Chromosome X - RH Maps - Single Contig

Chromosome X - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_028427	NT_028413	NT_033330	NT_025302	NT_011735	NT_029505	NT_030875	NT_011649
NT_025291	NT_030874	NT_030885	NT_011812	NT_011832	NT_030887	NT_011775	NT_011772
NT_033338	NT_025352	NT_011724	NT_011586	NT_011754	NT_027220	NT_011694	NT_011662
NT_011530	NT_025960	NT_030890	NT_011535	NT_011536	NT_030191	NT_011753	NT_011766
NT_025940	NT_030873	NT_025323	NT_025318	NT_030889	NT_011752	NT_011757	NT_011657
NT_011793	NT_011692	NT_025348	NT_011568	NT_033332	NT_033319	NT_011611	NT_011638
NT_033329	NT_027215	NT_025961	NT_011836	NT_011799	NT_011618	NT_028400	NT_025297
NT_011630	NT_029503	NT_011669	NT_029502	NT_019696	NT_033336	NT_033321	NT_011594
NT_025273	NT_033334	NT_031924	NT_011544	NT_011597	NT_011689	NT_025320	NT_025329
NT_025376	NT_025312	NT_025306	NT_011687	NT_025949	NT_033327	NT_025330	NT_027217
NT_033328	NT_011651	NT_027218	NT_011765	NT_025280	NT_025319	NT_025299	NT_011819
NT_011783	NT_033326	NT_011565	NT_025265	NT_028405	NT_028406	NT_011588	NT_011667
NT_011613	NT_011786	NT_025267	NT_011834	NT_011719	NT_028403	NT_029504	NT_011574
NT_026503	NT_011681	NT_011851	NT_011537	NT_019686	NT_026504	NT_025309	NT_011602
NT_033323	NT_033335	NT_033325	NT_033322	NT_011598	NT_011726	NT_029507	NT_033333
NT_011637	NT_025345	NT_033324	NT_025965	NT_025307

NT_025319

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_025319	AL390836	105133849	3
S/G/Y/R/B/O	NT_025319	AL034403	105349195	3	RH33433			X	3788.00			1		AL034403, AL161914
S/G/Y/R/B/O	NT_025319	AL034403	105349346	3	RH16257	X	283.62					1		AL034403, AL161914
S/G/Y/R/B/O	NT_025319	AL031387	105545647	3	RH12108	X	292.97					1		AL031387, AL161914
S/G/Y/R/B/O	NT_025319	AL031387	105545687	3	RH63504	X	287.52			X	268.20	1		AL031387, AL161914
S/G/Y/R/B/O	NT_025319	AL118496	105581402	3	WI-9952					X	268.20	1		AL118496
S/G/Y/R/B/O	NT_025319	AL118496	105624890	3	RH63619	X	287.52			X	268.20	1		AL118496
S/G/Y/R/B/O	NT_025319	AL118496	105644206	3	RH44297	X	283.41					1		AB061711, AL118496
S/G/Y/R/B/O	NT_025319	AL118496	105644325	3	RH38748	X	283.62					1		AB061711, AL118496
S/G/Y/R/B/O	NT_025319	AL138968	105723895	3	RH11026	X	283.41					1		AL138968
S/G/Y/R/B/O	NT_025319	AL590647	105738855	3
S/G/Y/R/B/O	NT_025319	AC003013	105799300	3	CHLC.GATA81B07					X	268.20	1		AC003013
S/G/Y/R/B/O	NT_025319	AC003013	105939014	3	WI-4403					X	269.80	1		AC003013, AL136101
S/G/Y/R/B/O	NT_025319	AL590384	105968413	3
S/G/Y/R/B/O	NT_025319	AL360224	105976033	3
S/G/Y/R/B/O	NT_025319	AL359079	106178552	3	RH41913	X	292.97					1		AL359079
S/G/Y/R/B/O	NT_025319	AL359079	106178647	3	WI-14027					X	267.40	1		AL359079
S/G/Y/R/B/O	NT_025319	AL359079	106178647	3	RH63655	X	282.10					1		AL359079
S/G/Y/R/B/O	NT_025319	AL359079	106195454	3	RH35758	X	283.41					3	AC090439, AC090439,	AC090439, AC090439, AL359079
S/G/Y/R/B/O	NT_025319	AL359079	106197613	3	SGC34545					X	269.70	1		AL359079
S/G/Y/R/B/O	NT_025319	AL359079	106197613	3	RH63428	X	280.91					1		AL359079
S/G/Y/R/B/O	NT_025319	AL359079	106197723	3	RH77921	X	283.41					1		AL359079
S/G/Y/R/B/O	NT_025319	AL079334	106218462	3
S/G/Y/R/B/O	NT_025319	AL031319	106310363	3	RH63437	X	287.52			X	268.20	1		AL031319
S/G/Y/R/B/O	NT_025319	AL031319	106310436	3	RH67369	X	287.52					1		AL031319
S/G/Y/R/B/O	NT_025319	AL031319	106340307	3	RH46895	X	292.97					1		AL031319
S/G/Y/R/B/O	NT_025319	AL031319	106340329	3	RH80484	X	292.97					1		AL031319
S/G/Y/R/B/O	NT_025319	AL137844	106380693	3
S/G/Y/R/B/O	NT_025319	AC000113	106396545	3
S/G/Y/R/B/O	NT_025319	AL360174	106532117	3
S/G/Y/R/B/O	NT_025319	AL512882	106606935	3
S/G/Y/R/B/O	NT_025319	AL049176	106673130	3	RH63476	X	285.63			X	267.40	1		AL049176
S/G/Y/R/B/O	NT_025319	AL049176	106675209	3	RH38689	X	283.62					1		AL049176
S/G/Y/R/B/O	NT_025319	AL591489	106768289	3
S/G/Y/R/B/O	NT_025319	AL590809	106841429	3
S/G/Y/R/B/O	NT_025319	AL356578	106944758	3
S/G/Y/R/B/O	NT_025319	AL357774	106987635	3	AFM317WB9					X	268.20	1		AL357774
S/G/Y/R/B/O	NT_025319	AL357774	107120564	3	WI-10755					X	267.40	1		AL357774
S/G/Y/R/B/O	NT_025319	AL357774	107128290	3	RH14997			X	3821.00			1		AL357774
S/G/Y/R/B/O	NT_025319	AL117326	107156172	3	RH66644	X	287.52					1		AL117326
S/G/Y/R/B/O	NT_025319	AL031117	107228339	3	RH11924	X	287.52					1		AL031117
S/G/Y/R/B/O	NT_025319	AL031117	107246315	3	RH63462	X	283.41			X	267.40	1		AL031117
S/G/Y/R/B/O	NT_025319	AL031117	107294969	3	RH63395	X	287.52			X	268.20	1		AL031117
S/G/Y/R/B/O	NT_025319	AL031117	107294969	3	RH33261			X	3838.00			1		AL031117
S/G/Y/R/B/O	NT_025319	AL031117	107295035	3	RH47363	X	280.91					1		AL031117
S/G/Y/R/B/O	NT_025319	AL031117	107295652	3	RH15935	X	283.62					1		AL031117
S/G/Y/R/B/O	NT_025319	AL031117	107299990	3	AFM340ZA9					X	268.20	1		AL031117
S/G/Y/R/B/O	NT_025319	AL450490	107370157	3
S/G/Y/R/B/O	NT_025319	AL035067	107523425	3	RH92247	X	283.41					1		AL035067, AL590417
S/G/Y/R/B/O	NT_025319	AL589880	107553707	3

