752
S/G/Y/R/B/O NT_006302AC0937521314026893RH992844546.35    1 AC093752
S/G/Y/R/B/O NT_006302AC0937521314102743RH458604546.17    1 AC093752
S/G/Y/R/B/O NT_006302AC0937521314275073RH681014556.73    1 AC093752
S/G/Y/R/B/O NT_006302AC0800891314634413RH595694546.4646708.004597.701 AC080089
S/G/Y/R/B/O NT_006302AC0800891314635313RH8706  46676.00  1 AC080089
S/G/Y/R/B/O NT_006302AC0800871317167231          
S/G/Y/R/B/O NT_006302AC1109991317224013          
S/G/Y/R/B/O NT_006302AC0967621318677493RH805784543.37    1 AC068959, AC073025, AC096762, AC108928
S/G/Y/R/B/O NT_006302AC0967621318917403RH258174543.27    1 AC068959, AC073025, AC096762, AC108928
S/G/Y/R/B/O NT_006302AC0967621318922313RH256734541.04    1 AC068959, AC073025, AC096762, AC108928
S/G/Y/R/B/O NT_006302AC0967621319191273RH700024543.27    1 AC073025, AC096762
S/G/Y/R/B/O NT_006302AC0926701320309323          
S/G/Y/R/B/O NT_006302AC0871091321868831          
S/G/Y/R/B/O NT_006302 - RH100444556.9346643.00  1AC013554, AC022291, AC013554, AC022291
S/G/Y/R/B/O NT_006302 - RH110744556.10    0 M18079
S/G/Y/R/B/O NT_006302 - RH413974551.50    0  
S/G/Y/R/B/O NT_006302 - RH589824557.41    1AC022489, AC022489
S/G/Y/R/B/O NT_006302 - RH591604546.17  4595.800AC080089, AC080089
S/G/Y/R/B/O NT_006302 - RH593884557.24    1AC021205, AC021205
S/G/Y/R/B/O NT_006302 - RH755544557.31    0