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  Chromosome 5 - RH Maps - Single Contig
 

Chromosome 5 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_023195
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023195AC112204377770371RH62715126.29  5139.402AC116333, AC112204, AC112486, AC116333
S/G/Y/R/B/O NT_023195AC112204377771201RH38637  51354.00  2 AC112204, AC112486
S/G/Y/R/B/O NT_023195AC116333377047521          
S/G/Y/R/B/O NT_023195AC008860378591173RH412215124.27    1AC112204, AC008860, AC008947, AC112204
S/G/Y/R/B/O NT_023195AC008860378591303RH809685123.97    1AC112204, AC008860, AC008947, AC112204
S/G/Y/R/B/O NT_023195AC008860379453333RH1023175127.13    2AC016612, AC016612, AC022136, AC008860, AC008947, AC016612, AC016612, AC022136, AC025444
S/G/Y/R/B/O NT_023195AC016612379739923D5S455    5135.801AC022136, AC016612, AC022136, AC025444
S/G/Y/R/B/O NT_023195AC016612379739923RH33509  51391.00  1AC022136, AC016612, AC022136, AC025444
S/G/Y/R/B/O NT_023195AC016612380148483RH990815128.77    1AC022136, AC008947, AC016612, AC022136, AC025444, AC025444, AC025476
S/G/Y/R/B/O NT_023195AC016612380288403RH1023175127.13    2AC008860, AC022136, AC008860, AC008947, AC016612, AC016612, AC022136, AC025444
S/G/Y/R/B/O NT_023195AC008942380783313WI-12996    5134.001 AC008942, AC025476, AC026735
S/G/Y/R/B/O NT_023195AC008942380783313RH601345123.97    1 AC008942, AC025476, AC026735
S/G/Y/R/B/O NT_023195AC008942381726593RH597895126.92  5134.201AC008807, AC008807, AC008942
S/G/Y/R/B/O NT_023195AC008942381741293RH458215128.25    1AC008807, AC008807, AC008942
S/G/Y/R/B/O NT_023195AC008942381743163WI-12390    5126.901AC008807, AC008807, AC008942
S/G/Y/R/B/O NT_023195AC008942381746183RH598455124.27  5134.101AC008807, AC008807, AC008942
S/G/Y/R/B/O NT_023195AC008942381746453RH412295124.17    1AC008807, AC008807, AC008942
S/G/Y/R/B/O NT_023195AC008807382632283AFM303TH5    5134.101AC026439, AC026439
S/G/Y/R/B/O NT_023195AC026439382759703WI-5193    5132.301AC114277, AC026439, AC114277
S/G/Y/R/B/O NT_023195AC114277383248313          
S/G/Y/R/B/O NT_023195AC114950383994243RH30905  51384.00  1AC026724, AC026724, AC092281, AC114950
S/G/Y/R/B/O NT_023195AC026724384128061AFMB296XF1    5130.301 AC026724, AC092281
S/G/Y/R/B/O NT_023195AC010631385607773RH810705123.78    1 AC010631, AC090074
S/G/Y/R/B/O NT_023195AC010631385608433RH442065127.13    1 AC010631, AC090074
S/G/Y/R/B/O NT_023195AC010631386145373RH698875126.81    1AC008957, AC008957, AC010631
S/G/Y/R/B/O NT_023195AC010631386146123RH598765128.25  5139.201 AC010631
S/G/Y/R/B/O NT_023195AC008957386660513RH807515127.21    1 AC008957, AC010386
S/G/Y/R/B/O NT_023195AC008957386676013RH682325124.17    1 AC008957, AC010386
S/G/Y/R/B/O NT_023195AC008957386677183RH601595124.27  5134.101 AC008957, AC010386
S/G/Y/R/B/O NT_023195AC008957386678283RH663885124.37    1 AC008957, AC010386
