Home    Genome Browser    BLAT Search    Help
  Chromosome X - RH Maps - Single Contig
 

Chromosome X - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_028427 NT_028413 NT_033330 NT_025302 NT_011735 NT_029505 NT_030875 NT_011649
NT_025291 NT_030874 NT_030885 NT_011812 NT_011832 NT_030887 NT_011775 NT_011772
NT_033338 NT_025352 NT_011724 NT_011586 NT_011754 NT_027220 NT_011694 NT_011662
NT_011530 NT_025960 NT_030890 NT_011535 NT_011536 NT_030191 NT_011753 NT_011766
NT_025940 NT_030873 NT_025323 NT_025318 NT_030889 NT_011752 NT_011757 NT_011657
NT_011793 NT_011692 NT_025348 NT_011568 NT_033332 NT_033319 NT_011611 NT_011638
NT_033329 NT_027215 NT_025961 NT_011836 NT_011799 NT_011618 NT_028400 NT_025297
NT_011630 NT_029503 NT_011669 NT_029502 NT_019696 NT_033336 NT_033321 NT_011594
NT_025273 NT_033334 NT_031924 NT_011544 NT_011597 NT_011689 NT_025320 NT_025329
NT_025376 NT_025312 NT_025306 NT_011687 NT_025949 NT_033327 NT_025330 NT_027217
NT_033328 NT_011651 NT_027218 NT_011765 NT_025280 NT_025319 NT_025299 NT_011819
NT_011783 NT_033326 NT_011565 NT_025265 NT_028405 NT_028406 NT_011588 NT_011667
NT_011613 NT_011786 NT_025267 NT_011834 NT_011719 NT_028403 NT_029504 NT_011574
NT_026503 NT_011681 NT_011851 NT_011537 NT_019686 NT_026504 NT_025309 NT_011602
NT_033323 NT_033335 NT_033325 NT_033322 NT_011598 NT_011726 NT_029507 NT_033333
NT_011637 NT_025345 NT_033324 NT_025965 NT_025307


  NT_011611
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011611AL606490457207583RH66279X166.27    4AF196972, AL450023, AF196972, AL445227, AL450023, AL606490
S/G/Y/R/B/O NT_011611AL606490457940583RH38716X143.34    2 AL606490, AL606490
S/G/Y/R/B/O NT_011611AL606490458031103RH38716X143.34    2 AL606490, AL606490
S/G/Y/R/B/O NT_011611AF196972458302313RH66279X166.27    4AL450023, AL606490, AF196972, AL445227, AL450023, AL606490
S/G/Y/R/B/O NT_011611AF196972458584363RH93254X143.34    1 AF196972
S/G/Y/R/B/O NT_011611AF196972458825243RH63644X142.51  X73.401 AF196972
S/G/Y/R/B/O NT_011611AF196972458858273RH63311X142.51  X73.401 AF196972
S/G/Y/R/B/O NT_011611AF196972459202583RH17606X142.73    1 AF196972
S/G/Y/R/B/O NT_011611AF196972459221403RH63490X139.21  X70.401AF196969, AF196969, AF196972
S/G/Y/R/B/O NT_011611AF196972459223033RH46098X139.21    1AF196969, AF196969, AF196972
S/G/Y/R/B/O NT_011611AF196972459236343RH63465X142.73  X71.701AF196969, AF196969, AF196972
S/G/Y/R/B/O NT_011611AF196972459236843RH16246X142.51    1AF196969, AF196969, AF196972
S/G/Y/R/B/O NT_011611AF196972459283213RH36014X142.73    1AF196969, AF196969, AF196972
S/G/Y/R/B/O NT_011611AF196969459607193RH38719X142.73    1 AC027819, AF196969
S/G/Y/R/B/O NT_011611AF196969459608533RH13831  X1059.00  1 AC027819, AF196969
S/G/Y/R/B/O NT_011611AF196969459620423RH63457X139.10  X70.801AC115618, AC027819, AC115618, AF196969
S/G/Y/R/B/O NT_011611AF196969459622253RH74768X140.56    1AC115618, AC027819, AC115618, AF196969
