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  Chromosome X - RH Maps - Single Contig
 

Chromosome X - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_028427 NT_028413 NT_033330 NT_025302 NT_011735 NT_029505 NT_030875 NT_011649
NT_025291 NT_030874 NT_030885 NT_011812 NT_011832 NT_030887 NT_011775 NT_011772
NT_033338 NT_025352 NT_011724 NT_011586 NT_011754 NT_027220 NT_011694 NT_011662
NT_011530 NT_025960 NT_030890 NT_011535 NT_011536 NT_030191 NT_011753 NT_011766
NT_025940 NT_030873 NT_025323 NT_025318 NT_030889 NT_011752 NT_011757 NT_011657
NT_011793 NT_011692 NT_025348 NT_011568 NT_033332 NT_033319 NT_011611 NT_011638
NT_033329 NT_027215 NT_025961 NT_011836 NT_011799 NT_011618 NT_028400 NT_025297
NT_011630 NT_029503 NT_011669 NT_029502 NT_019696 NT_033336 NT_033321 NT_011594
NT_025273 NT_033334 NT_031924 NT_011544 NT_011597 NT_011689 NT_025320 NT_025329
NT_025376 NT_025312 NT_025306 NT_011687 NT_025949 NT_033327 NT_025330 NT_027217
NT_033328 NT_011651 NT_027218 NT_011765 NT_025280 NT_025319 NT_025299 NT_011819
NT_011783 NT_033326 NT_011565 NT_025265 NT_028405 NT_028406 NT_011588 NT_011667
NT_011613 NT_011786 NT_025267 NT_011834 NT_011719 NT_028403 NT_029504 NT_011574
NT_026503 NT_011681 NT_011851 NT_011537 NT_019686 NT_026504 NT_025309 NT_011602
NT_033323 NT_033335 NT_033325 NT_033322 NT_011598 NT_011726 NT_029507 NT_033333
NT_011637 NT_025345 NT_033324 NT_025965 NT_025307


  NT_025965
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_025965U826951494832833RH35781X350.52    1AF274858, AF002998, AF274858, U82695
S/G/Y/R/B/O NT_025965U826951495440583RH76234X356.19    1AF274858, AF274858, U82695
S/G/Y/R/B/O NT_025965U826951495443093RH91197X350.52    1AF274858, AF274858, U82695
S/G/Y/R/B/O NT_025965AF2748581496033803RH63498X350.52    1 AF274858
S/G/Y/R/B/O NT_025965AF2748581496033803WI-15046    X314.801 AF274858
S/G/Y/R/B/O NT_025965AF2748581496159123RH80841X356.42    1 AF274858
S/G/Y/R/B/O NT_025965AF2748581496168033RH25982X350.52    1 AF274858
S/G/Y/R/B/O NT_025965AF2748581496182263RH44301X350.52    1 AF274858
S/G/Y/R/B/O NT_025965AF2748581496235143RH78287X350.52    3AC019099, AL356259, AC019099, AC084868, AF274858, AL356259, AL450318, AL590046
S/G/Y/R/B/O NT_025965AF2748581496352083RH48051X350.52    1 AF274858
S/G/Y/R/B/O NT_025965U521111496859083RH70965X350.52    1 U52111
S/G/Y/R/B/O NT_025965U521111496866153RH66913X350.52    1 U52111
S/G/Y/R/B/O NT_025965U521111497156613RH36940X350.52    1 U52111
S/G/Y/R/B/O NT_025965U521111497319073RH18202X350.52    1 U36341, U41163, U52111, Z66539
S/G/Y/R/B/O NT_025965U521111497507583RH71460X352.26    1 U36341, U52111
S/G/Y/R/B/O NT_025965U521111497508303RH70615X350.52    1 U36341, U52111
S/G/Y/R/B/O NT_025965U521111498147733RH25708X350.52    1 U52111
S/G/Y/R/B/O NT_025965U521111498211013RH92840X350.52    1 U52111
S/G/Y/R/B/O NT_025965U521111498213373RH92620X350.52    1 U52111, Z68129
S/G/Y/R/B/O NT_025965U521111498213963RH12600X350.52    1 U52111, Z68129
S/G/Y/R/B/O NT_025965U521111498804973RH71463X350.95    1 U52111
S/G/Y/R/B/O NT_025965U521121498982033RH38737X350.95    1 U52112, Z29373
S/G/Y/R/B/O NT_025965U521121499422113RH70970X350.95    1 L22206, U52112
S/G/Y/R/B/O NT_025965U521121499431863RH25354X350.95    1 U52112, Z68128
S/G/Y/R/B/O NT_025965U521121499770313RH17361X350.95    1 U52112
S/G/Y/R/B/O NT_025965U521121499831003RH70255X350.95    2 U52112, X79198
S/G/Y/R/B/O NT_025965U521121499833963RH38724X352.81    1 U52112, X79198
S/G/Y/R/B/O NT_025965U521121499843193RH45209X348.80    1 U52112
S/G/Y/R/B/O NT_025965U521121500183873RH74874X352.59    1 U52112
S/G/Y/R/B/O NT_025965U521121500184953RH44298X350.95    1 U52112
S/G/Y/R/B/O NT_025965U521121500460703RH80551X356.76    1AF030876, AF030876, AF031075, U52112
S/G/Y/R/B/O NT_025965U521121500471633RH80797X352.59    1AF030876, AF030876, AF031075, U52112
S/G/Y/R/B/O NT_025965AF0308761500597073RH45050X350.95    1 AF030876, AF031075, AF031078
S/G/Y/R/B/O NT_025965AF0308761500603813RH80656X352.92    1 AF030876, AF031075, AF031078
S/G/Y/R/B/O NT_025965AF0308761500651203RH91676X350.95    1 AF030876, AF031075, AF031078
S/G/Y/R/B/O NT_025965Z470461501568293          
S/G/Y/R/B/O NT_025965Z470661501663713WI-5530    X323.701 Z47066
S/G/Y/R/B/O NT_025965Z681931501915363RH38787X350.95    4AC092402, AC092402, AC092402, Z46936, AC092402, AC092402, AC092402, Z46936, Z68193
S/G/Y/R/B/O NT_025965Z469361501957503          
S/G/Y/R/B/O NT_025965Z492581502178693          
S/G/Y/R/B/O NT_025965L441401502713093RH47410X350.95    1 L44140
S/G/Y/R/B/O NT_025965L441401503055313RH63440X350.95  X323.201 L44140, X86810
S/G/Y/R/B/O NT_025965L441401503247203RH63650X350.95  X323.101 L44140, M81806, S64169
S/G/Y/R/B/O NT_025965L441401503455413RH63598X350.95  X323.101 L44140, X92764
S/G/Y/R/B/O NT_025965L441401503455903RH77751X350.95    1 L44140, X92764
S/G/Y/R/B/O NT_025965L441401503600723RH63481X353.15  X324.601 AL592072, L44140
S/G/Y/R/B/O NT_025965L441401503602663RH68908X350.95    1 AL592072, L44140
S/G/Y/R/B/O NT_025965L441401503604803RH36866X350.95    1 AL592072, L44140
S/G/Y/R/B/O NT_025965L441401503674953RH77733X350.95    1 AL592072, L44140
S/G/Y/R/B/O NT_025965L441401503746633RH63354X353.15  X324.701 AL592072, D83389, L44140


