Chromosome X - RH Maps - Single Contig

Chromosome X - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_028427	NT_028413	NT_033330	NT_025302	NT_011735	NT_029505	NT_030875	NT_011649
NT_025291	NT_030874	NT_030885	NT_011812	NT_011832	NT_030887	NT_011775	NT_011772
NT_033338	NT_025352	NT_011724	NT_011586	NT_011754	NT_027220	NT_011694	NT_011662
NT_011530	NT_025960	NT_030890	NT_011535	NT_011536	NT_030191	NT_011753	NT_011766
NT_025940	NT_030873	NT_025323	NT_025318	NT_030889	NT_011752	NT_011757	NT_011657
NT_011793	NT_011692	NT_025348	NT_011568	NT_033332	NT_033319	NT_011611	NT_011638
NT_033329	NT_027215	NT_025961	NT_011836	NT_011799	NT_011618	NT_028400	NT_025297
NT_011630	NT_029503	NT_011669	NT_029502	NT_019696	NT_033336	NT_033321	NT_011594
NT_025273	NT_033334	NT_031924	NT_011544	NT_011597	NT_011689	NT_025320	NT_025329
NT_025376	NT_025312	NT_025306	NT_011687	NT_025949	NT_033327	NT_025330	NT_027217
NT_033328	NT_011651	NT_027218	NT_011765	NT_025280	NT_025319	NT_025299	NT_011819
NT_011783	NT_033326	NT_011565	NT_025265	NT_028405	NT_028406	NT_011588	NT_011667
NT_011613	NT_011786	NT_025267	NT_011834	NT_011719	NT_028403	NT_029504	NT_011574
NT_026503	NT_011681	NT_011851	NT_011537	NT_019686	NT_026504	NT_025309	NT_011602
NT_033323	NT_033335	NT_033325	NT_033322	NT_011598	NT_011726	NT_029507	NT_033333
NT_011637	NT_025345	NT_033324	NT_025965	NT_025307

