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  Chromosome X - RH Maps - Single Contig
 

Chromosome X - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_028427 NT_028413 NT_033330 NT_025302 NT_011735 NT_029505 NT_030875 NT_011649
NT_025291 NT_030874 NT_030885 NT_011812 NT_011832 NT_030887 NT_011775 NT_011772
NT_033338 NT_025352 NT_011724 NT_011586 NT_011754 NT_027220 NT_011694 NT_011662
NT_011530 NT_025960 NT_030890 NT_011535 NT_011536 NT_030191 NT_011753 NT_011766
NT_025940 NT_030873 NT_025323 NT_025318 NT_030889 NT_011752 NT_011757 NT_011657
NT_011793 NT_011692 NT_025348 NT_011568 NT_033332 NT_033319 NT_011611 NT_011638
NT_033329 NT_027215 NT_025961 NT_011836 NT_011799 NT_011618 NT_028400 NT_025297
NT_011630 NT_029503 NT_011669 NT_029502 NT_019696 NT_033336 NT_033321 NT_011594
NT_025273 NT_033334 NT_031924 NT_011544 NT_011597 NT_011689 NT_025320 NT_025329
NT_025376 NT_025312 NT_025306 NT_011687 NT_025949 NT_033327 NT_025330 NT_027217
NT_033328 NT_011651 NT_027218 NT_011765 NT_025280 NT_025319 NT_025299 NT_011819
NT_011783 NT_033326 NT_011565 NT_025265 NT_028405 NT_028406 NT_011588 NT_011667
NT_011613 NT_011786 NT_025267 NT_011834 NT_011719 NT_028403 NT_029504 NT_011574
NT_026503 NT_011681 NT_011851 NT_011537 NT_019686 NT_026504 NT_025309 NT_011602
NT_033323 NT_033335 NT_033325 NT_033322 NT_011598 NT_011726 NT_029507 NT_033333
NT_011637 NT_025345 NT_033324 NT_025965 NT_025307


  NT_011786
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011786AC0211871230363631          
S/G/Y/R/B/O NT_011786Z725221230429823          
S/G/Y/R/B/O NT_011786Z700411230826403          
S/G/Y/R/B/O NT_011786Z746961230986123          
S/G/Y/R/B/O NT_011786AL5918041232441133          
S/G/Y/R/B/O NT_011786Z702721233544793          
S/G/Y/R/B/O NT_011786Z822531234344633          
S/G/Y/R/B/O NT_011786AL4426471235054743RH807252587.90    5AC017071, AC023331, AC073325, AC083803, Z84720, AC017071, AC023331, AC073325, AC083803, AL442647, Z84720
S/G/Y/R/B/O NT_011786AL5900811235274143          
S/G/Y/R/B/O NT_011786AC0024221235644743          
S/G/Y/R/B/O NT_011786Z829001237036633          
S/G/Y/R/B/O NT_011786AL0319031237935533AFMC031XF5    X288.801 AL031903
S/G/Y/R/B/O NT_011786AL5904201238168243          
S/G/Y/R/B/O NT_011786Z720011238585063          
S/G/Y/R/B/O NT_011786AL0495611239435363          
S/G/Y/R/B/O NT_011786AL3598451240474273          
S/G/Y/R/B/O NT_011786AL5915081241676993          
S/G/Y/R/B/O NT_011786Z933411242637333RH68607X313.72    1 Z93341
S/G/Y/R/B/O NT_011786AL0086331242767723          
S/G/Y/R/B/O NT_011786AL1364491243978033          
S/G/Y/R/B/O NT_011786AL0225771244224593          
S/G/Y/R/B/O NT_011786AL1387451246349823RH13791  X3981.00  1 AL138745
S/G/Y/R/B/O NT_011786AL6628771246373903          
S/G/Y/R/B/O NT_011786AL0221621246774193RH8736  X3981.00  1 AL022162, Z73496
S/G/Y/R/B/O NT_011786AL0221621246775133RH35754X306.65    1 AL022162, Z73496
S/G/Y/R/B/O NT_011786AL0221621246792633RH91601X306.65    1 AL022162, Z73496