S/G/Y/R/B/O NT_011611AF196969459623363RH47499X142.73    1AC115618, AC027819, AC115618, AF196969
S/G/Y/R/B/O NT_011611AF196969459773553RH63491X139.42X1059.00X72.301AC115618, AC027819, AC115618, AF196969
S/G/Y/R/B/O NT_011611AF196969459776533RH14996  X1019.00  1AC115618, AC027819, AC115618, AF196969
S/G/Y/R/B/O NT_011611AF196969459778923RH35800X142.73    1AC115618, AC027819, AC115618, AF196969
S/G/Y/R/B/O NT_011611AF196969459797063RH75733X139.21    1AC115618, AC027819, AC115618, AF196969
S/G/Y/R/B/O NT_011611AF196969459807303RH38758X143.34    1AC115618, AC027819, AC115618, AF196969
S/G/Y/R/B/O NT_011611AF196969459997363RH17605X143.34    1AC115618, AC027819, AC115618, AF149817, AF196969
S/G/Y/R/B/O NT_011611AF196969460048073RH26458X141.19    1AC115618, AC027819, AC115618, AF149817, AF196969
S/G/Y/R/B/O NT_011611AF196969460085353RH63653X139.21    1AC115618, AC115618, AF149817, AF196969
S/G/Y/R/B/O NT_011611AF196969460085353WI-9558    X54.801AC115618, AC115618, AF149817, AF196969
S/G/Y/R/B/O NT_011611AF196969460085813RH77750X139.32    1AC115618, AC115618, AF196969
S/G/Y/R/B/O NT_011611AC115618460387343RH27935X139.10    2AC094079, AC027819, AC094079, AC115618
S/G/Y/R/B/O NT_011611AC115618460910123RH79911X138.57    1AF196970, AC027819, AC115618, AF115549, AF196970
S/G/Y/R/B/O NT_011611AC115618460910223RH91649X142.73    1AF196970, AC027819, AC115618, AF115549, AF196970
S/G/Y/R/B/O NT_011611AC115618461086743RH63683X141.19  X72.801AF196970, AC027819, AC115618, AF196970
S/G/Y/R/B/O NT_011611AF196970461203033          
S/G/Y/R/B/O NT_011611AC115617461646353          
S/G/Y/R/B/O NT_011611AF196971461876253RH47645X142.73    1 AF196971
S/G/Y/R/B/O NT_011611AF196971461938953RH38797X141.19    1 AF196971
S/G/Y/R/B/O NT_011611AF196971462243983RH63519X139.28  X71.901 AF196971
S/G/Y/R/B/O NT_011611AF196971462245643RH28394X138.89    1 AF196971
S/G/Y/R/B/O NT_011611AF196971462245703RH25159X140.56    1 AF196971
S/G/Y/R/B/O NT_011611AF196971462246863RH9911X142.73    1 AF196971
S/G/Y/R/B/O NT_011611AF196971462309543RH93778X140.56    1  
S/G/Y/R/B/O NT_011611AF196971462923473RH103041X139.32    1AF207550, AF196971, AF207550
S/G/Y/R/B/O NT_011611AF207550463020003RH38767X140.77    1 AB042425, AF207550
S/G/Y/R/B/O NT_011611AF207550463023483RH63524X140.38  X73.301 AB042425
S/G/Y/R/B/O NT_011611AF207550463119303RH38711X147.27    1 AB042425, AF207550
S/G/Y/R/B/O NT_011611AF207550463119923RH78860X138.57    1 AB042425, AF207550
S/G/Y/R/B/O NT_011611AF207550463215013RH18187X144.95    1 AF207550
S/G/Y/R/B/O NT_011611AF207550463528483RH14322  X1183.00  1 AF207550
S/G/Y/R/B/O NT_011611AF207550463597273RH76726X146.66    1 AF207550
S/G/Y/R/B/O NT_011611AF207550463598113RH91735X144.95    1 AF207550


  NT_011611 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011611AF207550463601233RH93281X141.19    1 AF207550
S/G/Y/R/B/O NT_011611AF207550463716463RH104221X147.27    1 AF207550
