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  Chromosome 5 - RH Maps - Single Contig
 

Chromosome 5 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_023132
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023132AC0273091790945671          
S/G/Y/R/B/O NT_023132AC0319871791154511          
S/G/Y/R/B/O NT_023132AC0102391791242552RH603635644.61  5541.602AC010297, AC010239, AC010297
S/G/Y/R/B/O NT_023132AC0102391791247252SGC30272    5539.802AC010297, AC010239, AC010297
S/G/Y/R/B/O NT_023132AC0102391791247252RH599065644.61    2AC010297, AC010239, AC010297
S/G/Y/R/B/O NT_023132AC0086711791545332RH650875633.18    2AC090064, AC008671, AC090064
S/G/Y/R/B/O NT_023132AC0086711792099282RH267355633.05    1 AC008671
S/G/Y/R/B/O NT_023132AC0245611792773043RH933795634.99    1AC008671, AC008671, AC024561
S/G/Y/R/B/O NT_023132AC0245611792777703RH600475634.99  5537.501AC008671, AC008671, AC024561
S/G/Y/R/B/O NT_023132AC0245611792778683RH1778  56157.00  1AC008671, AC008671, AC024561
S/G/Y/R/B/O NT_023132AC0245611793002533RH487255633.18    1 AC024561
S/G/Y/R/B/O NT_023132AC0922711793665833          
S/G/Y/R/B/O NT_023132AC1133421794392623RH1042  56157.00  1AC092271, AC092271, AC113342, AC116355
S/G/Y/R/B/O NT_023132AC1133421794438763RH764655635.09    1AC092271, AC092271, AC113342, AC116355
S/G/Y/R/B/O NT_023132AC1133421794439873RH915745634.89    1AC092271, AC092271, AC113342, AC116355
S/G/Y/R/B/O NT_023132AC0113871795738223RH153115634.99    1 AC007427
S/G/Y/R/B/O NT_023132AC0113871795830993RH805385634.99    1 AC007427, AC011387
S/G/Y/R/B/O NT_023132AC0113871796191423RH109855634.99    1 AC007427, AC011387
S/G/Y/R/B/O NT_023132AC0114101796258083RH603065633.18  5533.701AC011387, AC007427, AC011387, AC011410
S/G/Y/R/B/O NT_023132AC0114101796435053RH456555633.18    1AC011387, AC007427, AC011387, AC011410
S/G/Y/R/B/O NT_023132AC0224401797411783RH923395633.18    1AC011410, AC011358, AC011410, AC022440
S/G/Y/R/B/O NT_023132AC0224261798003833          
S/G/Y/R/B/O NT_023132AC0114001799462773WI-5421    5541.401 AC011400
S/G/Y/R/B/O NT_023132AC0114001799463783WI-4897    5543.201 AC011400
S/G/Y/R/B/O NT_023132AC0932461800138853CHLC.GATA87F10    5533.601AC011400, AC011400, AC093246
S/G/Y/R/B/O NT_023132AC0932461800308003RH462945633.18    1AC011400, AC011400
S/G/Y/R/B/O NT_023132AC0932461800810983RH808945636.01    2AC018737, AC018737, AC093246
S/G/Y/R/B/O NT_023132AC0919801801842033RH913455634.89    1 AC010454, AC091980
S/G/Y/R/B/O NT_023132AC0919801801886863RH167835635.09    1 AC010454, AC091980
S/G/Y/R/B/O NT_023132AC0919801802314503RH659831376.05    4AC010306, AC024038, AL121877, AL355473, AC010152, AC010306, AC024038, AC091980, AL121877, AL355473
S/G/Y/R/B/O NT_023132AC0919801802326343RH270891384.11    3AC010306, AC010362, AL355473, AC010306, AC010362, AC091980, AL355473
S/G/Y/R/B/O NT_023132AC0103061802381711          
S/G/Y/R/B/O NT_023132AC1149361821195341RH1027785645.92    1AC106795, AC106795, AC114936
S/G/Y/R/B/O NT_023132AC0222171804087203RH599045634.99  5538.101AC027309, AC022217, AC027309
S/G/Y/R/B/O NT_023132AC0222171804088803RH597165633.18  5533.601AC027309, AC022217, AC027309
S/G/Y/R/B/O NT_023132AC0222171804089443RH599275635.09  5536.501AC027309, AC027309
S/G/Y/R/B/O NT_023132AC0222171804881393RH604075638.84  5535.001 AC008654, AC022217
S/G/Y/R/B/O NT_023132AC1100111805917182          