S/G/Y/R/B/O NT_011786AL0221621246794193RH25843X306.65    1 AL022162, Z73496
S/G/Y/R/B/O NT_011786AL0221621247327083RH91453X306.65    1 AF195953, AL022162
S/G/Y/R/B/O NT_011786AL0221621247330343RH18197X308.04    1 AF195953, AL022162
S/G/Y/R/B/O NT_011786AL0236531248819563RH63546X304.92  X282.401 AF195953, AL023653
S/G/Y/R/B/O NT_011786AL0236531248819723RH68000X306.65    1 AF195953, AL023653
S/G/Y/R/B/O NT_011786AL0236531248819733RH47211X304.92    1  
S/G/Y/R/B/O NT_011786AL3595421248905023RH63287X304.92  X282.401 AL359542
S/G/Y/R/B/O NT_011786AL3595421248921213RH38772X306.65    1  
S/G/Y/R/B/O NT_011786AL0344051250167373RH25668X304.92    1 AL034405
S/G/Y/R/B/O NT_011786AL0344051250284673RH7675X304.92X3981.00X282.401 AL034405
S/G/Y/R/B/O NT_011786Z822081250879413AFM338ZA9    X282.401 Z82208
S/G/Y/R/B/O NT_011786AL1364501251445473RH103287X305.02    1 AL136450
S/G/Y/R/B/O NT_011786AL1364501251445533RH93023X304.92    1 AL136450
S/G/Y/R/B/O NT_011786AL1364501251465873RH45163X304.92    1 AL136450
S/G/Y/R/B/O NT_011786AL1364501251521443RH35757X306.72    1 AL136450
S/G/Y/R/B/O NT_011786AL1364501251522233RH71459X306.65    1 AL136450
S/G/Y/R/B/O NT_011786Z813631251839343RH38781X304.82    1 Z81363, Z81364
S/G/Y/R/B/O NT_011786AL1392341252185273RH35794X304.92    1 AC021706, AL139234, Z81364
S/G/Y/R/B/O NT_011786AL1392341252474343RH38685X304.92    1 AL139234, Z81370
S/G/Y/R/B/O NT_011786AL0237991252989763          
S/G/Y/R/B/O NT_011786AL0354231254601143RH63458X304.92  X282.401 AL035423
S/G/Y/R/B/O NT_011786AL0354231255001763RH103383X304.92    2AC025096, AL109799, AC025096, AL035423, AL109799
S/G/Y/R/B/O NT_011786AL0354231255002293RH75255X304.92    1 AL035423
S/G/Y/R/B/O NT_011786Z821951255574383WI-6463    X282.401 Z82195


  NT_011786 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011786Z821951255836323RH5149510530.31  10633.802AL355598, AC026587, AC044815, AL133550, AL355598, Z82195
S/G/Y/R/B/O NT_011786AL5919081256920463AFM329XF9    X285.201 AL591908
S/G/Y/R/B/O NT_011786AL5919081257110493RH63525X306.82X3981.00X284.001 AL591908
S/G/Y/R/B/O NT_011786AL5919081257111373RH16270X306.65    1 AL591908
S/G/Y/R/B/O NT_011786AL5919081257111463RH67633X304.82    1 AL591908
S/G/Y/R/B/O NT_011786AL5919081257129083AFM350XF1    X284.001 AL591908
S/G/Y/R/B/O NT_011786AL0497331257291403          
S/G/Y/R/B/O NT_011786Z802321258118183WI-1181    X284.001 Z80232
S/G/Y/R/B/O NT_011786Z802321258243333AFM289VF9    X284.001 Z80232
S/G/Y/R/B/O NT_011786Z802321258610073WI-4479    X284.001 Z80232
S/G/Y/R/B/O NT_011786AL0495651258991113          
S/G/Y/R/B/O NT_011786AL0221531259845493          
S/G/Y/R/B/O NT_011786AL5901311261391153AFM283WD5    X286.801 AL590131
S/G/Y/R/B/O NT_011786AL5901311261767573RH63429X312.27  X286.701 AL590131
S/G/Y/R/B/O NT_011786AL5901311261768053RH35789X310.04    1 AL590131
S/G/Y/R/B/O NT_011786Z777231262758923RH7719X310.04  X286.801 Z77723
S/G/Y/R/B/O NT_011786AL6037581262830943          
