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  Chromosome X - RH Maps - Single Contig
 

Chromosome X - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_028427 NT_028413 NT_033330 NT_025302 NT_011735 NT_029505 NT_030875 NT_011649
NT_025291 NT_030874 NT_030885 NT_011812 NT_011832 NT_030887 NT_011775 NT_011772
NT_033338 NT_025352 NT_011724 NT_011586 NT_011754 NT_027220 NT_011694 NT_011662
NT_011530 NT_025960 NT_030890 NT_011535 NT_011536 NT_030191 NT_011753 NT_011766
NT_025940 NT_030873 NT_025323 NT_025318 NT_030889 NT_011752 NT_011757 NT_011657
NT_011793 NT_011692 NT_025348 NT_011568 NT_033332 NT_033319 NT_011611 NT_011638
NT_033329 NT_027215 NT_025961 NT_011836 NT_011799 NT_011618 NT_028400 NT_025297
NT_011630 NT_029503 NT_011669 NT_029502 NT_019696 NT_033336 NT_033321 NT_011594
NT_025273 NT_033334 NT_031924 NT_011544 NT_011597 NT_011689 NT_025320 NT_025329
NT_025376 NT_025312 NT_025306 NT_011687 NT_025949 NT_033327 NT_025330 NT_027217
NT_033328 NT_011651 NT_027218 NT_011765 NT_025280 NT_025319 NT_025299 NT_011819
NT_011783 NT_033326 NT_011565 NT_025265 NT_028405 NT_028406 NT_011588 NT_011667
NT_011613 NT_011786 NT_025267 NT_011834 NT_011719 NT_028403 NT_029504 NT_011574
NT_026503 NT_011681 NT_011851 NT_011537 NT_019686 NT_026504 NT_025309 NT_011602
NT_033323 NT_033335 NT_033325 NT_033322 NT_011598 NT_011726 NT_029507 NT_033333
NT_011637 NT_025345 NT_033324 NT_025965 NT_025307


  NT_011588
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011588AC0693921142425911          
S/G/Y/R/B/O NT_011588AC0074861143131683          
S/G/Y/R/B/O NT_011588AL4504881144877933          
S/G/Y/R/B/O NT_011588AC0023771145123583          
S/G/Y/R/B/O NT_011588AC0061441146877463RH6500510420.03    2AL136982, AL670379, AC006144, AL136982, AL670379, U08997, X66310
S/G/Y/R/B/O NT_011588AL6271421147331153          
S/G/Y/R/B/O NT_011588AL6703791147386881          
S/G/Y/R/B/O NT_011588AC0081621147546133          
S/G/Y/R/B/O NT_011588AC0118901149054243WI-4623    X276.001 AC011890
S/G/Y/R/B/O NT_011588AC0118901149309683DXS1001    X276.001 AC011890
S/G/Y/R/B/O NT_011588AC0118901149309813RH37067X298.19    1 AC011890
S/G/Y/R/B/O NT_011588AC0118901150216403RH63368X298.19  X276.001 AC011890
S/G/Y/R/B/O NT_011588AL4510051150340613          
S/G/Y/R/B/O NT_011588AC0024761150717083RH103925X298.19    1 AC002476
S/G/Y/R/B/O NT_011588AC0024761151780513RH75468X298.19    1 AC002476
S/G/Y/R/B/O NT_011588AC0024761151921013RH79207X298.19    1 AC002476
S/G/Y/R/B/O NT_011588AC0024761151956143RH35793X298.19    1 AC002476
S/G/Y/R/B/O NT_011588AC0024761151971833RH63399X298.19  X276.001 AC002476
S/G/Y/R/B/O NT_011588AC0024761151972793RH10545X298.19    1 AC002476
S/G/Y/R/B/O NT_011588AC0024761151972893RH38696X298.19    1 AC002476
S/G/Y/R/B/O NT_011588AC0024761152017773RH91281X298.19    1 AC002476
S/G/Y/R/B/O NT_011588AC0024761152018353RH38763X298.19    1 AC002476
S/G/Y/R/B/O NT_011588AC0024761152029153RH67006X298.19    1 AC002476
S/G/Y/R/B/O NT_011588AC0024761152062923RH36081X298.29    1 AC002476
S/G/Y/R/B/O NT_011588AC0069621152074473RH63689X298.19  X276.001AC002476, AC002476, AC006962
S/G/Y/R/B/O NT_011588AC0069621152075843RH17076X298.29    1AC002476, AC002476, AC006962
S/G/Y/R/B/O NT_011588AL5122861152724963          
S/G/Y/R/B/O NT_011588AC0020861153751343RH14989  X3571.00  1 AC002086
