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  Chromosome 5 - RH Maps - Single Contig
 

Chromosome 5 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_016714
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_016714AC0923181426262851          
S/G/Y/R/B/O NT_016714AC1163561426285211          
S/G/Y/R/B/O NT_016714AC1067751427448673RH985725519.20    1AC004021, AC116356, AC004021, AC106775, AC116356
S/G/Y/R/B/O NT_016714AC1067751427463573RH601555519.20  5427.701AC004021, AC116356, AC004021, AC106775, AC116356
S/G/Y/R/B/O NT_016714AC1067751427481733RH1019865519.20    1AC004021, AC116356, AC004021, AC106775, AC116356
S/G/Y/R/B/O NT_016714AC1067751427504753AFM350YB1    5427.701AC004021, AC116356, AC004021, AC106775, AC116356
S/G/Y/R/B/O NT_016714AC1067751427595633RH63925519.20  5427.701AC004021, AC116356, AC004021, AC106775, AC116356
S/G/Y/R/B/O NT_016714AC0040211427887993          
S/G/Y/R/B/O NT_016714AC1067911428779993RH986725520.62    2AC073206, AC073206, AC106791
S/G/Y/R/B/O NT_016714AC1067911428789353RH126465520.62    2AC073206, AC073206, AC106791
S/G/Y/R/B/O NT_016714AC1067911428791903RH172295520.62    2AC073206, AC073206, AC106791
S/G/Y/R/B/O NT_016714AC1067911428802413RH916535520.62    2AC073206, AC073206, AC106791
S/G/Y/R/B/O NT_016714AC1067911428810723RH701635520.52    1 AC106791
S/G/Y/R/B/O NT_016714AC0048201429189713RH464635511.48    2AC073206, AC106791, AC004820, AC073206, AC106791
S/G/Y/R/B/O NT_016714AC0048201429406363RH659515524.26    2AC073206, AC106791, AC004820, AC073206, AC106791
S/G/Y/R/B/O NT_016714AC0060841430044083RH478635524.56    2AC004820, AC073206, AC106791, AC004820, AC006084, AC073206, AC106791
S/G/Y/R/B/O NT_016714AC0060841430104223RH924755524.46    2AC004820, AC073206, AC106791, AC004820, AC006084, AC073206, AC106791
S/G/Y/R/B/O NT_016714AC0060841430149293RH678725522.43    2AC004820, AC073206, AC106791, AC004820, AC006084, AC073206, AC106791
S/G/Y/R/B/O NT_016714AC0060841430151073RH1031505524.56    2AC004820, AC073206, AC106791, AC004820, AC006084, AC073206, AC106791
S/G/Y/R/B/O NT_016714AC0060841430655003RH1033365524.46    1AC106753, AC006084, AC106753
S/G/Y/R/B/O NT_016714AC0060841430655153RH411035522.43    1AC106753, AC006084, AC106753
S/G/Y/R/B/O NT_016714AC0060841430662723RH411055522.43    1AC106753, AC006084, AC106753
S/G/Y/R/B/O NT_016714AC1067531431089352          
S/G/Y/R/B/O NT_016714AC1133411431373191          
S/G/Y/R/B/O NT_016714AC1133821432427211RH480325524.46    1AC004826, AC004826, AC021854, AC109442, AC113382
S/G/Y/R/B/O NT_016714AC1133821432667861RH992545522.43    1AC004826, AC004826, AC021854, AC109442, AC113382
S/G/Y/R/B/O NT_016714AC1133821432837631RH13860  55259.00  1AC004826, AC004826, AC109442, AC113382
S/G/Y/R/B/O NT_016714AC1133821432838261RH173265522.43    1AC004826, AC004826, AC109442, AC113382
S/G/Y/R/B/O NT_016714AC0048261433142373RH486515524.26    1AC092317, AC106752, AC004826, AC092317, AC106752, AC109442
S/G/Y/R/B/O NT_016714AC0048261433145133RH603205524.56  5433.901AC092317, AC106752, AC004826, AC092317, AC106752, AC109442
S/G/Y/R/B/O NT_016714AC0048261433146633RH917515524.46    1AC092317, AC106752, AC004826, AC092317, AC106752, AC109442
S/G/Y/R/B/O NT_016714AC0048261433152613RH484615524.56    1AC106752, AC004826, AC106752, AC109442
S/G/Y/R/B/O NT_016714AC0048261433158163RH601635524.26  5432.101AC106752, AC004826, AC106752, AC109442
S/G/Y/R/B/O NT_016714AC1067521433694372RH35269  55268.00  1AC092317, AC092317, AC106752
S/G/Y/R/B/O NT_016714AC1067521433792252RH992215524.46    1AC092317, AC092317, AC106752
S/G/Y/R/B/O NT_016714AC1041161434148532RH691265522.43    1AC092317, AC106752, AC092317, AC104116, AC106752
S/G/Y/R/B/O NT_016714AC1041161434148562RH412265522.53    1AC092317, AC106752, AC092317, AC104116, AC106752