S/G/Y/R/B/O NT_011611AF207550464078203RH63513X147.27X1190.00X72.501 AF207550
S/G/Y/R/B/O NT_011611AF196779464504143RH103001X147.27    1 AF196779
S/G/Y/R/B/O NT_011611AF196779464841673RH98772X147.27    1 AF196779
S/G/Y/R/B/O NT_011611AF196779464919583RH63477X147.38  X72.401 AF196779
S/G/Y/R/B/O NT_011611AF196779464920243RH18203X145.05    1 AF196779
S/G/Y/R/B/O NT_011611AF196779465426243RH77979X147.27    1 AF196779
S/G/Y/R/B/O NT_011611AF196779465436403RH70282X147.27    1 AF196779
S/G/Y/R/B/O NT_011611AF196779465527203RH38721X147.27    1 AF196779, U93305
S/G/Y/R/B/O NT_011611AF196779465527443RH7837  X995.00  1 AF196779, U93305
S/G/Y/R/B/O NT_011611AF196779465664043RH18083X144.95    1 AF196779, U93305
S/G/Y/R/B/O NT_011611AF235097466139613RH29897  X995.00  1 AF235097, AJ006216
S/G/Y/R/B/O NT_011611AF235097466283503RH99318X147.27    1 AF235097
S/G/Y/R/B/O NT_011611AF235097466534753RH38257  X1198.00  1 AF235097
S/G/Y/R/B/O NT_011611AF235097466654403RH75148X141.58    1 AF235097
S/G/Y/R/B/O NT_011611AF235098467948833RH15089X145.05    1 AF235098
S/G/Y/R/B/O NT_011611AF235098467948833RH29851  X1238.00  1 AF235098
S/G/Y/R/B/O NT_011611AF238380469777753RH75139X157.86    1 AC027240, AF238380
S/G/Y/R/B/O NT_011611AF222686470378953RH63613X148.73    1 AC027240, AF222686
S/G/Y/R/B/O NT_011611AF222686470378953WI-21198    X83.301 AC027240, AF222686
S/G/Y/R/B/O NT_011611AF198097471201953          
S/G/Y/R/B/O NT_011611AJ239323471933183RH38802X147.17    1 AJ239323, AL663118
S/G/Y/R/B/O NT_011611AJ239323471980843RH26270X147.38    1  
S/G/Y/R/B/O NT_011611AJ239323471997433RH26396X141.08    1 AJ239323, AL663118
S/G/Y/R/B/O NT_011611AL513168472626163          
S/G/Y/R/B/O NT_011611AL663119472916043RH92753X147.27    1 AL663119
S/G/Y/R/B/O NT_011611 - RH102836X142.73    0AL356464, AL606490, AL606490, AL606490, AL683817, AL683817, AL356464, AL356797, AL606490, AL606490, AL606490, AL683817, AL683817
S/G/Y/R/B/O NT_011611 - RH32735  X1090.00  1Z83822, Z83822
S/G/Y/R/B/O NT_011611 - WI-5587    X61.401AL359272, AL359272
S/G/Y/R/B/O NT_011611 - RH102933X144.95    0  
S/G/Y/R/B/O NT_011611 - WI-13729    X66.501AC023152, AC027066, AL158055, AC023152, AC027066, AL158055
S/G/Y/R/B/O NT_011611 - RH38778X147.27    0  
S/G/Y/R/B/O NT_011611 - WI-5652    X66.802AL390060, AL662886, AL390060, AL662886
S/G/Y/R/B/O NT_011611 - SGC34244    X68.800  
S/G/Y/R/B/O NT_011611 - DXS1000    X69.601AL139396, AL139396
S/G/Y/R/B/O NT_011611 - RH63292X139.32X1177.00X69.700  
S/G/Y/R/B/O NT_011611 - RH93465X148.73    0  
S/G/Y/R/B/O NT_011611 - RH93495X142.73    0AF196969, AF196972, AF196969, AF196972
S/G/Y/R/B/O NT_011611 - RH38161  X1074.00X71.701Z98304, Z98304
S/G/Y/R/B/O NT_011611 - RH8890  X1151.00  1Z98304, AL356797, Z98304
S/G/Y/R/B/O NT_011611 - WI-14908    X71.901Z83822, Z83822
S/G/Y/R/B/O NT_011611 - RH8926  X1112.00  1AL590223, AL590283, AL590223, AL590283
S/G/Y/R/B/O NT_011611 - RH8929  X1054.00  1AC094079, AC094079