S/G/Y/R/B/O NT_023195AC026463386925553          
S/G/Y/R/B/O NT_023195AC026741388465733SGC34251    5138.301 AC010380, AC018853, AC025454, AC026741
S/G/Y/R/B/O NT_023195AC026741388465733RH600605122.75    1 AC010380, AC018853, AC025454, AC026741
S/G/Y/R/B/O NT_023195AC026741388511193WI-16007    5132.101 AC010380, AC018853, AC025454, AC026741
S/G/Y/R/B/O NT_023195AC026741388511193RH598595122.75    1 AC010380, AC018853, AC025454, AC026741
S/G/Y/R/B/O NT_023195AC026741388773683RH597645124.47  5132.301 AC010380, AC018853, AC025454, AC026741
S/G/Y/R/B/O NT_023195AC026741389424473SGC44479    5143.701 AC018853, AC019267, AC025454, AC026741
S/G/Y/R/B/O NT_023195AC008902389731623RH658825128.67    1 AC008902, AC018853, AC019267
S/G/Y/R/B/O NT_023195AC008902390452003RH475825128.67    1AC008925, AC008902, AC008925, AC019267
S/G/Y/R/B/O NT_023195AC008925390870713RH118885130.26    1 AC008925, AC019267
S/G/Y/R/B/O NT_023195AC008925391374383RH767125128.88    1AC025449, AC008925, AC025449
S/G/Y/R/B/O NT_023195AC008925391374553RH363525130.26    1AC025449, AC008925, AC025449
S/G/Y/R/B/O NT_023195AC025449392661923RH601935128.25  5128.801AF165926, AC008832, AC025449, AF165926
S/G/Y/R/B/O NT_023195AF165926393859103RH411845128.25    1AC053526, AC053526, AF165926
S/G/Y/R/B/O NT_023195AC053526394191241          
S/G/Y/R/B/O NT_023195AC068049394920001RH285975130.26    1AC025469, AC025469, AC068049
S/G/Y/R/B/O NT_023195AC025469395060822          
S/G/Y/R/B/O NT_023195AC093269395848491          
S/G/Y/R/B/O NT_023195AC093261396083921          
S/G/Y/R/B/O NT_023195AC008869397722233RH700365127.65    1AC093261, AC093269, AC008869, AC093261, AC093269, AC107994, AC108087


  NT_023195 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023195AC008869397769463RH155755129.35    1AC093261, AC008869, AC093261, AC108087
S/G/Y/R/B/O NT_023195AC008869398188203RH30907  51487.00  1 AC008869, AC108087
S/G/Y/R/B/O NT_023195AC034226399081623          
S/G/Y/R/B/O NT_023195AC074129400429773          
S/G/Y/R/B/O NT_023195AC091430400450423          
S/G/Y/R/B/O NT_023195AC010338401353373AFMA223WF9    5126.801AC010351, AC010338, AC010351
S/G/Y/R/B/O NT_023195AC010338401425503WI-5083    5125.901AC010351, AC010338, AC010351
S/G/Y/R/B/O NT_023195AC010351402302983          
S/G/Y/R/B/O NT_023195AC091839404012633AFMA274WC9    5124.301AC010457, AC010457
S/G/Y/R/B/O NT_023195AC010457404237373RH942815130.26    1 AC010457, AC090076
S/G/Y/R/B/O NT_023195AC010457404244183RH599465129.94  5125.901 AC010457, AC090076
S/G/Y/R/B/O NT_023195AC010457404347933RH598075130.26  5125.901 AC010457, AC090076
S/G/Y/R/B/O NT_023195AC010457404363733RH917535130.26    1 AC010457
S/G/Y/R/B/O NT_023195AC010457404377853RH488155130.26    1 AC010457
S/G/Y/R/B/O NT_023195AC010457404395463RH411955156.50    1 AC010457, AC090076
S/G/Y/R/B/O NT_023195AC010457404412103RH935325158.81    1AC091823, AC010457, AC090076, AC091823