S/G/Y/R/B/O NT_011786AL5908061263606763RH63550X310.04  X286.801 AL590806
S/G/Y/R/B/O NT_011786AL5908061263673143RH63330X313.29X4001.00X285.101 AL590806
S/G/Y/R/B/O NT_011786AL5908061263674663RH16410X313.29    1 AL590806
S/G/Y/R/B/O NT_011786AL5908061263807213RH30025  X4039.00  1 AL590806
S/G/Y/R/B/O NT_011786AL1357841264202623          
S/G/Y/R/B/O NT_011786AL0497341265109593          
S/G/Y/R/B/O NT_011786AL3553661266376253          
S/G/Y/R/B/O NT_011786AL5132421266633293          
S/G/Y/R/B/O NT_011786AL1098531267352213RH1379  18478.00  2AL590666, AL109853, AL365256, AL590666
S/G/Y/R/B/O NT_011786AL5132431267852523          
S/G/Y/R/B/O NT_011786AL1215721268441283          
S/G/Y/R/B/O NT_011786AL0086291268852633          
S/G/Y/R/B/O NT_011786AL1097491271614993RH16585X315.59    1 AL109749
S/G/Y/R/B/O NT_011786AL1097491271616223RH37806  X4018.00  1 AL109749
S/G/Y/R/B/O NT_011786AL1097491271625993RH63694X313.82  X290.201 AL109749
S/G/Y/R/B/O NT_011786AL1097491271628133RH63367X313.72  X288.801 AL109749
S/G/Y/R/B/O NT_011786AL4493831271857643          
S/G/Y/R/B/O NT_011786AL0497921272946263RH94237X315.91    1 AL049792
S/G/Y/R/B/O NT_011786Z780221272959853          
S/G/Y/R/B/O NT_011786AL3536761273969613          
S/G/Y/R/B/O NT_011786AL0503101274565183RH8855  X4039.00  1 AL050310
S/G/Y/R/B/O NT_011786AL0503101274592573RH102788X315.59    1 AL050310
S/G/Y/R/B/O NT_011786AL0503101274640373RH36548X315.91    1 AL050310
S/G/Y/R/B/O NT_011786AL0503101274667133RH63364X313.72  X288.801 AL050310
S/G/Y/R/B/O NT_011786AL0503101274730603RH36394X315.91    1 AL050310
S/G/Y/R/B/O NT_011786AL0503101274752063RH69876X315.59    1 AL050310
S/G/Y/R/B/O NT_011786AL0503101275185953RH25486X313.82    1 AL050310
S/G/Y/R/B/O NT_011786AL0503101275239643RH38714X315.59    1 AL050310
S/G/Y/R/B/O NT_011786AL0503101275255843RH103745X315.59    1 AL050310
S/G/Y/R/B/O NT_011786AL1614421275297573          
S/G/Y/R/B/O NT_011786AL0495901276421093          
S/G/Y/R/B/O NT_011786Z860641277132753RH98637X314.67    1 AC046179, Z86064
S/G/Y/R/B/O NT_011786Z860641278507423RH47723X314.67    1 Z86064


  NT_011786 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011786AL0221591278668523          
S/G/Y/R/B/O NT_011786Z822051279376553AFMA203ZH5    X289.001 Z82205
S/G/Y/R/B/O NT_011786Z822051279611833WI-5727    X290.201 Z82205
S/G/Y/R/B/O NT_011786AL0223091280347213          
S/G/Y/R/B/O NT_011786Z813651281057893CHLC.GATA13F06    X290.201 Z81365
S/G/Y/R/B/O NT_011786Z813651281094133DXS6744    X290.201 Z81365
S/G/Y/R/B/O NT_011786Z813651281688343WI-3201    X290.201 AC027090, AL390249, Z81365
S/G/Y/R/B/O NT_011786AL0323621281967973          
S/G/Y/R/B/O NT_011786Z772491282205643WI-4390    X290.201 AC027090, AL390249, Z77249
S/G/Y/R/B/O NT_011786AL0344001283883283RH38695X315.91    1 AL034400
S/G/Y/R/B/O NT_011786AL0344001283896903RH102925X314.95    1 AL034400
S/G/Y/R/B/O NT_011786AL0344001284344783RH63414X314.63  X290.201 AL034400
S/G/Y/R/B/O NT_011786AL1096231284905193          