S/G/Y/R/B/O NT_011588AC0020861153751993RH78409X298.19    1 AC002086
S/G/Y/R/B/O NT_011588AC0020861154564523WI-10712    X276.002AC005023, AC002086, AC005023
S/G/Y/R/B/O NT_011588AC0061471154767573          
S/G/Y/R/B/O NT_011588AC0050231155748523WI-10712    X276.002AC002086, AC002086, AC005023
S/G/Y/R/B/O NT_011588AC0024771157085613RH69561X298.19    1 AC002477, AL589985
S/G/Y/R/B/O NT_011588AC0024771157086033RH77706X298.29    1 AC002477, AL589985
S/G/Y/R/B/O NT_011588AC0024771157102673RH18473X298.19    1 AC002477, AL589985
S/G/Y/R/B/O NT_011588AC0024771157120813NIB4    X276.101 AC002477, AL589985
S/G/Y/R/B/O NT_011588AC0024771157120813RH63444X296.27    1 AC002477, AL589985
S/G/Y/R/B/O NT_011588AC0024771157121603RH25051X298.29    1 AC002477, AL589985
S/G/Y/R/B/O NT_011588AC0024771157127673RH63351X298.19  X276.001 AC002477, AL589985
S/G/Y/R/B/O NT_011588AC0024771157128483RH18491X298.19    1 AC002477, AL589985
S/G/Y/R/B/O NT_011588AC0024771157128873RH47102X296.09    1 AC002477, AL589985
S/G/Y/R/B/O NT_011588AC0024771157302533RH92064X296.17    1 AL589985
S/G/Y/R/B/O NT_011588AC0024771157572863RH77990X298.19    2 AC002477, AL589985
S/G/Y/R/B/O NT_011588AC0024771157631683RH47820X298.19    1 AC002477, AL589985
S/G/Y/R/B/O NT_011588AC0050521158102103          
S/G/Y/R/B/O NT_011588AL3553481159443203          
S/G/Y/R/B/O NT_011588AC0049131160115873RH18205X298.19    1 AC004913
S/G/Y/R/B/O NT_011588AC0049131160143613RH12106X298.09    1 AC004913
S/G/Y/R/B/O NT_011588AC0049131160163333RH38278  X3571.00  1 AC004913
S/G/Y/R/B/O NT_011588AC0049131160178213RH102135X298.19    1 AC004913


  NT_011588 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011588AC0049131160476493RH38743X298.19    1 AC004913
S/G/Y/R/B/O NT_011588AC0049131160495823RH67193X298.19    1 AC004913
S/G/Y/R/B/O NT_011588AC0049131160495993RH38738X298.29    1 AC004913
S/G/Y/R/B/O NT_011588AC0051901160724393          
S/G/Y/R/B/O NT_011588AC0040001160848863          
S/G/Y/R/B/O NT_011588AC0049731162128033          
S/G/Y/R/B/O NT_011588AC0048351163894443RH12552X296.48    1 AC004835
S/G/Y/R/B/O NT_011588AC0048351163895943RH67007X296.48    1 AC004835
S/G/Y/R/B/O NT_011588AC0048351163973943RH70157X296.27    1 AC004835, AJ249131
S/G/Y/R/B/O NT_011588AL4418871164313433          
S/G/Y/R/B/O NT_011588AL5903761164976233          
S/G/Y/R/B/O NT_011588AC0241341165157471          
S/G/Y/R/B/O NT_011588AC0070741165257823          
S/G/Y/R/B/O NT_011588AC0061431167672763RH46184X298.19    1 AC006143, AL355299
S/G/Y/R/B/O NT_011588AC0061431167673113RH38764X298.19    1 AC006143, AL355299
S/G/Y/R/B/O NT_011588AC0063141167750023          
S/G/Y/R/B/O NT_011588AL5914371168315323          
S/G/Y/R/B/O NT_011588AL3598511168768753AFM347ZB5    X276.001 AL359851
S/G/Y/R/B/O NT_011588AL4419851171474583RH7811017333.20    2 AL391236, AL589868
S/G/Y/R/B/O NT_011588AL3575621171628503          
S/G/Y/R/B/O NT_011588AL5898471172898153          
S/G/Y/R/B/O NT_011588AL5134871173925463          
S/G/Y/R/B/O NT_011588AL5913841175366233          
S/G/Y/R/B/O NT_011588AL5130821175445783          
S/G/Y/R/B/O NT_011588AL5914091176797323          
S/G/Y/R/B/O NT_011588AL6703181178112483          
S/G/Y/R/B/O NT_011588AL3599561178682013          
S/G/Y/R/B/O NT_011588AL1098001179287713          