NT_025319 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_025319	AL096764	107689631	3	RH93842	X	287.52					1		AL096764
S/G/Y/R/B/O	NT_025319	AL049563	107750380	3	RH63313	X	285.33			X	267.10	1		AL049563
S/G/Y/R/B/O	NT_025319	AL049563	107761589	3	RH14270			X	3368.00			1		AL049563
S/G/Y/R/B/O	NT_025319	AL049563	107776021	3	RH47107	X	292.97					1		AL049563
S/G/Y/R/B/O	NT_025319	AC005191	107904780	3	RH103574	X	285.33					1		AC005191
S/G/Y/R/B/O	NT_025319	AL031388	108083930	3	RH15209	X	285.33					1		AL031388
S/G/Y/R/B/O	NT_025319	AL031388	108083930	3	RH1009			X	3368.00			1		AL031388
S/G/Y/R/B/O	NT_025319		-		RH16167	X	283.62					0	AL049176,	AL049176
S/G/Y/R/B/O	NT_025319		-		WI-5191					X	263.40	1	AL049591,	AL049591
S/G/Y/R/B/O	NT_025319		-		WI-10694					X	263.40	1	AL109751,	AL109751
S/G/Y/R/B/O	NT_025319		-		WI-15922					X	264.80	1	AL133348,	AL022169, AL133348, Z70233
S/G/Y/R/B/O	NT_025319		-		NIB1759					X	264.90	1	AL121878,	AL121878
S/G/Y/R/B/O	NT_025319		-		WI-7238					X	265.00	1	AL049610,	AL049610
S/G/Y/R/B/O	NT_025319		-		WI-21742					X	265.00	1	AC027160, AL139228,	AC027160, AL139228
S/G/Y/R/B/O	NT_025319		-		AFMA275ZC9					X	266.50	1	AC004827,	AC004827
S/G/Y/R/B/O	NT_025319		-		CHLC.GATA46G10					X	266.50	1	AL078580,	AL078580
S/G/Y/R/B/O	NT_025319		-		WI-13613					X	266.50	1	AC004827,	AC004827
S/G/Y/R/B/O	NT_025319		-		SGC33214					X	267.40	1	AL390039,	AL390039
S/G/Y/R/B/O	NT_025319		-		WI-18796					X	267.40	1	AL031177,	AL031177
S/G/Y/R/B/O	NT_025319		-		SGC32037					X	267.40	1		AL606665
S/G/Y/R/B/O	NT_025319		-		WI-18699					X	267.40	1	AC004060, AL590423,	AC004060, AL590423
S/G/Y/R/B/O	NT_025319		-		CHLC.GATA45E03					X	269.00	1	AL031622,	AL031622
S/G/Y/R/B/O	NT_025319		-		WI-10022					X	269.00	1	AL034369,	AL034369
S/G/Y/R/B/O	NT_025319		-		WI-18722					X	269.00	1	AL031177,	AL031177
S/G/Y/R/B/O	NT_025319		-		WI-7137					X	269.80	1	AL035425,	AL035425
S/G/Y/R/B/O	NT_025319		-		WI-14337					X	269.80	1	AL034399,	AL034399, AL606665
S/G/Y/R/B/O	NT_025319		-		CHLC.GATA10C11					X	269.80	1	AL136080,	AL136080, AL353723
S/G/Y/R/B/O	NT_025319		-		SGC38161					X	269.80	1	AL591849,	AL591849
S/G/Y/R/B/O	NT_025319		-		WI-7912					X	269.80	1	AL031177,	AL031177