S/G/Y/R/B/O NT_016714AC0923171434061941          
S/G/Y/R/B/O NT_016714AC0048211434666433RH693485524.46    1AC104116, AC106752, AC004821, AC104116, AC106752
S/G/Y/R/B/O NT_016714AC0048211434762243RH485535524.46    1AC104116, AC106752, AC004821, AC104116, AC106752
S/G/Y/R/B/O NT_016714AC0048211434790263RH127245524.56    1AC104116, AC106752, AC004821, AC104116, AC106752
S/G/Y/R/B/O NT_016714AC0048211434804993RH783295524.46    1AC104116, AC106752, AC004821, AC104116, AC106752
S/G/Y/R/B/O NT_016714AC0048211434909103RH688175522.43    1AC104116, AC106752, AC004821, AC104116, AC106752
S/G/Y/R/B/O NT_016714AC0048211435212453RH361675524.46    1AC104116, AC113403, AC004821, AC104116, AC113403
S/G/Y/R/B/O NT_016714AC1134031435607931WI-4406    5432.201AC004821, AC004821, AC113403
S/G/Y/R/B/O NT_016714AC1134031435662581RH932285524.46    1AC004821, AC004821, AC113403
S/G/Y/R/B/O NT_016714AC1134031435761761RH604145524.56  5433.901AC004821, AC004821, AC113403
S/G/Y/R/B/O NT_016714AC1134031435973491RH598495524.46  5432.201AC004821, AC004821, AC113403, AJ243425
S/G/Y/R/B/O NT_016714AC1134031435976251RH14134  55273.00  1AC004821, AC004821, AC113403, AJ243425
S/G/Y/R/B/O NT_016714AC1134031436406671RH423445522.43  5433.801AC011381, AC011381, AC113403, AF095901


  NT_016714 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_016714AC1134031436406671RH30378  55277.00  1AC011381, AC011381, AC113403, AF095901
S/G/Y/R/B/O NT_016714AC0113811436841212RH97975522.43    1AC113403, AC011381, AC011385, AC113403
S/G/Y/R/B/O NT_016714AC0113811436846152RH249775524.46    1AC113403, AC011381, AC011385, AC113403
S/G/Y/R/B/O NT_016714AC1133401436983713RH474395526.20    1AC011381, AC011381, AC011385, AC113340
S/G/Y/R/B/O NT_016714AC0104531437825223          
S/G/Y/R/B/O NT_016714AC1094401438662023          
S/G/Y/R/B/O NT_016714AC0342431439574543RH163675524.54    1AC011405, AC011405, AC034243
S/G/Y/R/B/O NT_016714AC0342431439592423RH603685526.62  5435.601AC011405, AC011405, AC034243
S/G/Y/R/B/O NT_016714AC0342431439597193RH31871  55131.00  1AC011405, AC011405, AC034243
S/G/Y/R/B/O NT_016714AC0342431439597233RH911855526.62    1AC011405, AC011405
S/G/Y/R/B/O NT_016714AC0342431439598313RH250905524.54    1AC011405, AC011405, AC034243
S/G/Y/R/B/O NT_016714AC0114051440194963RH361325524.54    1 AC011405
S/G/Y/R/B/O NT_016714AC0114051440242553RH37873  55241.00  1 AC011405
S/G/Y/R/B/O NT_016714AC0114051440246313RH114375524.54    1 AC011405
S/G/Y/R/B/O NT_016714AC0114051440246343RH702575524.54    1 AC011405
S/G/Y/R/B/O NT_016714AC0113781441416632          
S/G/Y/R/B/O NT_016714AC0734841441817041          
S/G/Y/R/B/O NT_016714AC0086141442331043          
S/G/Y/R/B/O NT_016714AC0114041444404043RH649075524.56    3AC024094, AC108080, AJ239320, AC011404, AC024094, AC093651, AC108080, AJ239320
S/G/Y/R/B/O NT_016714AC0114041444410993RH600795526.62  5435.501AC108080, AC011404, AC108080
S/G/Y/R/B/O NT_016714AC0114041444412993RH671455526.62    1AC108080, AC011404, AC108080
S/G/Y/R/B/O NT_016714AC0114041444413173RH264815526.62    1AC108080, AC011404, AC108080
S/G/Y/R/B/O NT_016714AC0114041444416663RH913345526.30    1AC108080, AC011404, AC108080
S/G/Y/R/B/O NT_016714AC1080801445203483RH600785529.31  5437.801 AC108080
S/G/Y/R/B/O NT_016714AC1080801445219363RH483045527.66    1 AC108080
S/G/Y/R/B/O NT_016714AC1080801445224373IB2038    5437.001 AC108080
S/G/Y/R/B/O NT_016714AC1080801445224373RH599135528.17    1 AC108080
S/G/Y/R/B/O NT_016714AC1080801445293923RH663105528.17    1 AC108080
S/G/Y/R/B/O NT_016714 - RH445685522.43    0  
S/G/Y/R/B/O NT_016714 - WI-14299    5437.000  
S/G/Y/R/B/O NT_016714 - RH484125524.46    0  
S/G/Y/R/B/O NT_016714 - RH914275526.30    0AC011405, AC011405
S/G/Y/R/B/O NT_016714 - RH933435524.46    0