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  Chromosome 5 - RH Maps - Single Contig
 

Chromosome 5 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_006665
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006665AC024429595243711          
S/G/Y/R/B/O NT_006665AC116606595255423          
S/G/Y/R/B/O NT_006665AC094101597984083CHLC.GATA23C05    5189.301AC008786, AC008786, AC094101
S/G/Y/R/B/O NT_006665AC008786598027203          
S/G/Y/R/B/O NT_006665AC016604599793743RH803  52118.00  1 AC010391, AC016604
S/G/Y/R/B/O NT_006665AC016604599793743RH132385281.29    1 AC010391, AC016604
S/G/Y/R/B/O NT_006665AC008926601540693RH1403  52140.00  1AC008814, AC025179, AC008814, AC008926, AC025179, AC034249
S/G/Y/R/B/O NT_006665AC008926601540713WI-13092    5189.901AC008814, AC025179, AC008814, AC008926, AC025179, AC034249
S/G/Y/R/B/O NT_006665AC008926601540713RH599225281.29    1AC008814, AC025179, AC008814, AC008926, AC025179, AC034249
S/G/Y/R/B/O NT_006665AC008814601968323RH411765279.95    1AC025179, AC008814, AC025179, AC034249
S/G/Y/R/B/O NT_006665AC034250602697682          
S/G/Y/R/B/O NT_006665AC008538602938991          
S/G/Y/R/B/O NT_006665AC025179602977421          
S/G/Y/R/B/O NT_006665AC091830602988941          
S/G/Y/R/B/O NT_006665AC020733603049721          
S/G/Y/R/B/O NT_006665AC021601603093641          
S/G/Y/R/B/O NT_006665AC109486603130561          
S/G/Y/R/B/O NT_006665AC016642603336533          
S/G/Y/R/B/O NT_006665AC008852605858373RH653695294.52    2AC008790, AC034225, AC066693, AC008790, AC008852, AC034225, AC066693
S/G/Y/R/B/O NT_006665AC008852605885583RH30911  52136.00  2AC008790, AC034225, AC066693, AC008790, AC008852, AC034225, AC066693
S/G/Y/R/B/O NT_006665AC008852605937063RH168445267.85    2AC008790, AC066693, AC008790, AC008852, AC066693
S/G/Y/R/B/O NT_006665AC008790606185453          
S/G/Y/R/B/O NT_006665AC022128607036243RH174645286.96    2AC034225, AC092343, AC022128, AC026095, AC034225, AC092343
S/G/Y/R/B/O NT_006665AC022128607037853RH784545289.05    2AC034225, AC092343, AC022128, AC026095, AC034225, AC092343
S/G/Y/R/B/O NT_006665AC092343607088483RH1829  52136.00  2AC034225, AC026095, AC034225, AC092343
S/G/Y/R/B/O NT_006665AC092343608254173RH599385290.97    1AC008829, AC008829, AC092343
S/G/Y/R/B/O NT_006665AC092343608254173WI-16394    5192.201AC008829, AC008829, AC092343
S/G/Y/R/B/O NT_006665AC008829608840893RH488965290.42    1 AC008829, AC022125, AC022375
S/G/Y/R/B/O NT_006665AC008829609371603RH365105290.97    1AC008833, AC008829, AC008833, AC016600, AC016622, AC022125
S/G/Y/R/B/O NT_006665AC008829609721273RH411555264.93    1AC008833, AC008829, AC008833, AC016600, AC016622, AC016624, AC020975, AC022125, AC022375
S/G/Y/R/B/O NT_006665AC008833609756933          
S/G/Y/R/B/O NT_006665AC008791611357953CHLC.GATA67D03    5193.801 AC016614
S/G/Y/R/B/O NT_006665AC079007611763791          
S/G/Y/R/B/O NT_006665AC008804612115793          
S/G/Y/R/B/O NT_006665AC027558613010831          
S/G/Y/R/B/O NT_006665AC012315613525663RH697505294.48    1 AC008111, AC012315
S/G/Y/R/B/O NT_006665AC012315613739073RH657385292.81    1 AC008111, AC012315
S/G/Y/R/B/O NT_006665AC012315613950593RH361735292.28    1 AC008111, AC012315
S/G/Y/R/B/O NT_006665AC012315613986793RH1036545295.39    1 AC008111, AC012315
S/G/Y/R/B/O NT_006665AC012315614902443RH597655292.97  5195.001AC027322, AC012315, AC027322
S/G/Y/R/B/O NT_006665AC027322614996653RH1027055266.30    1 AC027322
S/G/Y/R/B/O NT_006665AC027322615780433RH600925292.28  5206.201AC026693, AC026693, AC027322
S/G/Y/R/B/O NT_006665AC026693616356733          
S/G/Y/R/B/O NT_006665AC011929616618541          
