Chromosome X - RH Maps - Single Contig

Chromosome X - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_028427	NT_028413	NT_033330	NT_025302	NT_011735	NT_029505	NT_030875	NT_011649
NT_025291	NT_030874	NT_030885	NT_011812	NT_011832	NT_030887	NT_011775	NT_011772
NT_033338	NT_025352	NT_011724	NT_011586	NT_011754	NT_027220	NT_011694	NT_011662
NT_011530	NT_025960	NT_030890	NT_011535	NT_011536	NT_030191	NT_011753	NT_011766
NT_025940	NT_030873	NT_025323	NT_025318	NT_030889	NT_011752	NT_011757	NT_011657
NT_011793	NT_011692	NT_025348	NT_011568	NT_033332	NT_033319	NT_011611	NT_011638
NT_033329	NT_027215	NT_025961	NT_011836	NT_011799	NT_011618	NT_028400	NT_025297
NT_011630	NT_029503	NT_011669	NT_029502	NT_019696	NT_033336	NT_033321	NT_011594
NT_025273	NT_033334	NT_031924	NT_011544	NT_011597	NT_011689	NT_025320	NT_025329
NT_025376	NT_025312	NT_025306	NT_011687	NT_025949	NT_033327	NT_025330	NT_027217
NT_033328	NT_011651	NT_027218	NT_011765	NT_025280	NT_025319	NT_025299	NT_011819
NT_011783	NT_033326	NT_011565	NT_025265	NT_028405	NT_028406	NT_011588	NT_011667
NT_011613	NT_011786	NT_025267	NT_011834	NT_011719	NT_028403	NT_029504	NT_011574
NT_026503	NT_011681	NT_011851	NT_011537	NT_019686	NT_026504	NT_025309	NT_011602
NT_033323	NT_033335	NT_033325	NT_033322	NT_011598	NT_011726	NT_029507	NT_033333
NT_011637	NT_025345	NT_033324	NT_025965	NT_025307

NT_011651

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_011651	Z73497	99962009	3	RH93628	X	277.43					2	AL034485,	AL034485, Z73497
S/G/Y/R/B/O	NT_011651	Z74620	99964648	3
S/G/Y/R/B/O	NT_011651	Z82254	100011014	3	RH63358	X	276.22					1		Z82254
S/G/Y/R/B/O	NT_011651	Z82254	100011014	3	SGC33118					X	236.40	1		Z82254
S/G/Y/R/B/O	NT_011651	Z82254	100011057	3	RH79967	X	275.40					1		Z82254
S/G/Y/R/B/O	NT_011651	Z82254	100011158	3	RH38780	X	277.43					1		Z82254
S/G/Y/R/B/O	NT_011651	AL135959	100013803	3	RH63540	X	275.02			X	271.60	1		AL135959
S/G/Y/R/B/O	NT_011651	AL135959	100013803	3	RH69847	X	277.43					1		AL135959
S/G/Y/R/B/O	NT_011651	AL135959	100021713	3	RH104213	X	275.02					1		AL135959
S/G/Y/R/B/O	NT_011651	AL049631	100086975	3	RH101929	X	275.02					1		AL049631
S/G/Y/R/B/O	NT_011651	AL121868	100199132	3
S/G/Y/R/B/O	NT_011651	AL136977	100317301	3
S/G/Y/R/B/O	NT_011651	AL133385	100383578	3
S/G/Y/R/B/O	NT_011651	AL133381	100429326	3
S/G/Y/R/B/O	NT_011651	AL050401	100472803	3
S/G/Y/R/B/O	NT_011651	AL121866	100584906	3
S/G/Y/R/B/O	NT_011651	AL021812	100622351	3
S/G/Y/R/B/O	NT_011651	AL008642	100667450	3
S/G/Y/R/B/O	NT_011651	Z70224	100667801	3
S/G/Y/R/B/O	NT_011651	Z80774	100726457	3	RH63705	X	280.15					1		AL008714, Z80774
S/G/Y/R/B/O	NT_011651	Z80774	100726457	3	WI-15651					X	271.20	1		AL008714, Z80774
S/G/Y/R/B/O	NT_011651	AL442225	100735531	3
S/G/Y/R/B/O	NT_011651	Z69724	100738773	3
S/G/Y/R/B/O	NT_011651	Z95333	100778223	3
S/G/Y/R/B/O	NT_011651	AL512445	100803282	3
S/G/Y/R/B/O	NT_011651	Z68872	100840925	3
S/G/Y/R/B/O	NT_011651	Z70232	100877401	3
S/G/Y/R/B/O	NT_011651	Z75745	100911462	3
S/G/Y/R/B/O	NT_011651	AL133276	100949107	3
S/G/Y/R/B/O	NT_011651	Z71182	101018292	3	WI-4011					X	271.10	1		Z71182
S/G/Y/R/B/O	NT_011651	Z70040	101026351	3
S/G/Y/R/B/O	NT_011651	Z75957	101061831	3
S/G/Y/R/B/O	NT_011651	Z74477	101110582	3	RH103718	X	294.21					1		Z74477
S/G/Y/R/B/O	NT_011651	Z81144	101113510	3
S/G/Y/R/B/O	NT_011651	Z69721	101135797	3
S/G/Y/R/B/O	NT_011651	Z75747	101168577	3
S/G/Y/R/B/O	NT_011651	AL391070	101207532	3
S/G/Y/R/B/O	NT_011651	Z70225	101218947	3
S/G/Y/R/B/O	NT_011651	AL391071	101257308	3
S/G/Y/R/B/O	NT_011651	Z74619	101339487	3
S/G/Y/R/B/O	NT_011651	AL022168	101376779	3
S/G/Y/R/B/O	NT_011651	Z70051	101392221	3
S/G/Y/R/B/O	NT_011651	AL133272	101436797	3
S/G/Y/R/B/O	NT_011651	Z69367	101467339	3
S/G/Y/R/B/O	NT_011651	Z99706	101507506	3
S/G/Y/R/B/O	NT_011651	Z73967	101556077	3	RH31533			X	3181.00			1		AC022962
S/G/Y/R/B/O	NT_011651	Z68330	101575025	3
S/G/Y/R/B/O	NT_011651	Z68908	101612079	3
S/G/Y/R/B/O	NT_011651	Z68328	101645645	3
S/G/Y/R/B/O	NT_011651	AL139813	101689988	3

