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  Chromosome 5 - RH Maps - Single Contig
 

Chromosome 5 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_006907
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006907AC1133721752483671          
S/G/Y/R/B/O NT_006907AC0113841753019783RH422035626.67    1AC113372, AC011384, AC113372
S/G/Y/R/B/O NT_006907AC0113841753019783RH746  56000.00  1AC113372, AC011384, AC113372
S/G/Y/R/B/O NT_006907AC0086341754162253RH62895624.94    1 AC008634
S/G/Y/R/B/O NT_006907AC0086341754162253D5S496    5526.101 AC008634
S/G/Y/R/B/O NT_006907AC0086341754162253RH944  55989.00  1 AC008634
S/G/Y/R/B/O NT_006907AC0087081754787942          
S/G/Y/R/B/O NT_006907AC0212881755300641          
S/G/Y/R/B/O NT_006907AC0933041756001022RH601315626.72  5527.701 AC009188, AC093304
S/G/Y/R/B/O NT_006907AC0933041756015052RH254645626.72    1 AC093304
S/G/Y/R/B/O NT_006907AC0933041756818862WI-4324    5529.201AC008464, AC008464, AC093291, AC093304
S/G/Y/R/B/O NT_006907AC0084641757243992WI-3815    5529.201AC093304, AC008464, AC093304
S/G/Y/R/B/O NT_006907AC0087051757642053          
S/G/Y/R/B/O NT_006907AC0113691759239143          
S/G/Y/R/B/O NT_006907AC0086371760781071RH792355631.64    1AC025764, AC008637, AC025764
S/G/Y/R/B/O NT_006907AC0086371760785971RH597245626.72  5529.201AC025764, AC008637, AC025764
S/G/Y/R/B/O NT_006907AC0257641760467352WI-4636    5529.201AC008637, AC008637, AC025764
S/G/Y/R/B/O NT_006907AC0266891760966001RH779085626.62    1AC008637, AC025764, AC008637, AC025764, AC026689
S/G/Y/R/B/O NT_006907AC0266891761138261RH110355626.72    1AC008637, AC025764, AC008637, AC025764, AC026689
S/G/Y/R/B/O NT_006907AC0266891761818481RH483075626.72    1AC008637, AC008637, AC026689
S/G/Y/R/B/O NT_006907AC0266891762918691RH601265626.72  5529.201 AC026689
S/G/Y/R/B/O NT_006907AC0266891762943461RH271685632.06    1 AC026689
S/G/Y/R/B/O NT_006907AC0266891762954951RH103675631.64    1AC020894, AC020894, AC026689
S/G/Y/R/B/O NT_006907AC0208941763599982RH124105626.67    1AC008477, AC009187, AC008477, AC009187, AC020894
S/G/Y/R/B/O NT_006907AC0208941763698722RH109995631.64    1AC008477, AC009187, AC008477, AC009187, AC020894
S/G/Y/R/B/O NT_006907AC0208941763997202RH935275626.62    1AC009187, AC021468, AC009187, AC020894, AC021468
S/G/Y/R/B/O NT_006907AC0208941764026062RH691425631.64    1AC008477, AC009187, AC021468, AC008477, AC009187, AC020894, AC021468
S/G/Y/R/B/O NT_006907AC0208941764050392RH683565626.62    1AC008477, AC009187, AC021468, AC008477, AC009187, AC020894, AC021468
S/G/Y/R/B/O NT_006907AC0208941764066852RH602885626.72  5529.201AC008477, AC009187, AC021468, AC008477, AC009187, AC020894, AC021468
S/G/Y/R/B/O NT_006907AC0091871763201632RH601945626.72  5529.201AC008477, AC020894, AC008477, AC009187, AC020894
S/G/Y/R/B/O NT_006907AC0091871763202882RH126815626.62    1AC008477, AC020894, AC008477, AC009187, AC020894
S/G/Y/R/B/O NT_006907AC0091871763209102RH987465631.64    1AC008477, AC020894, AC008477, AC009187, AC020894
S/G/Y/R/B/O NT_006907AC0091871763228282RH600355626.62  5530.201AC008477, AC020894, AC008477, AC009187, AC020894
S/G/Y/R/B/O NT_006907AC0091871763441252RH604235626.62  5530.201AC008477, AC020894, AC008477, AC009187, AC020894
S/G/Y/R/B/O NT_006907AC0091871763454082RH659825626.62    1AC008477, AC020894, AC008477, AC009187, AC020894
S/G/Y/R/B/O NT_006907AC0084771763805421          
S/G/Y/R/B/O NT_006907AC0214681764240471          
S/G/Y/R/B/O NT_006907AC0085901765131303RH601465626.72  5529.201AC011365, AC021468, AC008590, AC011365, AC021468
S/G/Y/R/B/O NT_006907AC0085901765174633RH599365626.67  5529.201AC011365, AC021468, AC008590, AC011365, AC021468
S/G/Y/R/B/O NT_006907AC0085901765181533RH412095631.64    1AC011365, AC021468, AC008590, AC011365, AC021468
S/G/Y/R/B/O NT_006907AC0113651765533082          
S/G/Y/R/B/O NT_006907AC0273111766162583          