S/G/Y/R/B/O NT_011786AC0024201286229673RH91678X314.67    1 AC002420
S/G/Y/R/B/O NT_011786AL6628511286698553RH8871  X4018.00  1 AL662851
S/G/Y/R/B/O NT_011786AL0087121287394603RH38712X315.91    1 AL008712
S/G/Y/R/B/O NT_011786AL0091741288543793RH36204X317.19    1 AL009174
S/G/Y/R/B/O NT_011786AL0344011288775513          
S/G/Y/R/B/O NT_011786Z971961289374143RH63517X316.55  X291.501 AC025859, Z97196
S/G/Y/R/B/O NT_011786Z971961289375273RH18522X317.19    1 AC025859, Z97196
S/G/Y/R/B/O NT_011786Z971961289492813RH63493X316.55  X291.501 AC025859, Z97196
S/G/Y/R/B/O NT_011786Z971961289492813RH17563X317.19    1 AC025859, Z97196
S/G/Y/R/B/O NT_011786Z971961289493533RH67696X318.10    1 AC025859, Z97196
S/G/Y/R/B/O NT_011786Z971961289806573RH63614X316.87  X291.501 AC025859, Z97196
S/G/Y/R/B/O NT_011786Z971961289806573RH68769X317.19    1 AC025859, Z97196
S/G/Y/R/B/O NT_011786Z971961289847283RH63473X316.87X4018.00X291.501 AC025859, Z97196
S/G/Y/R/B/O NT_011786Z971961289849403RH16248X316.55    1 AC025859, Z97196
S/G/Y/R/B/O NT_011786Z971961289878513RH45404X318.10    1 AC025859, Z97196
S/G/Y/R/B/O NT_011786Z995701290190783RH70004X317.08    1 AC025859, Z99570
S/G/Y/R/B/O NT_011786Z995701290479083RH42872  X4018.00  1 AC025859, Z99570
S/G/Y/R/B/O NT_011786AF0035291291405633          
S/G/Y/R/B/O NT_011786AC0024071292548073RH6492511375.02    2AP002007, AB026906, AC002407, AC009648, AC067833, AP000788, AP002007, AP002502
S/G/Y/R/B/O NT_011786AL6272091292968183          
S/G/Y/R/B/O NT_011786AC0044091292988143          
S/G/Y/R/B/O NT_011786AL6272101293389253          
S/G/Y/R/B/O NT_011786AL5916681293882133          
S/G/Y/R/B/O NT_011786AC0043831295162443RH98995X317.61    2 AC002408, AC004383, AL590875
S/G/Y/R/B/O NT_011786AC0043831295883703RH38789X317.61    1AC004387, AC004383, AC004387, AL590875, M26434
S/G/Y/R/B/O NT_011786AC0043831295883983RH75567X332.53    1AC004387, AC004383, AC004387, AL590875, M26434
S/G/Y/R/B/O NT_011786AC0043831296141773RH63374X318.67X4166.00  1AC004387, AC004383, AC004387, AL590875
S/G/Y/R/B/O NT_011786AC0043831296141773SGC32894    X302.101AC004387, AC004383, AC004387, AL590875
S/G/Y/R/B/O NT_011786AC0043831296142533RH47525X318.67    1AC004387, AC004383, AC004387, AL590875
S/G/Y/R/B/O NT_011786AC0043831296312533RH92564X318.67    1 AC004383, AL590875
S/G/Y/R/B/O NT_011786AC0043831296324743RH99019X317.61    1AC004387, AC004383, AC004387, AL590875, AL672032
S/G/Y/R/B/O NT_011786AC0043831296331863RH16155X320.11    1AC004387, AC004383, AC004387, AL590875
S/G/Y/R/B/O NT_011786AC0043831296340423RH18517X318.67    1AC004387, AC004383, AC004387, AL590875, AL672032
S/G/Y/R/B/O NT_011786AC0043831296537423RH8119  X4166.00  1AC004387, AC004383, AC004387, AL590875, AL672032
S/G/Y/R/B/O NT_011786AC0043831296538063RH25619X317.61    1AC004387, AC004383, AC004387, AL590875, AL672032
S/G/Y/R/B/O NT_011786AC0043831296575333RH31541  X4166.00  1 AC004383
S/G/Y/R/B/O NT_011786AC0043871296598072          