S/G/Y/R/B/O NT_011588Z838481181402153RH31537  X4111.00  1 Z83848
S/G/Y/R/B/O NT_011588AL0354261182620283          
S/G/Y/R/B/O NT_011588Z828991183635723RH7746X299.80  X277.601 Z82899
S/G/Y/R/B/O NT_011588AL3562131183939143          
S/G/Y/R/B/O NT_011588AL5901391184994003RH1836  X4099.00  1 AF159278, AL590139, AP002399
S/G/Y/R/B/O NT_011588AL5901391185002373RH91805X299.80    1 AF159278, AL590139, AP002399
S/G/Y/R/B/O NT_011588AL5901391185011733RH63305X299.70  X277.601 AF159278
S/G/Y/R/B/O NT_011588AL5901391185013523RH80476X299.80    1 AF159278, AL590139, AP002399
S/G/Y/R/B/O NT_011588AL5901391185306043RH63703X299.70  X277.601 AL590139, AP002399
S/G/Y/R/B/O NT_011588AL0309961186114233RH38762X299.80    1 AL030996
S/G/Y/R/B/O NT_011588Z829011186853953RH63675X299.80  X277.601 Z82901
S/G/Y/R/B/O NT_011588Z829011187066163RH16331X294.84    1 Z82901
S/G/Y/R/B/O NT_011588AL0235751187228513WI-9727    X277.601 AL023575, Z82976
S/G/Y/R/B/O NT_011588AL0235751187910383RH30024  X4099.00  1 AL023575, Z82207
S/G/Y/R/B/O NT_011588AL5915831188033623          
S/G/Y/R/B/O NT_011588AL0221561188720553          
S/G/Y/R/B/O NT_011588AL1216011189226083RH17239X299.90    1 AL121601, Z82207, Z93014
S/G/Y/R/B/O NT_011588AL1216011189593173WI-2863    X278.401 AL121601, Z93014
S/G/Y/R/B/O NT_011588AL1216011189833073RH104106X299.90    1 AL121601
S/G/Y/R/B/O NT_011588AL1216011189866753RH45607X299.80    1 AC026085, AL121601, Z93014
S/G/Y/R/B/O NT_011588AL3554761190574603RH63319X299.80  X277.601 AC026085, AL355476
S/G/Y/R/B/O NT_011588AL5122681191340903          


  NT_011588 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011588AL3912411191603493          
S/G/Y/R/B/O NT_011588AL0227181193834663RH93240X299.80    1 AL022718
S/G/Y/R/B/O NT_011588AL0227181193875063RH75321X299.70    1 AL022718
S/G/Y/R/B/O NT_011588AL0227181193879063RH26194X299.90    1 AL022718
S/G/Y/R/B/O NT_011588AL0238781194535823RH31538  X4087.00  1 AL023878, AL589793
S/G/Y/R/B/O NT_011588Z810081195126653          
S/G/Y/R/B/O NT_011588Z859951196227243RH71468X301.60    1 AL589793, Z85995
S/G/Y/R/B/O NT_011588AL0310751197033373          
S/G/Y/R/B/O NT_011588Z976291198428253RH104212X301.60    1 Z97629
S/G/Y/R/B/O NT_011588AL0237741198919053          
S/G/Y/R/B/O NT_011588Z838231199965443WI-4592    X279.301 Z83823
S/G/Y/R/B/O NT_011588Z983031200159803AFM240XB10    X279.301 Z98303
S/G/Y/R/B/O NT_011588Z930181200290263          
S/G/Y/R/B/O NT_011588Z822421201034823          
S/G/Y/R/B/O NT_011588AL0087071201951083          
S/G/Y/R/B/O NT_011588 - RH10898X298.29    0  
S/G/Y/R/B/O NT_011588 - RH14997  X3821.00  1AL357774, AL357774
S/G/Y/R/B/O NT_011588 - RH25904X299.70    1AL035551, AL035551
S/G/Y/R/B/O NT_011588 - RH1742  X3744.00  1AL031177, AL031177
S/G/Y/R/B/O NT_011588 - RH45451X299.80    0  
S/G/Y/R/B/O NT_011588 - RH29227  X3764.00  1AL109943, AL109943
S/G/Y/R/B/O NT_011588 - RH47562X299.80    0  
S/G/Y/R/B/O NT_011588 - RH32623  X3724.00  1AL391315, AL391315, AL591467
S/G/Y/R/B/O NT_011588 - RH47685X298.19    0  
S/G/Y/R/B/O NT_011588 - RH32687  X3708.00  1AL390039, AL390039
S/G/Y/R/B/O NT_011588 - RH98429X298.19    0  
S/G/Y/R/B/O NT_011588 - RH33261  X3838.00  1AL031117, AL031117
S/G/Y/R/B/O NT_011588 - RH33433  X3788.00  1AL034403, AL034403, AL161914
S/G/Y/R/B/O NT_011588 - RH38108  X3764.00  1AL035425, AL035425