S/G/Y/R/B/O NT_023132AC0084291806527161RH695635636.91    1AC021159, AC110011, AC008429, AC021159, AC110011
S/G/Y/R/B/O NT_023132AC0084291806717001RH173095638.84    1AC021159, AC110011, AC021159, AC110011
S/G/Y/R/B/O NT_023132AC0084291807162051RH652625583.86    3AC021159, AC064850, AC091982, AC109999, AC110011, AC112489, AC008429, AC011417, AC021159, AC064850, AC091982, AC109999, AC110011, AC112489
S/G/Y/R/B/O NT_023132AC0084291810234741RH410845638.84    1 AC008429
S/G/Y/R/B/O NT_023132AC0084291810240931RH476385636.91    1AC008378, AC008378, AC008429, AC010257
S/G/Y/R/B/O NT_023132AC0211591807282151          
S/G/Y/R/B/O NT_023132AC0114071807304633          
S/G/Y/R/B/O NT_023132AC0900641809221651WI-2998    5533.701AC011407, AC011407, AC090064
S/G/Y/R/B/O NT_023132AC0900641809566801RH1037015634.89    1AC011407, AC011407, AC090064
S/G/Y/R/B/O NT_023132AC0900641809922011RH650875633.18    2AC008671, AC008671, AC090064
S/G/Y/R/B/O NT_023132AC0083781810712973RH599765638.84  5536.501 AC008378, AC010603
S/G/Y/R/B/O NT_023132AC0083781811241563RH361145636.91    1AL669821, AC008378, AC008412, AL669821


  NT_023132 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023132AC0083781811261423RH597705640.87  5535.201AL669821, AC008378, AC008412, AL669821
S/G/Y/R/B/O NT_023132AC0083781811264073RH458225640.77    1AL669821, AC008378, AC008412, AL669821
S/G/Y/R/B/O NT_023132AC0083781811279213RH918315636.91    1AL669821, AC008378, AC008412, AC010257, AL669821
S/G/Y/R/B/O NT_023132AC0083781811527643RH42781  56185.00  1AL669821, AC008378, AC008412, AC010257, AL669821
S/G/Y/R/B/O NT_023132AL6698211811617601          
S/G/Y/R/B/O NT_023132AL6699241812211622RH808285643.21    1AL669821, AC008412, AL669821, AL669924
S/G/Y/R/B/O NT_023132AC0087131813035052RH941645640.77    1AC106731, AL669924, AC008713, AC106731, AL669924
S/G/Y/R/B/O NT_023132AC0087131813041702RH699465638.84    1AC106731, AL669924, AC008713, AC106731, AL669924
S/G/Y/R/B/O NT_023132AC0087131813059272RH991265636.91    1AC106731, AC008713, AC106731
S/G/Y/R/B/O NT_023132AC1067311813313782          
S/G/Y/R/B/O NT_023132AC0165731813333833          
S/G/Y/R/B/O NT_023132AC0086321814338913          
S/G/Y/R/B/O NT_023132AC0086631815930613RH597965636.91  5537.201AC010339, AC008663, AC010339, AC022259
S/G/Y/R/B/O NT_023132AC0086631815962793RH598405640.87  5536.501AC010339, AC008663, AC010339, AC022259
S/G/Y/R/B/O NT_023132AC0086631815963643RH249975640.77    1AC010339, AC008663, AC010339, AC022259
S/G/Y/R/B/O NT_023132AC0103391816131433          
S/G/Y/R/B/O NT_023132AC0086741817080713RH426085636.91    1 AC008674
S/G/Y/R/B/O NT_023132AC0086741817080713RH948  56192.00  1 AC008674
S/G/Y/R/B/O NT_023132AC0086741817465253RH654215640.77    1AC010452, AC008674, AC010452, AC017043
S/G/Y/R/B/O NT_023132AC0086741817501563RH481825640.77    1AC010452, AC008674, AC010452, AC017043
S/G/Y/R/B/O NT_023132AC0104521818803201RH601625638.84  5535.001AC093275, AC010452, AC017043, AC027609, AC093275
S/G/Y/R/B/O NT_023132AC0932751819004942RH456405638.84    1 AC017043, AC027609, AC093275
S/G/Y/R/B/O NT_023132AC0932751819234532RH410985636.91    1AC023404, AC023404, AC027609, AC093275
S/G/Y/R/B/O NT_023132AC0932751819449522RH754265636.81    1AC023404, AC023404, AC027609, AC093275
S/G/Y/R/B/O NT_023132AC0932751819454272RH932205640.77    1AC023404, AC023404, AC027609, AC093275
S/G/Y/R/B/O NT_023132AC0234041819532401          