S/G/Y/R/B/O NT_006665AC034225616761042RH1829  52136.00  2AC092343, AC026095, AC034225, AC092343
S/G/Y/R/B/O NT_006665AC034225616813152RH174645286.96    2AC022128, AC092343, AC022128, AC026095, AC034225, AC092343
S/G/Y/R/B/O NT_006665AC034225616814282RH784545289.05    2AC022128, AC092343, AC022128, AC026095, AC034225, AC092343
S/G/Y/R/B/O NT_006665AC066693617491361RH653695294.52    2AC008790, AC008852, AC034225, AC008790, AC008852, AC034225, AC066693
S/G/Y/R/B/O NT_006665AC066693617518471RH30911  52136.00  2AC008790, AC008852, AC034225, AC008790, AC008852, AC034225, AC066693
S/G/Y/R/B/O NT_006665AC066693617569931RH168445267.85    2AC008790, AC008852, AC008790, AC008852, AC066693


  NT_006665 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006665AC091955618031531          
S/G/Y/R/B/O NT_006665AC034234618052493          
S/G/Y/R/B/O NT_006665AC008934620272053WI-3887    5200.501AC091913, AC008934, AC091840, AC091913
S/G/Y/R/B/O NT_006665AC091913620421051          
S/G/Y/R/B/O NT_006665AC008818621446253          
S/G/Y/R/B/O NT_006665AC016591623061233RH598385296.76  5195.201 AC008879, AC016591, AC022428
S/G/Y/R/B/O NT_006665AC016591623250963RH698915295.16    1 AC008879, AC016591, AC022428
S/G/Y/R/B/O NT_006665AC016591623795313RH169755295.39    1AC109133, AC016591, AC109133
S/G/Y/R/B/O NT_006665AC109133624245622          
S/G/Y/R/B/O NT_006665AC109579624805093RH650405296.99    1AC020733, AC109133, AC020733, AC109133, AC109579
S/G/Y/R/B/O NT_006665AC109579625343813RH981895296.53    1AC020733, AC021601, AC099502, AC109133, AC020733, AC021601, AC099502, AC109133, AC109579
S/G/Y/R/B/O NT_006665AC099502625785742          
S/G/Y/R/B/O NT_006665AC104113626196192          
S/G/Y/R/B/O NT_006665AC109470626562181RH180235296.64    1AC022445, AC104113, AC016435, AC022445, AC104113, AC109470
S/G/Y/R/B/O NT_006665AC109470626562561RH791375297.79    1AC022445, AC104113, AC016435, AC022445, AC104113, AC109470
S/G/Y/R/B/O NT_006665AC022445626741373RH660555297.56    2AC104113, AC109470, AC016435, AC022445, AC104113, AC109470
S/G/Y/R/B/O NT_006665AC022445627023163RH923495299.05    1AC104113, AC109470, AC016435, AC022445, AC104113, AC109470
S/G/Y/R/B/O NT_006665AC073546627139103RH411795299.91    1AC022445, AC026465, AC104113, AC109470, AC016435, AC022445, AC026465, AC073546, AC104113, AC109470
S/G/Y/R/B/O NT_006665AC008498629361553RH1094  52222.00  1AC026425, AC008498, AC026425
S/G/Y/R/B/O NT_006665AC008498629408193RH602815300.60  5213.801AC021603, AC026425, AC008498, AC021603, AC026425
S/G/Y/R/B/O NT_006665AC008498629409293RH156485298.59    2AC021603, AC026425, AL021997, AC008498, AC021603, AC026425, AL021997
S/G/Y/R/B/O NT_006665AC026425630174393          
S/G/Y/R/B/O NT_006665AC021603630280121          
S/G/Y/R/B/O NT_006665AC026465630334311          
S/G/Y/R/B/O NT_006665 - RH412375295.39    2AC008267, AC097313, AC008267, AC097313
S/G/Y/R/B/O NT_006665 - RH13868  52207.00  1AC008836, AC026746, AC026809, AC008836, AC026746, AC026750, AC026809
S/G/Y/R/B/O NT_006665 - RH412505287.08    1AC020728, AC026704, AC091977, AC020728, AC025790, AC026704, AC026737, AC091977, AL355820, M87499
S/G/Y/R/B/O NT_006665 - RH14061  52138.00  1AC017104, AC017104, M60858
S/G/Y/R/B/O NT_006665 - RH597735293.72    1AC008919, AC008919, AC022441, AC027325, AC114927
S/G/Y/R/B/O NT_006665 - RH7962  52138.00  1AC091970, AC091970
S/G/Y/R/B/O NT_006665 - RH598085287.50    1AC112168, AC112168
S/G/Y/R/B/O NT_006665 - RH603195294.41    1AC008435, AC008435
S/G/Y/R/B/O NT_006665 - RH760025289.49    1AC010436, AC008819, AC010436, AC091845, AJ401092
S/G/Y/R/B/O NT_006665 - RH808595287.18    1AC020728, AC026704, AC091977, AC020728, AC025790, AC026704, AC026737, AC091977, AL355820, M87499