  NT_011786 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011786AC0046761298668902RH46423X317.61    1 AC004676, AL672032, AL691477
S/G/Y/R/B/O NT_011786AC0046761299192452RH38215  X4176.00  1 AC004676, AL691477, AL691477
S/G/Y/R/B/O NT_011786AC0046761299399522RH92636X318.67    1 AC004676, AL691477, AL691477
S/G/Y/R/B/O NT_011786Z838261299828593RH47898X317.61    1 AL691477, Z83826
S/G/Y/R/B/O NT_011786Z838261299829743RH93773X333.68    1 AL691477, Z83826
S/G/Y/R/B/O NT_011786Z838261299915043RH63471X317.19    1 AL691477, Z83826
S/G/Y/R/B/O NT_011786Z838261299915043WI-12657    X304.401 AL691477, Z83826
S/G/Y/R/B/O NT_011786Z838261299927993RH45483X317.61    1 Z83826
S/G/Y/R/B/O NT_011786Z838261300448693RH31542  X4185.00  1 Z83826
S/G/Y/R/B/O NT_011786Z838261300871683RH103580X317.61    1 Z83826
S/G/Y/R/B/O NT_011786AL1361691301211033RH48181X317.93    1 AL136169
S/G/Y/R/B/O NT_011786AL1361691301284903RH63638X317.93    1 AL136169
S/G/Y/R/B/O NT_011786AL1361691301284903TIGR-A002L20    X302.901 AL136169
S/G/Y/R/B/O NT_011786AL1361691301285073RH63472X317.61    1 AL136169
S/G/Y/R/B/O NT_011786AL1361691301285073WI-9467    X304.401 AL136169
S/G/Y/R/B/O NT_011786AL1361691301323573RH70090X318.67    1 AL136169
S/G/Y/R/B/O NT_011786AL1361691301461653RH38784X317.61    1 AL136169
S/G/Y/R/B/O NT_011786AL1361691301462033RH76771X356.42    1 AL136169
S/G/Y/R/B/O NT_011786AL1361691301462703RH93898X318.67    1  
S/G/Y/R/B/O NT_011786AL5903251301864033RH63616X355.28  X305.801 AL590325
S/G/Y/R/B/O NT_011786AL5903251301889053RH26177X317.40    1 AL590325
S/G/Y/R/B/O NT_011786AL5903251302183423RH38752X317.93    2AL590282, AL591381, AL590282, AL590325, AL591381
S/G/Y/R/B/O NT_011786AL5903251302184143RH103465X317.61    3AL590282, AL591381, AL590282, AL590325, AL591381
S/G/Y/R/B/O NT_011786AL5913811302544173WI-11212    X302.102AL590282, AL590282, AL591381
S/G/Y/R/B/O NT_011786AL5913811303440163RH103465X317.61    3AL590282, AL590325, AL590282, AL590325, AL591381
S/G/Y/R/B/O NT_011786AL5913811303441293RH38752X317.93    2AL590282, AL590325, AL590282, AL590325, AL591381
S/G/Y/R/B/O NT_011786 - RH12514X315.59    0  
S/G/Y/R/B/O NT_011786 - RH1836  X4099.00  1AL590139, AF159278, AL590139, AP002399
S/G/Y/R/B/O NT_011786 - WI-20478    X293.301AL109653, AL109653, Y10607
S/G/Y/R/B/O NT_011786 - RH12533X304.92    0  
S/G/Y/R/B/O NT_011786 - RH30024  X4099.00  1AL023575, AL023575, Z82207
S/G/Y/R/B/O NT_011786 - RH38697X307.38    0AL034405, AL034405
S/G/Y/R/B/O NT_011786 - RH31537  X4111.00  1Z83848, Z83848
S/G/Y/R/B/O NT_011786 - RH38709X313.29    0  
S/G/Y/R/B/O NT_011786 - RH31538  X4087.00  1AL023878, AL023878, AL589793
S/G/Y/R/B/O NT_011786 - RH38744X318.67    0  
S/G/Y/R/B/O NT_011786 - RH32616  X4106.00  1AL391803, AL391803
S/G/Y/R/B/O NT_011786 - RH38785X317.19    0  
S/G/Y/R/B/O NT_011786 - RH33242  X4107.00  1 AL606485
S/G/Y/R/B/O NT_011786 - RH38788X306.65    0  
S/G/Y/R/B/O NT_011786 - RH65695X313.82    0  
S/G/Y/R/B/O NT_011786 - RH67110X318.25    0  
S/G/Y/R/B/O NT_011786 - RH91315X318.67    0