  NT_025965 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_025965L441401503973893RH63532X350.95  X323.201 AL592072, L44140
S/G/Y/R/B/O NT_025965L441401504019513RH26568X352.15    1 AL592072, L44140
S/G/Y/R/B/O NT_025965L441401504079313RH63663X353.15  X326.401 AL592072, AL672302, J03589, L44140
S/G/Y/R/B/O NT_025965L441401504304593RH78316X350.95    1 AL592072, AL672302, L44140, X55448
S/G/Y/R/B/O NT_025965AF2773151504886363RH25998X352.15    2 AF277315, AJ271718, AL592072, AL596249
S/G/Y/R/B/O NT_025965AF2773151504938683RH44897X352.15    2 AF277315, AF277315, AL592072, AL596249, AL672302
S/G/Y/R/B/O NT_025965AF2773151505579063RH44897X352.15    2 AF277315, AF277315, AL592072, AL596249, AL672302
S/G/Y/R/B/O NT_025965AF2773151505631463RH25998X352.15    2 AF277315, AJ271718, AL592072, AL596249
S/G/Y/R/B/O NT_025965AC1074501505990153RH80611X352.37    1 AC107450, AL596249
S/G/Y/R/B/O NT_025965AC1074501505990873RH99020X352.15    1 AC107450, AL596249
S/G/Y/R/B/O NT_025965AC1074501506198213RH80376X354.15    1AC109993, AC107450, AC109993, AL596249
S/G/Y/R/B/O NT_025965AC1074501506575663RH69764X354.94    1AC109993, AC087225, AC107450, AC109993, AL596249
S/G/Y/R/B/O NT_025965AC1099931507011393RH25547X354.15    1 AC087225, AJ010396, AJ224481
S/G/Y/R/B/O NT_025965AC1099931507011903RH63505X354.15  X326.501 AC087225, AC109993, AJ010396, AJ224481
S/G/Y/R/B/O NT_025965AC1099931507024823RH35780X354.15    1 AC087225, AC109993
S/G/Y/R/B/O NT_025965AC1099931507025353RH7862  X4235.00  1 AC087225, AC109993
S/G/Y/R/B/O NT_025965AC1099931507027523RH38735X354.15    1 AC087225, AC109993
S/G/Y/R/B/O NT_025965AC1099931507597103RH38728X354.15    1AL645722, AC109993, AL645722, M88648
S/G/Y/R/B/O NT_025965AL6457221507882811          
S/G/Y/R/B/O NT_025965AL6457351509813991RH35783X356.07    1AC016977, AC016977, AL390881, AL645735
S/G/Y/R/B/O NT_025965AL6457351509838731RH8902  X3257.00  1AC016977, AC016977, AL390881, AL645735, Z24459
S/G/Y/R/B/O NT_025965AL6457351510385511RH63461X356.07    1AC016977, AC016977, AL645735
S/G/Y/R/B/O NT_025965AL6457351510385511WI-13882    X329.601AC016977, AC016977, AL645735
S/G/Y/R/B/O NT_025965AC0169771509460641          
S/G/Y/R/B/O NT_025965 - RH102310X350.95    0U52112, U52112, Z29373
S/G/Y/R/B/O NT_025965 - RH27056X352.15    0  
S/G/Y/R/B/O NT_025965 - RH38686X356.07    0AC016977, AC016977, AL390881
S/G/Y/R/B/O NT_025965 - RH38691X356.07    0  
S/G/Y/R/B/O NT_025965 - RH38694X350.95    0U52112, U52112, X79198
S/G/Y/R/B/O NT_025965 - RH38717X350.95    0 J03589
S/G/Y/R/B/O NT_025965 - RH45008X354.60    2AF003626, AC023224, AF003626
S/G/Y/R/B/O NT_025965 - RH63616X355.28    1AL590325, AL590325
S/G/Y/R/B/O NT_025965 - RH80983X354.37    0