S/G/Y/R/B/O NT_023132AC1134231819533853          
S/G/Y/R/B/O NT_023132AC0087141820771392          
S/G/Y/R/B/O NT_023132AC0933101820969921RH285115662.21    1AC008714, AC008714, AC093222, AC093310
S/G/Y/R/B/O NT_023132AC0933101820975111RH105345636.91    1AC008714, AC008714, AC093222, AC093310
S/G/Y/R/B/O NT_023132AC0933101820975961RH600145638.84  5535.001AC008714, AC008714, AC093222, AC093310
S/G/Y/R/B/O NT_023132AC1067951821955131RH109895654.96    2AC008454, AC106825, AC008454, AC106795, AC106825
S/G/Y/R/B/O NT_023132AC1067951821956071RH786545645.50    2AC008454, AC106825, AC008454, AC106795, AC106825
S/G/Y/R/B/O NT_023132AC1164271822777483RH602435645.92  5541.601 AC116427
S/G/Y/R/B/O NT_023132AC1164271822777883RH674325661.42    2AC010239, AC026400, AC116354, AC010239, AC026400, AC116354, AC116427
S/G/Y/R/B/O NT_023132AC0084691823846023RH1040365638.94    1 AC008469, AC114280
S/G/Y/R/B/O NT_023132AC1085091824130943RH1028055642.80    2AC008469, AC026400, AC008469, AC026400, AC108509, AC114280
S/G/Y/R/B/O NT_023132AC0084541824883113RH485755645.50    1AC108509, AC008454, AC108509, AC114931
S/G/Y/R/B/O NT_023132AC0084541825798113RH109895654.96    2AC106795, AC106825, AC008454, AC106795, AC106825
S/G/Y/R/B/O NT_023132AC0084541825799033RH786545645.50    2AC106795, AC106825, AC008454, AC106795, AC106825
S/G/Y/R/B/O NT_023132AC1068251826200803          
S/G/Y/R/B/O NT_023132AC0102411826557773RH602575642.90  5538.301AC106825, AC010241, AC106825, AF318943
S/G/Y/R/B/O NT_023132AC0102411826569753RH598655642.77  5536.601AC106825, AC010241, AC106825, AF318943
S/G/Y/R/B/O NT_023132AC0102411826570273RH99475636.91    1AC106825, AC010241, AC106825, AF318943
S/G/Y/R/B/O NT_023132AC0102411826595703RH600835642.77  5538.201AC106825, AC010241, AC106825
S/G/Y/R/B/O NT_023132AC0102411826595703RH180415636.91    1AC106825, AC010241, AC106825
S/G/Y/R/B/O NT_023132AC0187601827405663          
S/G/Y/R/B/O NT_023132AC0102191828291183RH159085636.91    1AC018760, AC010219, AC018760
S/G/Y/R/B/O NT_023132AC0102191828555493RH713885636.91    1 AB023486, AC010219, D49783
S/G/Y/R/B/O NT_023132AC0267151830154281RH48809540.04    2AC010491, AC026749, AC010491, AC010627, AC026715, AC026749, AC026793, AC093211


  NT_023132 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023132AC0267151830244171RH59753539.72  541.501AC010491, AC010491, AC010627, AC026715, AC093211, AC108090
S/G/Y/R/B/O NT_023132AC0342001830351283          
S/G/Y/R/B/O NT_023132AC0913931830930953RH1025365642.90    2AC034200, AC025713, AC034200, AC091393, AC091957
S/G/Y/R/B/O NT_023132AC0913931830939903RH688765636.81    1AC026715, AC034200, AC026715, AC034200, AC091393, AC091957
S/G/Y/R/B/O NT_023132AC0913931830955103RH597205642.90  5538.601AC026715, AC034200, AC025713, AC026715, AC034200, AC091393, AC091957
S/G/Y/R/B/O NT_023132AC0913931830986033RH601195643.00    1AC026715, AC034200, AC025713, AC026715, AC034200, AC091393
S/G/Y/R/B/O NT_023132AC0913931830986033WI-16996    5539.901AC026715, AC034200, AC025713, AC026715, AC034200, AC091393
S/G/Y/R/B/O NT_023132AC0913931831811203RH181175636.91    1AC020903, AC008399, AC020903, AC025713, AC091393, X55760
S/G/Y/R/B/O NT_023132AC0913931831821453RH601375642.90  5539.801AC020903, AC008399, AC020903, AC025713, AC091393, X55760
S/G/Y/R/B/O NT_023132AC0913931831821963RH162555642.90    1AC020903, AC008399, AC020903, AC025713, AC091393, X55760