S/G/Y/R/B/O NT_023195AC091823404712033RH8811  51504.00  1 AC016324, AC090076, AC091823
S/G/Y/R/B/O NT_023195AC091823404966863RH42834  51497.00  1 AC016324, AC091823
S/G/Y/R/B/O NT_023195AC010425405959363CHLC.GATA2A03    5124.301 AC010425, AC016324
S/G/Y/R/B/O NT_023195AC091435406634323          
S/G/Y/R/B/O NT_023195AC026713408950813RH8051  113181.00  1AC016719, AC109467, AC010938, AC016719, AC109467
S/G/Y/R/B/O NT_023195AC016719409010191          
S/G/Y/R/B/O NT_023195AC109467409362762          
S/G/Y/R/B/O NT_023195AC008964409393833          
S/G/Y/R/B/O NT_023195AC010633410974023RH601285129.62  5127.201 AC010633
S/G/Y/R/B/O NT_023195AC010633410974643RH445645130.48    1 AC010633
S/G/Y/R/B/O NT_023195AC010633411618743RH767195153.70    1AC025471, AC007914, AC010633, AC015575, AC025471
S/G/Y/R/B/O NT_023195AC025471412444303RH411085148.87    2AC022135, AC008968, AC015575, AC022135, AC025471
S/G/Y/R/B/O NT_023195AC025471412444973RH2027  51554.00  2AC022135, AC007914, AC008968, AC015575, AC022135, AC025471
S/G/Y/R/B/O NT_023195AC025471412454133RH603245133.52  5126.702AC022135, AC007914, AC008968, AC015575, AC022135, AC025471
S/G/Y/R/B/O NT_023195AC025471412454443RH116475132.07    2AC022135, AC007914, AC008968, AC015575, AC022135, AC025471
S/G/Y/R/B/O NT_023195AC008846413249173RH598415131.02  5125.001 AC007914, AC008846, AC015575, AC069179
S/G/Y/R/B/O NT_023195AC008846413323053RH677695140.26    1 AF205890
S/G/Y/R/B/O NT_023195AC008846413370373RH600125132.07  5127.701 AC007914, AC008846, AC015575, AC069179, AF205890
S/G/Y/R/B/O NT_023195AC008846413449553RH599255132.81  5126.201AC008916, AC008846, AC008916, AC069179, AF205890
S/G/Y/R/B/O NT_023195AC008846413458583RH451865133.65    1AC008916, AC007914, AC008846, AC008916, AC015575, AC069179, AF205890
S/G/Y/R/B/O NT_023195AC008846413539333SGC34152    5144.401AC008916, AC008916
S/G/Y/R/B/O NT_023195AC008916414205473RH687875149.93    1AC008959, AC008916, AC008959, AC069179
S/G/Y/R/B/O NT_023195AC008959414756733          
S/G/Y/R/B/O NT_023195AC026708414986853          
S/G/Y/R/B/O NT_023195AC091886416044863          
S/G/Y/R/B/O NT_023195AC027475416480821          
S/G/Y/R/B/O NT_023195AC093217416495081          
S/G/Y/R/B/O NT_023195AC026209416602101          
S/G/Y/R/B/O NT_023195AC027504417141661          
S/G/Y/R/B/O NT_023195AC108105417212841          
S/G/Y/R/B/O NT_023195AC116363417309701          
S/G/Y/R/B/O NT_023195AC114320417399113          
S/G/Y/R/B/O NT_023195AC008820417846903D5S501    5127.301 AC008820
S/G/Y/R/B/O NT_023195AC026714418568753RH155765136.26    1 AC025247, AC026714


  NT_023195 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023195AC092288419819262          
S/G/Y/R/B/O NT_023195AC109494419995162          
S/G/Y/R/B/O NT_023195AC010165421571893CHLC.GATA4D04    5126.801 AC022241
S/G/Y/R/B/O NT_023195AC008842421849843          
S/G/Y/R/B/O NT_023195AC110001421976563          