NT_011618

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_011618	Z98051	50173005	3
S/G/Y/R/B/O	NT_011618	AL589872	50219646	3	RH33820			X	1569.00			1		AL589872
S/G/Y/R/B/O	NT_011618	Z84469	50329304	3	RH99195	X	174.65					1		Z84469
S/G/Y/R/B/O	NT_011618	Z84469	50332894	3	RH63501	X	171.58			X	96.80	1		Z84469
S/G/Y/R/B/O	NT_011618	Z84469	50395703	3	RH8927			X	1574.00			1		Z84469
S/G/Y/R/B/O	NT_011618	Z84469	50395716	3	RH36924	X	172.04					1		Z84469
S/G/Y/R/B/O	NT_011618	AL049793	50439015	3
S/G/Y/R/B/O	NT_011618	AL591766	50496074	3	WI-10851					X	97.70	1		AL591766
S/G/Y/R/B/O	NT_011618	Z85987	50581937	3	RH63688	X	174.07			X	98.20	1		Z85987
S/G/Y/R/B/O	NT_011618	Z85987	50582013	3	RH74519			X	1571.00			1		Z85987
S/G/Y/R/B/O	NT_011618	Z85987	50584219	3	RH98842	X	174.31					1		Z85987
S/G/Y/R/B/O	NT_011618	AL391139	50693213	3	RH63635	X	174.07			X	99.30	1		AL391139
S/G/Y/R/B/O	NT_011618	AL391139	50697026	3	RH66055	5	297.56					2	AC022445, AC104113, AC109470,	AC016435, AC022445, AC104113, AC109470
S/G/Y/R/B/O	NT_011618	AL391139	50698326	3	RH80726	X	171.00					1		AL391139
S/G/Y/R/B/O	NT_011618	AL391139	50703440	3	RH32308			X	1557.00	X	98.90	1		AL391139
S/G/Y/R/B/O	NT_011618	AL391139	50706983	3	WI-16401					X	96.50	1		AL391139
S/G/Y/R/B/O	NT_011618	AL391139	50713474	3	RH63531	X	174.07	X	1563.00	X	99.30	1		AL391139
S/G/Y/R/B/O	NT_011618	AL109854	50772815	3
S/G/Y/R/B/O	NT_011618	AL022575	50848561	3	AFMB355XF9					X	107.30	1		AL022575
S/G/Y/R/B/O	NT_011618	Z98046	50951466	3	RH68550	X	176.12					1		Z98046
S/G/Y/R/B/O	NT_011618	Z98046	50951900	3	RH77912	X	171.70					1		Z98046
S/G/Y/R/B/O	NT_011618	AL049732	51067497	3	RH63299	X	176.66	X	1566.00	X	98.00	1		AL049732
S/G/Y/R/B/O	NT_011618	AL049732	51069636	3	RH1865			X	1566.00			1		AL049732
S/G/Y/R/B/O	NT_011618	AL020991	51134737	3	RH35805	X	177.39					2	Z83821,	AL020991, Z83821
S/G/Y/R/B/O	NT_011618	AL020991	51145383	3	RH94266	X	171.47					2	Z83821,	AF068624, AL020991, Z83821
S/G/Y/R/B/O	NT_011618	AL020991	51145558	3	WI-12678					X	102.90	2	Z83821,	AF068624, AL020991, Z83821
S/G/Y/R/B/O	NT_011618	AL020991	51145558	3	RH63419	X	178.47					2	Z83821,	AF068624, AL020991, Z83821
S/G/Y/R/B/O	NT_011618	AL020991	51150897	3	RH63536	X	177.85			X	100.70	2	Z83821,	AF068624, AL020991, Z83821
S/G/Y/R/B/O	NT_011618	AL020991	51150897	3	RH67577	X	177.85					2	Z83821,	AF068624, AL020991, Z83821
S/G/Y/R/B/O	NT_011618	AL020991	51157475	3	RH63497	X	171.88			X	97.50	2	Z83821,	AF068624, AL020991, Z83821
S/G/Y/R/B/O	NT_011618	AL020991	51157598	3	RH16577	X	177.39					2	Z83821,	AF068624, AL020991, Z83821
S/G/Y/R/B/O	NT_011618	AL020991	51177994	3	RH74923	X	174.42					2	Z83821,	AL020991, Z83821
S/G/Y/R/B/O	NT_011618		-		RH103974	X	175.97					1	AL353698,	AL353698
S/G/Y/R/B/O	NT_011618		-		RH1141			X	1506.00			2	AL022166, AL590410,	AL022166, AL590410, AL627224, AL627224, AL627224
S/G/Y/R/B/O	NT_011618		-		WI-18679					X	96.10	1	AC002415,	AC002415
S/G/Y/R/B/O	NT_011618		-		RH26996	X	175.97					1	AL031115,	AL031115, Z99130
S/G/Y/R/B/O	NT_011618		-		RH29856			X	1455.00			1	AL139397,	AL139397
S/G/Y/R/B/O	NT_011618		-		IB3700					X	96.70	1	AC002415,	AC002415
S/G/Y/R/B/O	NT_011618		-		RH35795	X	171.81					1	AL159987,	AL159987
S/G/Y/R/B/O	NT_011618		-		RH34309			X	1506.00			2	AL022166, AL590410,	AL022166, AL590410, AL627224, AL627224, AL627224
S/G/Y/R/B/O	NT_011618		-		WI-4651					X	97.00	1	AL022166,	AL022166, AL627224, AL627224
S/G/Y/R/B/O	NT_011618		-		RH38745	X	172.23					0
S/G/Y/R/B/O	NT_011618		-		RH47076	X	177.85					1	AL139277,	AL139277
S/G/Y/R/B/O	NT_011618		-		RH63387	X	171.88					1	AL034396,	AL034396
S/G/Y/R/B/O	NT_011618		-		RH63449	X	171.00			X	97.30	1	AL590410,	AL590410, AL627224, AL627224
S/G/Y/R/B/O	NT_011618		-		RH65356	X	172.75					0
S/G/Y/R/B/O	NT_011618		-		RH75816	X	171.58					1	AL590410,	AL590410, AL627224, AL627224