S/G/Y/R/B/O NT_023132AC0913931832633983WI-5924    5540.901 AC008399, AC025713, AC091393
S/G/Y/R/B/O NT_023132AC0113331833481922WI-4085    5535.001 AC011333
S/G/Y/R/B/O NT_023132AC0257521834573461          
S/G/Y/R/B/O NT_023132AC0919631834702172          
S/G/Y/R/B/O NT_023132AC0083811835679453D5S498    5535.001AC025752, AC091963, AC108104, AC008381, AC010257, AC025752, AC091963, AC108104
S/G/Y/R/B/O NT_023132AC0083811835679453RH135485640.7756207.00  1AC025752, AC091963, AC108104, AC008381, AC010257, AC025752, AC091963, AC108104
S/G/Y/R/B/O NT_023132AC1081041836001951          
S/G/Y/R/B/O NT_023132AC0265521836309271          
S/G/Y/R/B/O NT_023132AC0244721836382051          
S/G/Y/R/B/O NT_023132AC1081121837015861RH922755638.84    1AC024472, AC026552, AC010257, AC024472, AC026552, AC108112
S/G/Y/R/B/O NT_023132AC1081121837110091RH602785638.84  5535.001AC024472, AC026552, AC024472, AC026552, AC108112
S/G/Y/R/B/O NT_023132AC1081121837112371RH264775636.91    1AC024472, AC026552, AC024472, AC026552, AC108112
S/G/Y/R/B/O NT_023132AC1081121837988071RH764275638.84    1AC024472, AC024472, AC108112
S/G/Y/R/B/O NT_023132AC1133461838492401          
S/G/Y/R/B/O NT_023132AC0102201840283163          
S/G/Y/R/B/O NT_023132AC0084131840577553          
S/G/Y/R/B/O NT_023132AC0273161841866223          
S/G/Y/R/B/O NT_023132AC0273101842294422          
S/G/Y/R/B/O NT_023132AC0086991842889623WI-6460    5538.201AC027310, AC008699, AC027310
S/G/Y/R/B/O NT_023132AC0086991843861443WI-7451    5538.301AC090065, AC008699, AC090065
S/G/Y/R/B/O NT_023132AC0209031844555841          
S/G/Y/R/B/O NT_023132AC0900651844564011          
S/G/Y/R/B/O NT_023132 - RH100475636.91    1AC090063, AC110005, AC112170, AC090063, AC110005, AC112170
S/G/Y/R/B/O NT_023132 - RH7879  56188.00  1AC091934, AC113391, AC091934, AC113391
S/G/Y/R/B/O NT_023132 - SGC30125    5539.800AC010297, AC010297
S/G/Y/R/B/O NT_023132 - RH168855636.91    0AC010297, AC010297
S/G/Y/R/B/O NT_023132 - SGC32222    5539.800AC010297, AC010297
S/G/Y/R/B/O NT_023132 - RH176185636.91    1AC090063, AC112170, AC090063, AC112170
S/G/Y/R/B/O NT_023132 - SGC31999    5539.800AC010297, AC010297
S/G/Y/R/B/O NT_023132 - RH183845636.91    0AC110005, AC110005
S/G/Y/R/B/O NT_023132 - RH412305636.91    1AC110005, AC112170, AC110005, AC112170
S/G/Y/R/B/O NT_023132 - RH412545640.77    0  
S/G/Y/R/B/O NT_023132 - RH478375636.91    1AC027314, AC026513, AC027314
S/G/Y/R/B/O NT_023132 - RH597625636.91    1AC110005, AC110005
S/G/Y/R/B/O NT_023132 - RH601035636.91    1AC110005, AC110005
S/G/Y/R/B/O NT_023132 - RH603015636.91    1AC027314, AC027317, AC027314, AC027317
S/G/Y/R/B/O NT_023132 - RH604195636.91    1AC008570, AC110005, AC008570, AC110005
S/G/Y/R/B/O NT_023132 - RH678495637.01    1AC090063, AC112170, AC090063, AC112170, M17466
S/G/Y/R/B/O NT_023132 - RH685595637.01    1AC010316, AC091942, AC010316, AC091942
S/G/Y/R/B/O NT_023132 - RH686195636.91    1AC008570, AC110005, AC008570, AC110005


  NT_023132 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023132 - RH702955636.91    1AC090063, AC112170, AC090063, AC112170, M17466
S/G/Y/R/B/O NT_023132 - RH705225636.91    1AC023788, AC090063, AC008542, AC023788, AC090063
S/G/Y/R/B/O NT_023132 - RH765045637.01    1AC012283, AC027318, AC034209, AC091897, AC012283, AC027318, AC034209, AC091897, AC091902
S/G/Y/R/B/O NT_023132 - RH786775642.80    0  
S/G/Y/R/B/O NT_023132 - RH799305640.67    0