S/G/Y/R/B/O NT_023195AC016369422323501          
S/G/Y/R/B/O NT_023195AC093277423415491          
S/G/Y/R/B/O NT_023195AC114977423865431          
S/G/Y/R/B/O NT_023195AC093264426204353RH411575147.72    1 AC093264, X97873
S/G/Y/R/B/O NT_023195AC093264426311133RH411125139.95    1AC008810, AC008810, AC093264
S/G/Y/R/B/O NT_023195AC093264426325013RH411865147.62    1AC008810, AC008810, AC093264
S/G/Y/R/B/O NT_023195AC093264426507213RH750665155.46    1AC008810, AC008810, AC093264
S/G/Y/R/B/O NT_023195AC093264426508433RH411825147.62    1AC008810, AC008810, AC093264
S/G/Y/R/B/O NT_023195AC008810426984823RH598195136.46  5126.501 AC008810, AC025758
S/G/Y/R/B/O NT_023195AC008810426984983RH185165147.72    1 AC008810, AC025758
S/G/Y/R/B/O NT_023195AC008810427122223RH710415147.72    1 AC008810, AC025758
S/G/Y/R/B/O NT_023195AC008810427379743RH411385147.51    1 AC008810, AC025758
S/G/Y/R/B/O NT_023195AC008810427643823RH411365139.84    1AC008922, AC008810, AC008922, AC025758
S/G/Y/R/B/O NT_023195AC008810427646583RH936965143.04    1AC008922, AC008810, AC008922, AC025758
S/G/Y/R/B/O NT_023195AC008810427654593RH598095145.87  5144.101AC008922, AC008810, AC008922, AC025758
S/G/Y/R/B/O NT_023195AC008810427654743RH410765143.14    1 AC025758
S/G/Y/R/B/O NT_023195AC008810427668343RH412435139.84    1AC008922, AC008810, AC008922, AC025758
S/G/Y/R/B/O NT_023195AC008922427828533          
S/G/Y/R/B/O NT_023195AC026732428258643          
S/G/Y/R/B/O NT_023195AC114967428862021          
S/G/Y/R/B/O NT_023195AC067784429726451CHLC.GATA21D04    5126.501AC114967, AC018595, AC067784, AC114967
S/G/Y/R/B/O NT_023195AC008863430610803          
S/G/Y/R/B/O NT_023195AC091871431174441          
S/G/Y/R/B/O NT_023195AC016332431426401RH412555141.34    1AC091871, AC016332, AC091871
S/G/Y/R/B/O NT_023195AC008830432677413RH494965143.95    1AC016332, AC016332
S/G/Y/R/B/O NT_023195AC008830432677413RH30422  51617.00  1AC016332, AC016332
S/G/Y/R/B/O NT_023195AC008830432961503RH653935138.59    1AC016332, AC008830, AC016332, AC022141
S/G/Y/R/B/O NT_023195AC008830432973973RH159575143.85    1AC016332, AC008830, AC016332, AC022141
S/G/Y/R/B/O NT_023195AC008830433295273RH38641  51629.00  1AC016332, AC094082, AC008830, AC016332, AC022141, AC094082
S/G/Y/R/B/O NT_023195AC094082433408021          
S/G/Y/R/B/O NT_023195AC021600433687281WI-11188    5126.901AC008830, AC094082, AC008830, AC021600, AC022141, AC094082
S/G/Y/R/B/O NT_023195AC020940433984611          
S/G/Y/R/B/O NT_023195AC109453434050931          
S/G/Y/R/B/O NT_023195AC025649434315621          
S/G/Y/R/B/O NT_023195AC008817437516483RH601075148.87  5126.802AC114946, AC008817, AC025384, AC114946
S/G/Y/R/B/O NT_023195AC114946437678791          
S/G/Y/R/B/O NT_023195AC010408439598031RH411855135.96    1AC022972, AC034222, AC010408, AC022972, AC034222
S/G/Y/R/B/O NT_023195AC010408439667081RH172965150.89    1AC022972, AC034222, AC010408, AC022972, AC034222
