Chromosome X - RH Maps - Single Contig

Chromosome X - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_028427	NT_028413	NT_033330	NT_025302	NT_011735	NT_029505	NT_030875	NT_011649
NT_025291	NT_030874	NT_030885	NT_011812	NT_011832	NT_030887	NT_011775	NT_011772
NT_033338	NT_025352	NT_011724	NT_011586	NT_011754	NT_027220	NT_011694	NT_011662
NT_011530	NT_025960	NT_030890	NT_011535	NT_011536	NT_030191	NT_011753	NT_011766
NT_025940	NT_030873	NT_025323	NT_025318	NT_030889	NT_011752	NT_011757	NT_011657
NT_011793	NT_011692	NT_025348	NT_011568	NT_033332	NT_033319	NT_011611	NT_011638
NT_033329	NT_027215	NT_025961	NT_011836	NT_011799	NT_011618	NT_028400	NT_025297
NT_011630	NT_029503	NT_011669	NT_029502	NT_019696	NT_033336	NT_033321	NT_011594
NT_025273	NT_033334	NT_031924	NT_011544	NT_011597	NT_011689	NT_025320	NT_025329
NT_025376	NT_025312	NT_025306	NT_011687	NT_025949	NT_033327	NT_025330	NT_027217
NT_033328	NT_011651	NT_027218	NT_011765	NT_025280	NT_025319	NT_025299	NT_011819
NT_011783	NT_033326	NT_011565	NT_025265	NT_028405	NT_028406	NT_011588	NT_011667
NT_011613	NT_011786	NT_025267	NT_011834	NT_011719	NT_028403	NT_029504	NT_011574
NT_026503	NT_011681	NT_011851	NT_011537	NT_019686	NT_026504	NT_025309	NT_011602
NT_033323	NT_033335	NT_033325	NT_033322	NT_011598	NT_011726	NT_029507	NT_033333
NT_011637	NT_025345	NT_033324	NT_025965	NT_025307

NT_011799

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_011799	AL591212	49480252	3
S/G/Y/R/B/O	NT_011799	AL139396	49517057	3	RH63402	X	166.73			X	86.90	1		AL139396
S/G/Y/R/B/O	NT_011799	AL139396	49531711	3	RH1427			17	4220.00			2	AL663123,	AC002413, AL139396, AL663123
S/G/Y/R/B/O	NT_011799	AL139396	49547051	3	RH76565	10	97.94					2	AL360083,	AC002413, AL139396, AL360083
S/G/Y/R/B/O	NT_011799	AL139396	49548954	3	RH48597	10	97.91					2	AL360083,	AC002413, AL139396, AL360083
S/G/Y/R/B/O	NT_011799	AL139396	49567384	3	RH38765	X	161.21					1		AL139396
S/G/Y/R/B/O	NT_011799	AL139396	49567392	3	RH46347	X	162.41					1		AL139396
S/G/Y/R/B/O	NT_011799	AL139396	49581624	3	RH93069	X	161.21					1		AL139396
S/G/Y/R/B/O	NT_011799	AL139396	49582234	3	RH81091	X	166.68					1		AL139396
S/G/Y/R/B/O	NT_011799	AL139396	49582758	3	RH80792	X	166.03					1		AL139396
S/G/Y/R/B/O	NT_011799	AL139396	49596171	3	RH67638	X	164.12					1		AL139396
S/G/Y/R/B/O	NT_011799	AL139396	49622972	3	RH35765	11	67.04					1		AL139396
S/G/Y/R/B/O	NT_011799	AL139396	49651346	3	DXS1000					X	69.60	1		AL139396
S/G/Y/R/B/O	NT_011799	AL590123	49681935	3
S/G/Y/R/B/O	NT_011799	AL161779	49763335	3	WI-13565					X	95.40	1		AC004390, AL161779
S/G/Y/R/B/O	NT_011799	AL161779	49765857	3	RH25393	X	163.30					1		AC004390, AL161779
S/G/Y/R/B/O	NT_011799	AL161779	49766134	3	RH38782	X	163.30					1		AC004390, AL161779
S/G/Y/R/B/O	NT_011799	Z97054	49818510	3	RH103498	X	166.61					1		Z97054
S/G/Y/R/B/O	NT_011799	Z97054	49819080	3	RH63572	X	163.30			X	95.40	1		AF037438, Z97054
S/G/Y/R/B/O	NT_011799	Z97054	49819080	3	RH14992			X	1584.00			1		AF037438, Z97054
S/G/Y/R/B/O	NT_011799	Z97054	49819127	3	RH35750	X	165.37					1		AF037438, Z97054
S/G/Y/R/B/O	NT_011799	Z97054	49919940	3	RH63648	X	166.80			X	86.90	1	AC031980,	AC031980, AL109851, Z97054
S/G/Y/R/B/O	NT_011799	Z97054	49919955	3	RH35760	X	163.30					1	AC031980,	AC031980, AL109851, Z97054
S/G/Y/R/B/O	NT_011799	Z97054	49920591	3	RH63630	X	164.31			X	87.80	1	AC031980,	AC031980, AL109851, Z97054
S/G/Y/R/B/O	NT_011799	Z97054	49920591	3	RH63499	X	164.31			X	95.40	1	AC031980,	AC031980, AL109851, Z97054
S/G/Y/R/B/O	NT_011799	Z97054	49920770	3	RH66308	X	164.35					1	AC031980,	AC031980, AL109851, Z97054
S/G/Y/R/B/O	NT_011799	AL592046	49968255	3	RH46399	X	163.30					1	AC031980,	AC031980, AL109851, AL592046
S/G/Y/R/B/O	NT_011799	AL592046	49996471	3	RH63392	X	166.50			X	95.20	1	AC031980,	AC031980, AL592046
S/G/Y/R/B/O	NT_011799	AL592046	49998640	3	RH79713	X	159.65					1	AC031980,	AC031980, AL109851, AL592046
S/G/Y/R/B/O	NT_011799	Z94044	50083282	3	DXS1199					X	90.50	1		Z94044
S/G/Y/R/B/O	NT_011799	Z94044	50083282	3	RH29876			X	1595.00			1		Z94044
S/G/Y/R/B/O	NT_011799	AC031980	50117573	1
S/G/Y/R/B/O	NT_011799		-		RH38753	X	161.21					0
S/G/Y/R/B/O	NT_011799		-		RH2036			X	1425.00			1	AL034396,	AL034396
S/G/Y/R/B/O	NT_011799		-		SGC31978					X	92.20	0
S/G/Y/R/B/O	NT_011799		-		RH38804	X	164.66					2	AL445236, AL450023,	AL445236, AL450023
S/G/Y/R/B/O	NT_011799		-		RH63335	X	166.73					1	AC002415,	AC002415
S/G/Y/R/B/O	NT_011799		-		RH63342	X	165.56			X	95.40	2	AL445236,	AL445227, AL445236
S/G/Y/R/B/O	NT_011799		-		RH63450	X	166.56					1	AC002415,	AC002415
S/G/Y/R/B/O	NT_011799		-		RH66279	X	166.27					4	AF196972, AL450023, AL606490,	AF196972, AL445227, AL450023, AL606490
S/G/Y/R/B/O	NT_011799		-		RH68756	X	164.19					1	AL096774,	AL096774
S/G/Y/R/B/O	NT_011799		-		RH99258	X	166.03					0