S/G/Y/R/B/O NT_006907AC0940811768024563RH599015628.60  5530.701AC011389, AC011389, AC094081
S/G/Y/R/B/O NT_006907AC0940811768116613RH1025635631.75    1AC011389, AC011389, AC094081
S/G/Y/R/B/O NT_006907AC0113891768429172RH923235626.72    1 AC011389
S/G/Y/R/B/O NT_006907AC0113891768662482RH1125  56076.00  1 AC011389
S/G/Y/R/B/O NT_006907AC0113891768881252RH927605626.62    1 AC011389
S/G/Y/R/B/O NT_006907AC0113891769026122RH601335626.67  5529.201AC046182, AC011389, AC022451, AC046182
S/G/Y/R/B/O NT_006907AC0113891769531392WI-11149    5530.201AC046182, AC011389, AC046182
S/G/Y/R/B/O NT_006907AC0461821769456751          


  NT_006907 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006907AC0084091770007061AFMA109XA5    5529.201AC046182, AC046182
S/G/Y/R/B/O NT_006907AC1121651771010791RH602095626.67    1AC008479, AC008479, AC112165
S/G/Y/R/B/O NT_006907AC1121651771010791TIGR-A003N35    5540.301AC008479, AC008479, AC112165
S/G/Y/R/B/O NT_006907AC0084791771271112RH761015626.62    1AC112165, AC008479, AC112165
S/G/Y/R/B/O NT_006907AC0086651773620113RH1027595631.02    1 AC008665, AC010218
S/G/Y/R/B/O NT_006907AC0086801774248753RH480145631.02    1 AC008680
S/G/Y/R/B/O NT_006907AC0086801774264663RH786135631.02    1 AC008680
S/G/Y/R/B/O NT_006907AC0086801774274633CHLC.GATA11A11    5531.401 AC008680
S/G/Y/R/B/O NT_006907AC0103031776022163RH135775628.4056098.00  1 AC022927
S/G/Y/R/B/O NT_006907AC0103031776239663WI-3320    5530.901 AC010303
S/G/Y/R/B/O NT_006907AC0084491776839093RH601745631.02  5531.401 AC008449, AC022927
S/G/Y/R/B/O NT_006907AC0084491776977043RH459195628.40    1 AC008449, AC022927
S/G/Y/R/B/O NT_006907AC0086481777509133          
S/G/Y/R/B/O NT_006907AC0266951779047633RH254215631.64    1 AC026695
S/G/Y/R/B/O NT_006907AC0266951779050803RH602355631.59  5532.701 AC026695
S/G/Y/R/B/O NT_006907AC0086601780024153D5S397    5532.701 AC008660
S/G/Y/R/B/O NT_006907AC0086601780024153RH34897  56105.00  1 AC008660
S/G/Y/R/B/O NT_006907AC0086601780138673RH1027255631.59    1 AC008660
S/G/Y/R/B/O NT_006907AC0341991780705143RH597805631.59  5532.701 AC034199
S/G/Y/R/B/O NT_006907AC0341991780727113RH912925631.59    1 AC034199
S/G/Y/R/B/O NT_006907AC0341991780734263RH810675631.13    1 AC034199
S/G/Y/R/B/O NT_006907AC0341991780741983RH706355633.18    1 AC034199
S/G/Y/R/B/O NT_006907AC0341991780924713RH412185632.67    1 AC027741, AC034199
S/G/Y/R/B/O NT_006907AC0341991780954353RH703675632.78    1 AC027741, AC034199
S/G/Y/R/B/O NT_006907AC0273061782003523RH916195630.72    1 AC027306, AC027741
S/G/Y/R/B/O NT_006907AC0086191783004043          
S/G/Y/R/B/O NT_006907AC1134321783884251          
S/G/Y/R/B/O NT_006907AC0273121784107133          
S/G/Y/R/B/O NT_006907AC0087191785367493          
S/G/Y/R/B/O NT_006907AC0085141786113253RH602275632.37    1 AC008514
S/G/Y/R/B/O NT_006907AC0085141786113253SGC34169    5536.501 AC008514
S/G/Y/R/B/O NT_006907AC0085141786113893RH411995632.67    1 AC008514
S/G/Y/R/B/O NT_006907AC0085141786335943RH487675631.59    1 AC008514
S/G/Y/R/B/O NT_006907AC0085141786349553RH653685631.59    1 AC008514
S/G/Y/R/B/O NT_006907AC0187531788050993RH602625632.26    1AC021077, AC018753, AC021077
S/G/Y/R/B/O NT_006907AC0187531788050993WI-11325    5535.901AC021077, AC018753, AC021077
S/G/Y/R/B/O NT_006907AC0210771788064392          
S/G/Y/R/B/O NT_006907AC0165741788962053D5S653    5535.801AC021077, AC021077
S/G/Y/R/B/O NT_006907AC0165741788963893RH947  56136.00  1AC021077, AC016574, AC021077
S/G/Y/R/B/O NT_006907AC0165741789664223RH676885632.67    1 AC016574
S/G/Y/R/B/O NT_006907AC0165741789664623RH359155634.89    1 AC016574
S/G/Y/R/B/O NT_006907 - RH1044605630.00    0  
S/G/Y/R/B/O NT_006907 - RH411705631.59    0AC027306, AC027306, AC027741
S/G/Y/R/B/O NT_006907 - RH419505633.18    1AC091874, AC091874
S/G/Y/R/B/O NT_006907 - RH465315626.72    0AC026689, AC026689
S/G/Y/R/B/O NT_006907 - RH919905626.72    0  
S/G/Y/R/B/O NT_006907 - RH981605633.18    0