NT_011651 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_011651	Z70274	101700234	3
S/G/Y/R/B/O	NT_011651	Z97356	101743407	3
S/G/Y/R/B/O	NT_011651	Z69734	101765153	3
S/G/Y/R/B/O	NT_011651	Z68339	101800284	3
S/G/Y/R/B/O	NT_011651	Z83850	101847478	3	RH70201	X	281.12					1		AC026977, Z83850
S/G/Y/R/B/O	NT_011651	Z83850	101847566	3	RH63347	X	294.21	X	3181.00	X	271.10	1		AC026977, Z83850
S/G/Y/R/B/O	NT_011651	Z83850	101848037	3	RH33741			X	3165.00			1		AC026977, Z83850
S/G/Y/R/B/O	NT_011651	Z83850	101924288	3	RH38727	X	280.60					1		L13470, X64171, Z83850
S/G/Y/R/B/O	NT_011651	Z83850	101924313	3	RH26385	X	280.60					1		L13470, X64171, Z83850
S/G/Y/R/B/O	NT_011651	AL512661	101933267	3
S/G/Y/R/B/O	NT_011651	Z69722	101972539	3
S/G/Y/R/B/O	NT_011651	AL135922	102013153	3
S/G/Y/R/B/O	NT_011651	Z68289	102099486	3	RH75141	X	281.28					1		Z68289
S/G/Y/R/B/O	NT_011651	AL133271	102112538	3
S/G/Y/R/B/O	NT_011651	AL139812	102218089	3	RH26591	10	254.60					2	AC010864, AL590872, AL591116, Z97985,	AC010864, AL139812, AL590872, AL591116, Z97985
S/G/Y/R/B/O	NT_011651	AL590306	102384732	3	WI-10004					X	271.70	1		AL590306
S/G/Y/R/B/O	NT_011651	AL606515	102399695	3
S/G/Y/R/B/O	NT_011651	AL590808	102436712	3
S/G/Y/R/B/O	NT_011651	AL606833	102536896	3
S/G/Y/R/B/O	NT_011651	AL391315	102686762	3	RH103289	X	280.81					1		AL391315, AL591467
S/G/Y/R/B/O	NT_011651	AL391315	102686868	3	RH32623			X	3724.00			1		AL391315, AL591467
S/G/Y/R/B/O	NT_011651	AL391315	102690341	3	DXS6750					X	271.10	1		AL391315, AL591467
S/G/Y/R/B/O	NT_011651	AL591849	102765579	3	RH38705	X	281.54					1		AL591849
S/G/Y/R/B/O	NT_011651	AL591849	102790098	3	RH63558	X	293.07			X	269.80	1		AL591849
S/G/Y/R/B/O	NT_011651	AL158821	102829216	3	RH25806	X	293.07					1		AL158821
S/G/Y/R/B/O	NT_011651	AL158821	102830814	3	RH80420	X	282.16					1		AL158821
S/G/Y/R/B/O	NT_011651	AL158821	102830970	3	RH93988	X	283.31					1		AL158821
S/G/Y/R/B/O	NT_011651	AL390039	102951932	3	RH63522	X	282.69					1		AL390039
S/G/Y/R/B/O	NT_011651	AL390039	102951932	3	RH32687			X	3708.00	X	267.40	1		AL390039
S/G/Y/R/B/O	NT_011651	AL390039	102952050	3	RH18436	X	283.00					1		AL390039
S/G/Y/R/B/O	NT_011651	AL390039	102954466	3	RH17499	X	283.00					1		AC023366, AL390039
S/G/Y/R/B/O	NT_011651	AL390039	103012267	3	RH45630	X	293.07					1		AC023366, AL390039
S/G/Y/R/B/O	NT_011651	AL390039	103021794	3	RH44300	X	293.07					1		AC023366, AL390039
S/G/Y/R/B/O	NT_011651	AL136112	103085181	3
S/G/Y/R/B/O	NT_011651	AC004081	103165345	3	RH78899	X	287.52					1		J03069
S/G/Y/R/B/O	NT_011651	AL035088	103294237	3
S/G/Y/R/B/O	NT_011651	AL137787	103493191	3	RH38803	X	283.24					1		AL137787
S/G/Y/R/B/O	NT_011651		-		RH36177	X	283.24					0