S/G/Y/R/B/O NT_023195AC010408439678071RH14749  65344.00  1AC022972, AC034222, AC010408, AC022972, AC034222
S/G/Y/R/B/O NT_023195AC010408439799501RH462285151.62    1AC022972, AC034222, AC010408, AC022972, AC034222
S/G/Y/R/B/O NT_023195AC034222439104472RH603165138.28  5126.501 AC034222
S/G/Y/R/B/O NT_023195AC022972439882181          
S/G/Y/R/B/O NT_023195AC008912440479023RH30909  51652.00  1 AC008912
S/G/Y/R/B/O NT_023195AC108099441245793          
S/G/Y/R/B/O NT_023195AC104114442618293          


  NT_023195 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023195AC026655442794151          
S/G/Y/R/B/O NT_023195 - RH1020555128.77    2AC021128, AC025857, AC069185, AC090790, AC021128, AC025857, AC069185, AC090790, AF271897
S/G/Y/R/B/O NT_023195 - RH8050  51526.00  1AC026338, AC026786, AC073911, AL603926, AC026338, AC026786, AC073911, AL603926
S/G/Y/R/B/O NT_023195 - SGC32812    5126.201AC007606, AC023830, AC007606, AC013282, AC023830
S/G/Y/R/B/O NT_023195 - RH1029275135.15    1AC008773, AC022132, AC114947, AL079334, AC008773, AC022132, AC114947, AL079334
S/G/Y/R/B/O NT_023195 - RH159565127.31    0 AC008690, AC025269, AC055815, AC107616
S/G/Y/R/B/O NT_023195 - RH283155129.62    1AC025472, AC092282, AC011650, AC025472, AC092282
S/G/Y/R/B/O NT_023195 - RH411145138.08    1AC016660, AC107870, AC016660, AC107870, L46720
S/G/Y/R/B/O NT_023195 - RH440655130.26    0  
S/G/Y/R/B/O NT_023195 - RH454945128.25    1AC008899, AC026710, AC034232, AC092283, AC108119, AC109493, AC008899, AC024570, AC026710, AC034232, AC092283, AC108119, AC109493
S/G/Y/R/B/O NT_023195 - RH598605128.46    1AC008766, AC021128, AC074134, AC008766, AC021128, AC074134
S/G/Y/R/B/O NT_023195 - RH599055129.40  5128.001AC008869, AC093269, AC008869, AC093269, AC114972
S/G/Y/R/B/O NT_023195 - CHLC.GATA63C02    5130.302AC008826, AC016613, AC091841, AC008826, AC016613, AC091841
S/G/Y/R/B/O NT_023195 - SGC33361    5130.901AC008795, AC010368, AC008795, AC010368, AC011145, AC025447
S/G/Y/R/B/O NT_023195 - WI-21061    5131.600AC010631, AC010631
S/G/Y/R/B/O NT_023195 - RH601025127.55  5132.500  
S/G/Y/R/B/O NT_023195 - RH601125128.15    1AC008954, AC026707, AC008954, AC026707
S/G/Y/R/B/O NT_023195 - D5S1436    5134.101AC034179, AC116365, AC034179, AC116365
S/G/Y/R/B/O NT_023195 - RH601145129.40    1AC016602, AC025754, AC008950, AC016602, AC025754
S/G/Y/R/B/O NT_023195 - WI-11211    5134.201AC026801, AC008690, AC008855, AC011145, AC026801, AC055815, AC107616
S/G/Y/R/B/O NT_023195 - RH601975128.36    1AC034232, AC092283, AC108119, AC109493, AC024570, AC034232, AC092283, AC108119, AC109493
S/G/Y/R/B/O NT_023195 - RH603375129.19    1AC025441, AC034231, AC108119, AC012632, AC025441, AC034231, AC108119
S/G/Y/R/B/O NT_023195 - RH788495139.90    0  
S/G/Y/R/B/O NT_023195 - RH810885128.67    1AC008949, AC034240, AC008949, AC034240
S/G/Y/R/B/O NT_023195 - RH914575131.76    0